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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 4372next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|15607143|ref|NP_214515.1| chromosomal replication initiation protein (Rv0001) [Mycobacterium tuberculosis H37Rv] 507 VFDB 8-503 -117.000 34  [L] COG0593 ATPase involved in DNA replication initiation
2 gi|15607144|ref|NP_214516.1| DNA polymerase III subunit beta (Rv0002) [Mycobacterium tuberculosis H37Rv] 402 VFDB 13-402 -95.500 24  [L] COG0592 DNA polymerase sliding clamp subunit (PCNA homolog)
3 gi|15607145|ref|NP_214517.1| recombination protein F (Rv0003) [Mycobacterium tuberculosis H37Rv] 385 VFDB 1-377 -101.000 24  [L] COG1195 Recombinational DNA repair ATPase (RecF pathway)
4 gi|15607146|ref|NP_214518.1| hypothetical protein (Rv0004) [Mycobacterium tuberculosis H37Rv] 187 VFDB 1-187 -80.100 70  [R] COG5512 Zn-ribbon-containing, possibly RNA-binding protein and truncated derivatives
5 gi|15607147|ref|NP_214519.1| DNA gyrase subunit B (Rv0005) [Mycobacterium tuberculosis H37Rv] 714 VFDB 10-595 -10.600 11  [O] KOG0020 Endoplasmic reticulum glucose-regulated protein (GRP94/endoplasmin), HSP90 family
44-714 -154.000 49  [L] COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit
6 gi|15607148|ref|NP_214520.1| DNA gyrase subunit A (Rv0006) [Mycobacterium tuberculosis H37Rv] 838 VFDB 10-838 -159.000 40  [L] COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit
7 gi|15607149|ref|NP_214521.1| hypothetical protein (Rv0007) [Mycobacterium tuberculosis H37Rv] 304 VFDB 1-304 -10.200 [K] KOG3915 Transcription regulator dachshund, contains SKI/SNO domain
2-198 -11.000 [R] KOG2350 Zn-finger protein joined to JAZF1 (predicted suppressor)
8 gi|15607150|ref|NP_214522.1| hypothetical protein (Rv0008c) [Mycobacterium tuberculosis H37Rv] 145 VFDB 1-128 -7.330 13  [R] COG5643 Protein containing a metal-binding domain shared with formylmethanofuran dehydrogenase subunit E
9 gi|15607151|ref|NP_214523.1| iron-regulated peptidyl-prolyl cis-trans isomerase A (Rv0009) [Mycobacterium tuberculosis H37Rv] 182 VFDB 2-181 -86.800 45  [O] KOG0881 Cyclophilin type peptidyl-prolyl cis-trans isomerase
10 gi|15607152|ref|NP_214524.1| hypothetical protein (Rv0010c) [Mycobacterium tuberculosis H37Rv] 141 VFDB 39-132 -9.160 11  [S] COG4687 Uncharacterized protein conserved in bacteria
11 gi|15607153|ref|NP_214525.1| putative septation inhibitor protein (Rv0011c) [Mycobacterium tuberculosis H37Rv] 93 VFDB 29-92 -8.430 18  [S] COG5528 Predicted integral membrane protein
12 gi|15607154|ref|NP_214526.1| hypothetical protein (Rv0012) [Mycobacterium tuberculosis H37Rv] 262 VFDB 18-250 -68.400 20  [S] COG3879 Uncharacterized protein conserved in bacteria
13 gi|57116682|ref|YP_177615.1| para-aminobenzoate synthase component II (Rv0013) [Mycobacterium tuberculosis H37Rv] 232 VFDB 2-232 -66.600 21  [F] KOG1622 GMP synthase
3-190 -85.300 50  [EH] COG0512 Anthranilate/para-aminobenzoate synthases component II
14 gi|15607156|ref|NP_214528.1| transmembrane serine/threonine-protein kinase B PKNB (protein kinase B) (STPK B) (Rv0014c) [Mycobacterium tuberculosis H37Rv] 626 VFDB 1-331 -104.000 35  [RTKL] COG0515 Serine/threonine protein kinase
429-626 -52.900 84  [S] COG2815 Uncharacterized protein conserved in bacteria
15 gi|15607157|ref|NP_214529.1| transmembrane serine/threonine-protein kinase A PKNA (protein kinase A) (STPK A) (Rv0015c) [Mycobacterium tuberculosis H37Rv] 431 VFDB 4-343 -102.000 29  [RTKL] COG0515 Serine/threonine protein kinase
10-431 -48.300 19  [T] KOG0576 Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family
16 gi|15607158|ref|NP_214530.1|(removed signalp:1-30) penicillin-binding protein PbpA (Rv0016c) [Mycobacterium tuberculosis H37Rv] 461 VFDB 12-461 -94.700 24  [M] COG0768 Cell division protein FtsI/penicillin-binding protein 2
17 gi|15607159|ref|NP_214531.1|(removed signalp:1-35) cell division protein RodA (Rv0017c) [Mycobacterium tuberculosis H37Rv] 434 VFDB 1-420 -12.000 13  [M] COG3307 Lipid A core - O-antigen ligase and related enzymes
35-415 -89.600 25  [D] COG0772 Bacterial cell division membrane protein
18 gi|15607160|ref|NP_214532.1| serine/threonine phosphatase (Rv0018c) [Mycobacterium tuberculosis H37Rv] 514 VFDB 1-248 -67.200 29  [T] COG0631 Serine/threonine protein phosphatase
8-287 -28.700 16  [T] KOG0698 Serine/threonine protein phosphatase
19 gi|15607161|ref|NP_214533.1| hypothetical protein (Rv0019c) [Mycobacterium tuberculosis H37Rv] 155 VFDB 42-155 -38.300 24  [T] COG1716 FOG: FHA domain
20 gi|15607162|ref|NP_214534.1| hypothetical protein (Rv0020c) [Mycobacterium tuberculosis H37Rv] 527 VFDB 1-526 -9.770 [U] KOG1091 Ypt/Rab-specific GTPase-activating protein GYP6
23-435 -15.600 [R] KOG2350 Zn-finger protein joined to JAZF1 (predicted suppressor)
278-518 -24.100 12  [T] KOG3872 FOG: FHA domain

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Jaroszewski L, Godzik A. Tolerating some redundancy significantly speeds up clustering of large protein databases. Bioinformatics. 2002 Jan;18(1):77-82.