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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 2171next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|15675949|ref|NP_273067.1| putative acetyltransferase (NMB0001) [Neisseria meningitidis MC58] 163 HGM_OVER 90-149 -2.740 20  PB002794 gi|86143885|ref|ZP_01062253.1| hypothetical protein MED217_03525 [Flavobacterium sp. MED217]gi|85829592|gb|EAQ48055.1| hypothetical protein MED217_03525 [Leeuwenhoekiella blandensis MED217]
2 gi|15675950|ref|NP_273068.1|(removed signalp:1-36) hypothetical protein (NMB0002) [Neisseria meningitidis MC58] 95 HGM_OVER 15-61 -3.650 10  PB012472 gi|62259485|gb|AAX77857.1| unknown protein [synthetic construct]
3 gi|15675951|ref|NP_273069.1| glutamyl-tRNA synthetase (NMB0003) [Neisseria meningitidis MC58] 464 HGM_OVER 153-323 -3.050 PB001823 Q5L7Q9_BACFN/1-326 PB001823; Pfam-B_1823;
4 gi|15675952|ref|NP_273070.1|(removed signalp:1-37) EpiH/GdmH-related protein (NMB0004) [Neisseria meningitidis MC58] 177 HGM_OVER 15-89 -3.080 HGC00166 gi|163579340|dbj|BABE01005762.1|1.0 TMP00473;
5 gi|15675953|ref|NP_273071.1| arsenate reductase (NMB0005) [Neisseria meningitidis MC58] 117 HGM_OVER 22-95 -3.740 PB022697 Q5LAY4_BACFN/1-165 PB022697; Pfam-B_22697;
6 gi|15675954|ref|NP_273072.1|(removed signalp:1-22) thioredoxin-related protein (NMB0006) [Neisseria meningitidis MC58] 138 HGM_OVER 35-86 -4.680 PB046158 _JGI.0336690_ 2004028347 [Human Gut Community Subject 8]
7 gi|15675955|ref|NP_273073.1| ABC transporter ATP-binding protein (NMB0007) [Neisseria meningitidis MC58] 216 HGM_OVER 30-189 -2.980 PB005684 gi|160884252|ref|ZP_02065255.1| hypothetical protein BACOVA_02230 [Bacteroides ovatus ATCC 8483]gi|156109991|gb|EDO11736.1| hypothetical protein BACOVA_02230 [Bacteroides ovatus ATCC 8483]
8 gi|15675956|ref|NP_273074.1| putative cell division protein FtsX (NMB0008) [Neisseria meningitidis MC58] 305 HGM_OVER 37-206 -4.210 PB007740 Q89YT2_BACTN/1-193 PB007740; Pfam-B_7740;
9 gi|15675957|ref|NP_273075.1| BolA/YrbA family protein (NMB0009) [Neisseria meningitidis MC58] 82 HGM_OVER 36-80 -2.680 11  PB027498 Q7MTK6_PORGI/1-146 PB027498; Pfam-B_27498;
10 gi|15675958|ref|NP_273076.1| phosphoglycerate kinase (NMB0010) [Neisseria meningitidis MC58] 403 HGM_OVER 44-259 -3.250 13  PB002776 gi|157737147|ref|YP_001489830.1| hypothetical protein Abu_0901 [Arcobacter butzleri RM4018]gi|157699001|gb|ABV67161.1| hypothetical protein Abu_0901 [Arcobacter butzleri RM4018]
11 gi|15675959|ref|NP_273077.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase (NMB0011) [Neisseria meningitidis MC58] 417 HGM_OVER 274-416 -2.860 15  HGC00816 gi|163609134|dbj|BABG01026932.1|1.0 TMP01075;
12 gi|15675960|ref|NP_273078.1| hypothetical protein (NMB0012) [Neisseria meningitidis MC58] 323 HGM_OVER 90-238 -3.990 11  PB038151 Q8A4A5_BACTN/1-178 PB038151; Pfam-B_38151;
13 gi|15675961|ref|NP_273079.1| hypothetical protein (NMB0013) [Neisseria meningitidis MC58] 149 HGM_OVER 43-145 -6.620 PB001708 Q3IRP6_NATPD/1-505 PB001708; Pfam-B_1708;
14 gi|15675962|ref|NP_273080.1| 3-deoxy-D-manno-octulosonic-acid transferase (NMB0014) [Neisseria meningitidis MC58] 423 HGM_OVER 90-422 -3.050 PB022815 A4DEQ0_LISMO/1-452 PB022815; Pfam-B_22815;
15 gi|15675963|ref|NP_273081.1| 6-phosphogluconate dehydrogenase (NMB0015) [Neisseria meningitidis MC58] 482 HGM_OVER 1-163 -3.160 10  PB046158 _JGI.0336690_ 2004028347 [Human Gut Community Subject 8]
16 gi|15675964|ref|NP_273082.1| hypothetical protein (NMB0016) [Neisseria meningitidis MC58] 78 HGM_OVER 45-75 -2.900 29  HGC00311 gi|163635536|dbj|BABG01000737.1|2.0 TMP00178;
17 gi|15675965|ref|NP_273083.1| UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase (NMB0017) [Neisseria meningitidis MC58] 307 HGM_OVER 5-164 -2.430 16  PB000119 Q6KIT1_MYCMO/1-381 PB000119; Pfam-B_119;
18 gi|15675966|ref|NP_273084.1|(removed signalp:1-27) pilin PilE (NMB0018) [Neisseria meningitidis MC58] 143 HGM_OVER 1-29 -6.890 13  PB067216 JCVI_PEP_1096676511767 /source_dna_id=JCVI_ORF_1096676511766 /offset=0 /translation_table=11 /length=256 /full_length=256
19 gi|77358699|ref|YP_338284.1| pilS cassette (NMB0019) [Neisseria meningitidis MC58] 136 HGM_OVER 1-67 -4.700 11  PB128892 A6TNK2_9CLOT/1-174 PB128892; Pfam-B_128892;
20 gi|77358700|ref|YP_338285.1| pilS cassette (NMB0020) [Neisseria meningitidis MC58] 124 HGM_OVER 1-67 -5.120 14  PB128892 A6TNK2_9CLOT/1-174 PB128892; Pfam-B_128892;

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Tkacz A, Godzik A., Rychlewski L. A support vector machine approach to the identification of phosphorylation sites. Cell Mol Biol Lett. 2005;10(1):73-89.