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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 21-40 of 2171< prev pagenext page >

# Query Length Result vs. Range Score %id Covered by template(s)
21 gi|77358701|ref|YP_338286.1| pilS cassette (NMB0021) [Neisseria meningitidis MC58] 124 PfamA32U 1-116 -29.200 12  PF00114.19; Q60163_MORBO/35-157; Pilin (bacterial filament)
22 gi|77358702|ref|YP_338287.1| pilS cassette (NMB0022) [Neisseria meningitidis MC58] 112 PfamA32U 3-100 -22.600 16  PF00114.19; Q60163_MORBO/35-157; Pilin (bacterial filament)
23 gi|77358703|ref|YP_338288.1| pilS cassette (NMB0023) [Neisseria meningitidis MC58] 135 PfamA32U 1-115 -28.300 15  PF00114.19; Q60163_MORBO/35-157; Pilin (bacterial filament)
24 gi|77358704|ref|YP_338289.1| pilS cassette (NMB0024) [Neisseria meningitidis MC58] 198 PfamA32U 3-102 -22.200 16  PF00114.19; Q60163_MORBO/35-157; Pilin (bacterial filament)
25 gi|77358705|ref|YP_338290.1| large pilS cassette (NMB0025) [Neisseria meningitidis MC58] 225 PfamA32U 89-217 -33.800 12  PF00114.19; Q60163_MORBO/35-157; Pilin (bacterial filament)
26 gi|15677981|ref|NP_273092.1| pilS cassette (NMB0026) [Neisseria meningitidis MC58] 115 PfamA32U 3-66 -13.200 25  PF00114.19; Q60163_MORBO/35-157; Pilin (bacterial filament)
27 gi|15675967|ref|NP_273093.1| peptidyl-prolyl cis-trans isomerase (NMB0027) [Neisseria meningitidis MC58] 109 PfamA32U 15-105 -66.900 49  PF00254.28; A0A0N4TXG0_BRUPA/14-105; FKBP-type peptidyl-prolyl cis-trans isomerase
28 gi|15675968|ref|NP_273094.1|(removed signalp:1-17) hypothetical protein (NMB0028) [Neisseria meningitidis MC58] 55 PfamA32U 1-35 -28.800 42  PF09834.9; E1SP40_FERBD/1-52; Predicted membrane protein (DUF2061 topsan)
29 gi|15675969|ref|NP_273095.1| glycerate dehydrogenase (NMB0029) [Neisseria meningitidis MC58] 317 PfamA32U 6-317 -90.100 29  PF00389.30; Q9KCG9_BACHD/20-325; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
30 gi|15675970|ref|NP_273096.1| methionyl-tRNA synthetase (NMB0030) [Neisseria meningitidis MC58] 685 PfamA32U 5-405 -125.000 33  PF09334.11; SYM_CHLTE/8-409; tRNA synthetases class I (M)
421-588 -11.700 15  PF08264.13; A3DDJ3_CLOTH/685-843; Anticodon-binding domain of tRNA
588-682 -15.300 23  PF01588.20; SYFB_SYNE7/45-149; Putative tRNA binding domain
31 gi|15675971|ref|NP_273097.1| D-fructose-6-phosphate amidotransferase (NMB0031) [Neisseria meningitidis MC58] 612 PfamA32U 1-251 -39.300 16  PF13230.6; Q5P4D2_AROAE/1-272; Glutamine amidotransferases class-II
256-424 -11.200 PF10740.9; D3FPQ2_BACPE/1-169; Domain of unknown function (DUF2529 topsan)
292-421 -16.000 16  PF01380.22; RPIR_ECOLI/137-267; SIS domain
454-607 -10.600 11  PF10432.9; B1I0X3_DESAP/201-351; Bacterial phospho-glucose isomerase C-terminal SIS domain
32 gi|15675972|ref|NP_273098.1| hypothetical protein (NMB0032) [Neisseria meningitidis MC58] 175 PfamA32U 1-175 -10.700 12  PF11032.8; F6WK07_XENTR/1-188; ApoM domain
18-103 -18.300 26  PF12992.7; F0R3P0_BACSH/23-114; Domain of unknown function, B. Theta Gene description (DUF3876 topsan)
33 gi|15675973|ref|NP_273099.1|(removed signalp:1-19) putative membrane-bound lytic murein transglycosylase A (NMB0033) [Neisseria meningitidis MC58] 422 PfamA32U 53-316 -72.800 29  PF03562.17; Q5FPS1_GLUOX/38-271; MltA specific insert domain
338-411 -12.700 39  PF06725.11; Q46212_CLOPF/19-80; 3D domain
34 gi|15675974|ref|NP_273100.1| hypothetical protein (NMB0034) [Neisseria meningitidis MC58] 279 PfamA32U 2-273 -80.100 18  PF03239.14; FTR1_YEAST/7-321; Iron permease FTR1 family
35 gi|15675975|ref|NP_273101.1|(removed signalp:1-19) hypothetical protein (NMB0035) [Neisseria meningitidis MC58] 369 PfamA32U 2-123 -19.700 11  PF06525.11; SOXE_SULAC/49-198; Sulfocyanin (SoxE) domain
130-366 -25.500 16  PF09375.10; Q0VT33_ALCBS/51-408; Imelysin
36 gi|15675976|ref|NP_273102.1|(removed signalp:1-20) hypothetical protein (NMB0036) [Neisseria meningitidis MC58] 401 PfamA32U 40-390 -103.000 100  PF04261.12; Q9K1P5_NEIMB/60-410; Dyp-type peroxidase family
37 gi|15675977|ref|NP_273103.1| phnA protein (NMB0037) [Neisseria meningitidis MC58] 109 PfamA32U 2-31 -17.200 80  PF08274.12; Q88Q12_PSEPK/3-32; PhnA Zinc-Ribbon
43-109 -38.600 73  PF03831.14; B9DUH2_STRU0/44-111; PhnA domain
38 gi|15675978|ref|NP_273104.1| UDP-N-acetylglucosamine pyrophosphorylase (NMB0038) [Neisseria meningitidis MC58] 456 PfamA32U 8-239 -23.400 17  PF00483.23; GLGC_SYNY3/15-285; Nucleotidyl transferase
108-456 -35.300 13  PF16314.5; Q5LHM9_BACFN/5-659; Domain of unknown function (DUF4954 topsan)
39 gi|15675979|ref|NP_273105.1|(removed signalp:1-21) hypothetical protein (NMB0039) [Neisseria meningitidis MC58] 69 PfamA32U 18-44 -6.130 22  PF09489.10; S6BBE6_PSERE/11-61; Probable cobalt transporter subunit (CbtB)
40 gi|15675980|ref|NP_273106.1| putative hydrolase (NMB0040) [Neisseria meningitidis MC58] 237 PfamA32U 2-218 -20.400 PF11019.8; A1SRL8_PSYIN/27-278; Protein of unknown function (DUF2608 topsan)
8-188 -50.800 17  PF13419.6; E0UR30_SULAO/3-179; Haloacid dehalogenase-like hydrolase


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Jaroszewski L, Godzik A. Clustering of highly homologous sequences to reduce the size of large protein databases. Bioinformatics. 2001 Mar;17(3):282-3.