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Filter & download results: Zscore <   Identity ≥(%)   Query residues aligned ≥(%)   Max number of homologs:   Template Database:

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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 41-60 of 2171< prev pagenext page >

# Query Length Result vs. Range Score %id Covered by template(s)
41 gi|15675981|ref|NP_273107.1|(removed signalp:1-19) ABC transporter, periplasmic solute-binding protein (NMB0041) [Neisseria meningitidis MC58] 314 PfamA32U 7-259 -40.300 16  PF01547.25; CYSP_ECOLI/33-278; Bacterial extracellular solute-binding protein
51-300 -49.200 10  PF13343.6; B3E2B9_GEOLS/96-336; Bacterial extracellular solute-binding protein
42 gi|15675982|ref|NP_273108.1| hypothetical protein (NMB0042) [Neisseria meningitidis MC58] 282 PfamA32U 70-269 -45.100 19  PF00924.18; YBIO_ECOLI/514-715; Mechanosensitive ion channel
43 gi|15675983|ref|NP_273109.1| hypothetical protein (NMB0043) [Neisseria meningitidis MC58] 161 PfamA32U 2-154 -87.500 43  PF02464.17; CINA_MOOTA/255-409; Competence-damaged protein
44 gi|15675984|ref|NP_273110.1|(removed signalp:1-29) trifunctional thioredoxin/methionine sulfoxide reductase A/B protein (NMB0044) [Neisseria meningitidis MC58] 493 PfamA32U 1-146 -9.660 12  PF09695.10; Q9KP29_VIBCH/23-182; Bacterial protein of unknown function (YtfJ_HI0045)
11-125 -16.700 25  PF00578.21; B8CZ50_HALOH/40-156; AhpC/TSA family
171-321 -79.900 39  PF01625.21; R7JJV5_9BACT/151-301; Peptide methionine sulfoxide reductase
356-476 -65.900 46  PF01641.18; I3ZC28_TERRK/26-145; SelR domain
45 gi|15675985|ref|NP_273111.1| signal recognition particle protein (NMB0045) [Neisseria meningitidis MC58] 421 PfamA32U 221-420 -75.900 63  PF00448.22; FTSY_ECOLI/293-494; SRP54-type protein, GTPase domain
46 gi|15675986|ref|NP_273112.1| hypothetical protein (NMB0046) [Neisseria meningitidis MC58] 74 PfamA32U 1-18 -5.170 27  PF16907.5; G1KFM2_ANOCA/818-906; Proline rich region of Caskin proteins
47 gi|15675987|ref|NP_273113.1| hypothetical protein (NMB0047) [Neisseria meningitidis MC58] 94 PfamA32U 5-87 -14.300 17  PF01541.24; UVRC_FRATT/22-97; GIY-YIG catalytic domain
48 gi|15675988|ref|NP_273115.1|(removed signalp:1-18) hypothetical protein (NMB0050) [Neisseria meningitidis MC58] 698 PfamA32U 26-698 -10.100 PF05478.11; F1S5C8_PIG/18-812; Prominin
43-321 -45.100 36  PF12805.7; Q6D6D1_PECAS/68-348; FUSC-like inner membrane protein yccS
358-698 -45.700 12  PF11744.8; ALMTE_ARATH/40-511; Aluminium activated malate transporter
379-503 -49.300 19  PF13515.6; A6VV37_MARMS/201-328; Fusaric acid resistance protein-like
49 gi|15675989|ref|NP_273116.1| twitching motility protein (NMB0051) [Neisseria meningitidis MC58] 408 PfamA32U 41-307 -46.300 24  PF00437.20; A6T4U8_KLEP7/120-386; Type II/IV secretion system protein
50 gi|15675990|ref|NP_273117.1| twitching motility protein PilT (NMB0052) [Neisseria meningitidis MC58] 347 PfamA32U 5-271 -47.600 33  PF00437.20; A6T4U8_KLEP7/120-386; Type II/IV secretion system protein
51 gi|15675991|ref|NP_273118.1| hypothetical protein (NMB0053) [Neisseria meningitidis MC58] 228 PfamA32U 1-225 -17.800 15  PF01168.20; Q47EJ9_DECAR/11-220; Alanine racemase, N-terminal domain
52 gi|15675992|ref|NP_273119.1|(removed signalp:1-25) hypothetical protein (NMB0054) [Neisseria meningitidis MC58] 110 PfamA32U 7-97 -7.530 22  PF17671.1; G1QCS6_MYOLU/11-162; Family of unknown function (DUF5531 topsan)
53 gi|15675993|ref|NP_273120.1| pyrroline-5-carboxylate reductase (NMB0055) [Neisseria meningitidis MC58] 263 PfamA32U 1-148 -13.700 18  PF07991.12; ILVC_METAC/15-178; Acetohydroxy acid isomeroreductase, NADPH-binding domain
2-90 -30.200 32  PF03807.17; Q21544_CAEEL/2-98; NADP oxidoreductase coenzyme F420-dependent
154-258 -56.500 30  PF14748.6; Q62T44_BACLD/162-265; Pyrroline-5-carboxylate reductase dimerisation
54 gi|15675994|ref|NP_273121.1| DnaK suppressor protein (NMB0056) [Neisseria meningitidis MC58] 138 PfamA32U 22-138 -8.070 11  PF01214.18; G8YQ71_PICSO/12-213; Casein kinase II regulatory subunit
55 gi|15675995|ref|NP_273122.1| hypothetical protein (NMB0057) [Neisseria meningitidis MC58] 118 PfamA32U 4-42 -9.670 PF10531.9; A0LNJ0_SYNFM/239-294; SLBB domain
58-117 -30.500 17  PF06514.11; PSBU_SYNE7/45-135; Photosystem II 12 kDa extrinsic protein (PsbU)
56 gi|15675996|ref|NP_273123.1| hypothetical protein (NMB0058) [Neisseria meningitidis MC58] 52 PfamA32U 22-45 -6.460 29  PF18322.1; T1ISX7_STRMM/710-775; Serine protease Clip domain PPAF-2
57 gi|15675997|ref|NP_273124.1| dnaJ protein (NMB0059) [Neisseria meningitidis MC58] 373 PfamA32U 5-67 -39.500 60  PF00226.31; Q22028_CAEEL/17-79; DnaJ domain
28-204 -9.870 PF05458.12; SIVA_HUMAN/1-175; Cd27 binding protein (Siva)
120-333 -76.700 31  PF01556.18; T0NBZ6_9EURY/129-343; DnaJ C terminal domain
58 gi|15675998|ref|NP_273125.1| hypothetical protein (NMB0060) [Neisseria meningitidis MC58] 672 PfamA32U 15-622 -39.600 12  PF03169.15; Q9P939_SCHCO/80-743; OPT oligopeptide transporter protein
59 gi|15675999|ref|NP_273126.1| glucose-1-phosphate thymidylyltransferase (NMB0062) [Neisseria meningitidis MC58] 288 PfamA32U 3-239 -60.100 22  PF00483.23; GLGC_SYNY3/15-285; Nucleotidyl transferase
60 gi|15676000|ref|NP_273127.1| dTDP-D-glucose 4,6-dehydratase (NMB0063) [Neisseria meningitidis MC58] 355 PfamA32U 4-252 -106.000 91  PF01370.21; RMLB_NEIGO/9-257; NAD dependent epimerase/dehydratase family
5-327 -79.100 21  PF16363.5; A5G6F3_GEOUR/5-333; GDP-mannose 4,6 dehydratase


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Li Z, and Godzik A. Modeling and Analyzing Three-Dimensional Structures of Human Disease Proteins Pacific Symposium on Biocomputing 11:439-450(2006) [PDF]