current user: public

If you have questions about the server, please let us know.

Filter & download results: Zscore <   Identity ≥(%)   Query residues aligned ≥(%)   Max number of homologs:   Template Database:

Page size:   Sort by score   Show only entries containing string:

Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 17691next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 PF10417.9; A4AVJ3_MARSH/157-196; C-terminal domain of 1-Cys peroxiredoxin 40 CSGID 1-40 -19.900 40  IDP92083 peroxidoxin 2 [Toxoplasma gondii ME49] TGME49_109210 [Toxoplasma gondii ME49]
2 PF12574.8; A0A0F3MK43_9RICK/404-636; 120 KDa Rickettsia surface antigen 233 CSGID 104-233 -7.490 14  IDP04105 gene: ribC; riboflavin synthase alpha chain [Yersinia pestis CO92] YPO2391 [Yersinia pestis CO92]
3 PF09847.9; O29125_ARCFU/30-435; Membrane protein of 12 TMs 406 CSGID 215-404 -6.110 11  IDP00408 gene: ccmB; heme exporter protein B YPO2735 [Yersinia pestis CO92]
4 PF00244.20; G1K9B0_ANOCA/9-229; 14-3-3 protein 221 CSGID 1-215 -8.210 14  IDP91388 TPR repeat-containing protein [Vibrio vulnificus CMCP6] VV1_1438 [Vibrio vulnificus CMCP6]
5 PF16998.5; B9JAN2_AGRRK/36-151; 17 kDa outer membrane surface antigen 116 CSGID 5-103 -6.950 10  IDP04641 gene: mutM; formamidopyrimidine-DNA glycosylase [Francisella tularensis subsp. tularensis SCHU S4] FTT0693c [Francisella tularensis subsp. tularensis SCHU S4]
6 PF00389.30; Q9KCG9_BACHD/20-325; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 306 CSGID 1-306 -106.000 36  IDP02277 glycerate dehydrogenase [Bacillus anthracis str. `Ames Ancestor`] GBAA1434 [Bacillus anthracis str. `Ames Ancestor`]
7 PF02826.19; Q98GE4_RHILO/107-283; D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 177 CSGID 1-177 -72.300 31  IDP02277 glycerate dehydrogenase [Bacillus anthracis str. `Ames Ancestor`] GBAA1434 [Bacillus anthracis str. `Ames Ancestor`]
8 PF00198.23; A4ICH2_LEIIN/226-463; 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 238 CSGID 1-238 -92.500 28  IDP02321 gene: sucB; dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex [Francisella tularensis subsp. tularensis SCHU S4] FTT0077 [Francisella tularensis subsp. tularensis SCHU S4]
9 PF16078.5; H6C9R5_EXODN/72-112; 2-oxoglutarate dehydrogenase N-terminus 41 CSGID 1-41 -17.300 31  IDP00567 gene: kgd; alpha-ketoglutarate decarboxylase YPO1113 [Yersinia pestis CO92]
10 PF04029.14; H1YDD2_9SPHI/8-231; 2-phosphosulpholactate phosphatase 224 CSGID 14-119 -6.320 IDP01029 gene: cheY; chemotaxis regulator transmitting signal to flagellar motor component STM1916 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
11 PF16620.5; L5L3U3_PTEAL/250-410; Unstructured linker between I-set domains 2 and 3 on MYLCK 161 CSGID 5-161 -14.600 12  IDP91521 C2 domain-containing protein [Toxoplasma gondii ME49] TGME49_040910 [Toxoplasma gondii ME49]
12 PF05635.11; K7WXD0_9NOST/8-110; 23S rRNA-intervening sequence protein 103 CSGID 27-64 -5.610 13  IDP90783 gene: uppP; undecaprenyl pyrophosphate phosphatase [Yersinia pestis CO92] YPO0649 [Yersinia pestis CO92]
13 PF08521.10; B1Y781_LEPCP/20-172; Two-component sensor kinase N-terminal 153 CSGID 1-153 -24.200 15  IDP90007 gene: qseC; quorum sensing Escherichia coli regulator C [Escherichia coli O157:H7 EDL933] Z4378 [Escherichia coli O157:H7 str. EDL933]
14 PF08793.10; Q0E553_SFAVA/142-176; 2-cysteine adaptor domain 35 CSGID 4-35 -3.670 34  IDP02637 gene: pagK; PagK [Salmonella typhimurium LT2] STM1867 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
15 PF11591.8; A1YQX2_VOLCA/1-34; Ferredoxin chloroplastic transit peptide 34 CSGID 6-31 -3.280 IDP02689 hypothetical protein FTT0903 [Francisella tularensis subsp. tularensis SCHU S4] FTT0903 [Francisella tularensis subsp. tularensis SCHU S4]
16 PF01257.19; Q1HPR5_BOMMO/56-203; Thioredoxin-like [2Fe-2S] ferredoxin 148 CSGID 9-148 -6.910 15  IDP00729 ABC transporter, ATP-binding protein SACOL2356 [Staphylococcus aureus subsp. aureus COL]
17 PF08975.10; B9JYZ4_AGRVS/31-145; Domain of unknown function (DUF1868 topsan) 115 CSGID 5-95 -5.280 15  IDP06160 gene: folE; GTP cyclohydrolase I [Helicobacter pylori J99] NP_223581 [Helicobacter pylori J99]
18 PF03390.15; Q5WJJ9_BACSK/33-442; 2-hydroxycarboxylate transporter family 410 CSGID 5-410 -5.860 10  IDP91361 NhaP-type Na+/H+ and K+/H+ antiporters [Vibrio vulnificus CMCP6] VV1_2840 [Vibrio vulnificus CMCP6]
19 PF03171.20; ACCO1_ARATH/158-259; 2OG-Fe(II) oxygenase superfamily 102 CSGID 1-102 -45.800 36  IDP00483 putative iron/ascorbate oxidoreductase family protein YPO1316 [Yersinia pestis CO92]
20 PF13532.6; D0N998_PHYIT/73-283; 2OG-Fe(II) oxygenase superfamily 211 CSGID 110-205 -7.900 13  IDP90534 gene: ssb; single-strand DNA-binding protein [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj1071 [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]

FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 5 8 7   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Jaroszewski L, Godzik A. Clustering of highly homologous sequences to reduce the size of large protein databases. Bioinformatics. 2001 Mar;17(3):282-3.