FFAS03 list of results PfamA32U / CSGID

Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 17691 next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 PF10417.9; A4AVJ3_MARSH/157-196; C-terminal domain of 1-Cys peroxiredoxin 40 CSGID 1-40 -19.900 40 IDP92083 peroxidoxin 2 [Toxoplasma gondii ME49] TGME49_109210 [Toxoplasma gondii ME49]
2 PF12574.8; A0A0F3MK43_9RICK/404-636; 120 KDa Rickettsia surface antigen 233 CSGID 104-233 -7.490 14 IDP04105 gene: ribC; riboflavin synthase alpha chain [Yersinia pestis CO92] YPO2391 [Yersinia pestis CO92]
3 PF09847.9; O29125_ARCFU/30-435; Membrane protein of 12 TMs 406 CSGID 215-404 -6.110 11 IDP00408 gene: ccmB; heme exporter protein B YPO2735 [Yersinia pestis CO92]
4 PF00244.20; G1K9B0_ANOCA/9-229; 14-3-3 protein 221 CSGID 1-215 -8.210 14 IDP91388 TPR repeat-containing protein [Vibrio vulnificus CMCP6] VV1_1438 [Vibrio vulnificus CMCP6]
5 PF16998.5; B9JAN2_AGRRK/36-151; 17 kDa outer membrane surface antigen 116 CSGID 5-103 -6.950 10 IDP04641 gene: mutM; formamidopyrimidine-DNA glycosylase [Francisella tularensis subsp. tularensis SCHU S4] FTT0693c [Francisella tularensis subsp. tularensis SCHU S4]
6 PF00389.30; Q9KCG9_BACHD/20-325; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 306 CSGID 1-306 -106.000 36 IDP02277 glycerate dehydrogenase [Bacillus anthracis str. `Ames Ancestor`] GBAA1434 [Bacillus anthracis str. `Ames Ancestor`]
7 PF02826.19; Q98GE4_RHILO/107-283; D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 177 CSGID 1-177 -72.300 31 IDP02277 glycerate dehydrogenase [Bacillus anthracis str. `Ames Ancestor`] GBAA1434 [Bacillus anthracis str. `Ames Ancestor`]
8 PF00198.23; A4ICH2_LEIIN/226-463; 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 238 CSGID 1-238 -92.500 28 IDP02321 gene: sucB; dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex [Francisella tularensis subsp. tularensis SCHU S4] FTT0077 [Francisella tularensis subsp. tularensis SCHU S4]
9 PF16078.5; H6C9R5_EXODN/72-112; 2-oxoglutarate dehydrogenase N-terminus 41 CSGID 1-41 -17.300 31 IDP00567 gene: kgd; alpha-ketoglutarate decarboxylase YPO1113 [Yersinia pestis CO92]
10 PF04029.14; H1YDD2_9SPHI/8-231; 2-phosphosulpholactate phosphatase 224 CSGID 14-119 -6.320 8 IDP01029 gene: cheY; chemotaxis regulator transmitting signal to flagellar motor component STM1916 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
11 PF16620.5; L5L3U3_PTEAL/250-410; Unstructured linker between I-set domains 2 and 3 on MYLCK 161 CSGID 5-161 -14.600 12 IDP91521 C2 domain-containing protein [Toxoplasma gondii ME49] TGME49_040910 [Toxoplasma gondii ME49]
12 PF05635.11; K7WXD0_9NOST/8-110; 23S rRNA-intervening sequence protein 103 CSGID 27-64 -5.610 13 IDP90783 gene: uppP; undecaprenyl pyrophosphate phosphatase [Yersinia pestis CO92] YPO0649 [Yersinia pestis CO92]
13 PF08521.10; B1Y781_LEPCP/20-172; Two-component sensor kinase N-terminal 153 CSGID 1-153 -24.200 15 IDP90007 gene: qseC; quorum sensing Escherichia coli regulator C [Escherichia coli O157:H7 EDL933] Z4378 [Escherichia coli O157:H7 str. EDL933]
14 PF08793.10; Q0E553_SFAVA/142-176; 2-cysteine adaptor domain 35 CSGID 4-35 -3.670 34 IDP02637 gene: pagK; PagK [Salmonella typhimurium LT2] STM1867 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
15 PF11591.8; A1YQX2_VOLCA/1-34; Ferredoxin chloroplastic transit peptide 34 CSGID 6-31 -3.280 3 IDP02689 hypothetical protein FTT0903 [Francisella tularensis subsp. tularensis SCHU S4] FTT0903 [Francisella tularensis subsp. tularensis SCHU S4]
16 PF01257.19; Q1HPR5_BOMMO/56-203; Thioredoxin-like [2Fe-2S] ferredoxin 148 CSGID 9-148 -6.910 15 IDP00729 ABC transporter, ATP-binding protein SACOL2356 [Staphylococcus aureus subsp. aureus COL]
17 PF08975.10; B9JYZ4_AGRVS/31-145; Domain of unknown function (DUF1868 topsan) 115 CSGID 5-95 -5.280 15 IDP06160 gene: folE; GTP cyclohydrolase I [Helicobacter pylori J99] NP_223581 [Helicobacter pylori J99]
18 PF03390.15; Q5WJJ9_BACSK/33-442; 2-hydroxycarboxylate transporter family 410 CSGID 5-410 -5.860 10 IDP91361 NhaP-type Na+/H+ and K+/H+ antiporters [Vibrio vulnificus CMCP6] VV1_2840 [Vibrio vulnificus CMCP6]
19 PF03171.20; ACCO1_ARATH/158-259; 2OG-Fe(II) oxygenase superfamily 102 CSGID 1-102 -45.800 36 IDP00483 putative iron/ascorbate oxidoreductase family protein YPO1316 [Yersinia pestis CO92]
20 PF13532.6; D0N998_PHYIT/73-283; 2OG-Fe(II) oxygenase superfamily 211 CSGID 110-205 -7.900 13 IDP90534 gene: ssb; single-strand DNA-binding protein [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj1071 [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]

FFAS is supported by the NIH grant R01-GM087218-01

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#	Query	Length	Result vs.	Range	Score	%id	Covered by template(s)
1	`PF10417.9; A4AVJ3_MARSH/157-196; C-terminal domain of 1-Cys peroxiredoxin`	`40`	`CSGID`	`1-40`	`-19.900`	`40`	`IDP92083 peroxidoxin 2 [Toxoplasma gondii ME49] TGME49_109210 [Toxoplasma gondii ME49]`
2	`PF12574.8; A0A0F3MK43_9RICK/404-636; 120 KDa Rickettsia surface antigen`	`233`	`CSGID`	`104-233`	`-7.490`	`14`	`IDP04105 gene: ribC; riboflavin synthase alpha chain [Yersinia pestis CO92] YPO2391 [Yersinia pestis CO92]`
3	`PF09847.9; O29125_ARCFU/30-435; Membrane protein of 12 TMs`	`406`	`CSGID`	`215-404`	`-6.110`	`11`	`IDP00408 gene: ccmB; heme exporter protein B YPO2735 [Yersinia pestis CO92]`
4	`PF00244.20; G1K9B0_ANOCA/9-229; 14-3-3 protein`	`221`	`CSGID`	`1-215`	`-8.210`	`14`	`IDP91388 TPR repeat-containing protein [Vibrio vulnificus CMCP6] VV1_1438 [Vibrio vulnificus CMCP6]`
5	`PF16998.5; B9JAN2_AGRRK/36-151; 17 kDa outer membrane surface antigen`	`116`	`CSGID`	`5-103`	`-6.950`	`10`	`IDP04641 gene: mutM; formamidopyrimidine-DNA glycosylase [Francisella tularensis subsp. tularensis SCHU S4] FTT0693c [Francisella tularensis subsp. tularensis SCHU S4]`
6	`PF00389.30; Q9KCG9_BACHD/20-325; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain`	`306`	`CSGID`	`1-306`	`-106.000`	`36`	IDP02277 glycerate dehydrogenase [Bacillus anthracis str. `Ames Ancestor`] GBAA1434 [Bacillus anthracis str. `Ames Ancestor`]
7	`PF02826.19; Q98GE4_RHILO/107-283; D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain`	`177`	`CSGID`	`1-177`	`-72.300`	`31`	IDP02277 glycerate dehydrogenase [Bacillus anthracis str. `Ames Ancestor`] GBAA1434 [Bacillus anthracis str. `Ames Ancestor`]
8	`PF00198.23; A4ICH2_LEIIN/226-463; 2-oxoacid dehydrogenases acyltransferase (catalytic domain)`	`238`	`CSGID`	`1-238`	`-92.500`	`28`	`IDP02321 gene: sucB; dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex [Francisella tularensis subsp. tularensis SCHU S4] FTT0077 [Francisella tularensis subsp. tularensis SCHU S4]`
9	`PF16078.5; H6C9R5_EXODN/72-112; 2-oxoglutarate dehydrogenase N-terminus`	`41`	`CSGID`	`1-41`	`-17.300`	`31`	`IDP00567 gene: kgd; alpha-ketoglutarate decarboxylase YPO1113 [Yersinia pestis CO92]`
10	`PF04029.14; H1YDD2_9SPHI/8-231; 2-phosphosulpholactate phosphatase`	`224`	`CSGID`	`14-119`	`-6.320`	`8`	`IDP01029 gene: cheY; chemotaxis regulator transmitting signal to flagellar motor component STM1916 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]`
11	`PF16620.5; L5L3U3_PTEAL/250-410; Unstructured linker between I-set domains 2 and 3 on MYLCK`	`161`	`CSGID`	`5-161`	`-14.600`	`12`	`IDP91521 C2 domain-containing protein [Toxoplasma gondii ME49] TGME49_040910 [Toxoplasma gondii ME49]`
12	`PF05635.11; K7WXD0_9NOST/8-110; 23S rRNA-intervening sequence protein`	`103`	`CSGID`	`27-64`	`-5.610`	`13`	`IDP90783 gene: uppP; undecaprenyl pyrophosphate phosphatase [Yersinia pestis CO92] YPO0649 [Yersinia pestis CO92]`
13	`PF08521.10; B1Y781_LEPCP/20-172; Two-component sensor kinase N-terminal`	`153`	`CSGID`	`1-153`	`-24.200`	`15`	`IDP90007 gene: qseC; quorum sensing Escherichia coli regulator C [Escherichia coli O157:H7 EDL933] Z4378 [Escherichia coli O157:H7 str. EDL933]`
14	`PF08793.10; Q0E553_SFAVA/142-176; 2-cysteine adaptor domain`	`35`	`CSGID`	`4-35`	`-3.670`	`34`	`IDP02637 gene: pagK; PagK [Salmonella typhimurium LT2] STM1867 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]`
15	`PF11591.8; A1YQX2_VOLCA/1-34; Ferredoxin chloroplastic transit peptide`	`34`	`CSGID`	`6-31`	`-3.280`	`3`	`IDP02689 hypothetical protein FTT0903 [Francisella tularensis subsp. tularensis SCHU S4] FTT0903 [Francisella tularensis subsp. tularensis SCHU S4]`
16	`PF01257.19; Q1HPR5_BOMMO/56-203; Thioredoxin-like [2Fe-2S] ferredoxin`	`148`	`CSGID`	`9-148`	`-6.910`	`15`	`IDP00729 ABC transporter, ATP-binding protein SACOL2356 [Staphylococcus aureus subsp. aureus COL]`
17	`PF08975.10; B9JYZ4_AGRVS/31-145; Domain of unknown function (DUF1868 topsan)`	`115`	`CSGID`	`5-95`	`-5.280`	`15`	`IDP06160 gene: folE; GTP cyclohydrolase I [Helicobacter pylori J99] NP_223581 [Helicobacter pylori J99]`
18	`PF03390.15; Q5WJJ9_BACSK/33-442; 2-hydroxycarboxylate transporter family`	`410`	`CSGID`	`5-410`	`-5.860`	`10`	`IDP91361 NhaP-type Na+/H+ and K+/H+ antiporters [Vibrio vulnificus CMCP6] VV1_2840 [Vibrio vulnificus CMCP6]`
19	`PF03171.20; ACCO1_ARATH/158-259; 2OG-Fe(II) oxygenase superfamily`	`102`	`CSGID`	`1-102`	`-45.800`	`36`	`IDP00483 putative iron/ascorbate oxidoreductase family protein YPO1316 [Yersinia pestis CO92]`
20	`PF13532.6; D0N998_PHYIT/73-283; 2OG-Fe(II) oxygenase superfamily`	`211`	`CSGID`	`110-205`	`-7.900`	`13`	`IDP90534 gene: ssb; single-strand DNA-binding protein [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj1071 [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]`