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Filter & download results: Zscore <   Identity ≥(%)   Query residues aligned ≥(%)   Max number of homologs:   Template Database:
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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 2876next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|15922991|ref|NP_370525.1| chromosomal replication initiation protein (SAV0001) [Staphylococcus aureus subsp. aureus Mu50] 453 PfamA32U 4-67 -17.500 20  PF11638.8; DNAA_LAWIP/5-67; DnaA N-terminal domain
116-334 -100.000 64  PF00308.18; DNAA_STRCO/317-535; Bacterial dnaA protein
152-453 -10.000 13  PF03969.16; ZAPE_ECOLI/4-371; AFG1-like ATPase
361-429 -34.400 69  PF08299.11; D9QS97_ACEAZ/358-426; Bacterial dnaA protein helix-turn-helix
2 gi|15922992|ref|NP_370526.1| DNA polymerase III subunit beta (SAV0002) [Staphylococcus aureus subsp. aureus Mu50] 377 PfamA32U 2-127 -43.800 27  PF00712.19; DPO3B_CAUVC/1-121; DNA polymerase III beta subunit, N-terminal domain
137-251 -52.300 28  PF02767.16; DPO3B_PSEPK/129-244; DNA polymerase III beta subunit, central domain
253-375 -52.400 49  PF02768.15; DPO3B_BACSU/253-376; DNA polymerase III beta subunit, C-terminal domain
3 gi|15922993|ref|NP_370527.1| hypothetical protein (SAV0003) [Staphylococcus aureus subsp. aureus Mu50] 81 PfamA32U 7-70 -31.900 34  PF13275.6; D4IXS8_BUTFI/4-68; S4 domain
4 gi|15922994|ref|NP_370528.1| recombination protein F (SAV0004) [Staphylococcus aureus subsp. aureus Mu50] 370 PfamA32U 1-350 -24.000 12  PF13175.6; I1YS32_PREI7/1-378; AAA ATPase domain
5 gi|15922995|ref|NP_370529.1| DNA gyrase subunit B (SAV0005) [Staphylococcus aureus subsp. aureus Mu50] 644 PfamA32U 43-147 -13.800 15  PF13589.6; A5G4D8_GEOUR/22-165; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
232-402 -60.900 44  PF00204.25; A9KS52_LACP7/226-396; DNA gyrase B
540-643 -36.900 18  PF16898.5; K5XBZ3_PHACS/641-767; C-terminal associated domain of TOPRIM
6 gi|15922996|ref|NP_370530.1| DNA gyrase subunit A (SAV0006) [Staphylococcus aureus subsp. aureus Mu50] 889 PfamA32U 33-473 -62.600 20  PF00521.20; A0A0D1DXS4_USTMA/785-1232; DNA gyrase/topoisomerase IV, subunit A
7 gi|15922997|ref|NP_370531.1| hypothetical protein (SAV0007) [Staphylococcus aureus subsp. aureus Mu50] 276 PfamA32U 30-269 -76.700 29  PF01256.17; NNRD_BACSU/30-270; Carbohydrate kinase
8 gi|161375866|ref|NP_370532.2| histidine ammonia-lyase (SAV0008) [Staphylococcus aureus subsp. aureus Mu50] 504 PfamA32U 10-471 -129.000 38  PF00221.19; HUTH_IDILO/11-471; Aromatic amino acid lyase
9 gi|15922999|ref|NP_370533.1| seryl-tRNA synthetase (SAV0009) [Staphylococcus aureus subsp. aureus Mu50] 428 PfamA32U 1-108 -30.600 25  PF02403.22; C5WTV8_SORBI/1-114; Seryl-tRNA synthetase N-terminal domain
218-400 -13.500 14  PF00587.25; SYT_ECOLI/318-529; tRNA synthetase class II core domain (G, H, P, S and T)
10 gi|15923000|ref|NP_370534.1| hypothetical protein (SAV0010) [Staphylococcus aureus subsp. aureus Mu50] 231 PfamA32U 16-156 -74.000 30  PF03591.14; I0I5R9_CALAS/20-162; AzlC protein
11 gi|15923001|ref|NP_370535.1|(removed signalp:1-29) hypothetical protein (SAV0011) [Staphylococcus aureus subsp. aureus Mu50] 80 PfamA32U 1-76 -18.600 14  PF05437.12; Q8NTP7_CORGL/8-105; Branched-chain amino acid transport protein (AzlD)
12 gi|15923002|ref|NP_370536.1| putative homoserine-o-acetyltransferase (SAV0012) [Staphylococcus aureus subsp. aureus Mu50] 329 PfamA32U 28-323 -34.700 11  PF03096.14; NDRG2_HUMAN/40-318; Ndr family
13 gi|15923003|ref|NP_370537.1| hypothetical protein (SAV0013) [Staphylococcus aureus subsp. aureus Mu50] 331 PfamA32U 37-317 -52.200 23  PF09991.9; U5LGL3_9BACI/15-301; Predicted membrane protein (DUF2232 topsan)
14 gi|15923004|ref|NP_370538.1|(removed signalp:1-32) hypothetical protein (SAV0014) [Staphylococcus aureus subsp. aureus Mu50] 623 PfamA32U 74-268 -14.800 11  PF05165.12; GCH3_METTH/1-249; GTP cyclohydrolase III
485-617 -28.300 19  PF02272.19; Y1633_METJA/328-463; DHHA1 domain
15 gi|15923005|ref|NP_370539.1| 50S ribosomal protein L9 (SAV0015) [Staphylococcus aureus subsp. aureus Mu50] 148 PfamA32U 1-47 -32.400 57  PF01281.19; RL9_FERNB/1-47; Ribosomal protein L9, N-terminal domain
63-147 -41.400 34  PF03948.14; R7G1M1_9FIRM/63-146; Ribosomal protein L9, C-terminal domain
16 gi|15923006|ref|NP_370540.1| replicative DNA helicase (SAV0016) [Staphylococcus aureus subsp. aureus Mu50] 466 PfamA32U 9-111 -46.100 37  PF00772.21; Q1MZU6_9GAMM/10-112; DnaB-like helicase N terminal domain
185-457 -98.000 47  PF03796.15; Q4K7N7_PSEF5/180-438; DnaB-like helicase C terminal domain
17 gi|15923007|ref|NP_370541.1| adenylosuccinate synthetase (SAV0017) [Staphylococcus aureus subsp. aureus Mu50] 427 PfamA32U 4-421 -129.000 40  PF00709.21; S3D6Z3_GLAL2/4-421; Adenylosuccinate synthetase
18 gi|15923008|ref|NP_370542.1| response regulator (SAV0018) [Staphylococcus aureus subsp. aureus Mu50] 235 PfamA32U 1-217 -55.200 13  PF01993.18; F6D7B4_METPW/3-276; methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase
19 gi|15923009|ref|NP_370543.1| two-component sensor histidine kinase (SAV0019) [Staphylococcus aureus subsp. aureus Mu50] 608 PfamA32U 1-182 -12.700 13  PF10144.9; SMP_YERPE/1-162; Bacterial virulence factor haemolysin
39-169 -22.100 16  PF16736.5; Q65G91_BACLD/33-148; Single Cache-like
202-253 -16.100 34  PF00672.25; P71914_MYCTU/462-514; HAMP domain
265-367 -13.800 10  PF13596.6; C1CZ44_DEIDV/745-850; PAS domain
376-442 -21.700 29  PF00512.25; Q55783_SYNY3/185-253; His Kinase A (phospho-acceptor) domain
486-598 -44.900 35  PF02518.26; O52937_9CYAN/626-739; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
20 gi|15923010|ref|NP_370544.1| hypothetical protein (SAV0020) [Staphylococcus aureus subsp. aureus Mu50] 453 PfamA32U 14-453 -95.500 21  PF07435.11; Q8YA70_LISMO/5-440; YycH protein

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rychlewski L, Zhang B, Godzik A. Functional insights from structural predictions: analysis of the Escherichia coli genome. Protein Sci. 1999 Mar;8(3):614-24.