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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 2876next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|15922991|ref|NP_370525.1| chromosomal replication initiation protein (SAV0001) [Staphylococcus aureus subsp. aureus Mu50] 453 SCOP207 114-329 -93.000 37  d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}
346-452 -42.700 34  d1l8qa1 a.4.12.2 (A:290-399) Chromosomal replication initiation factor DnaA C-terminal domain IV {Aquifex aeolicus [TaxId: 63363]}
2 gi|15922992|ref|NP_370526.1| DNA polymerase III subunit beta (SAV0002) [Staphylococcus aureus subsp. aureus Mu50] 377 SCOP207 1-130 -52.100 18  d5w7za1 d.131.1.0 (A:1-122) automated matches {Rickettsia conorii [TaxId: 272944]}
131-252 -55.600 27  d4k3la2 d.131.1.1 (A:123-244) DNA polymerase III, beta subunit {Escherichia coli [TaxId: 562]}
253-375 -50.700 21  d4k3la3 d.131.1.1 (A:245-365) DNA polymerase III, beta subunit {Escherichia coli [TaxId: 562]}
3 gi|15922993|ref|NP_370527.1| hypothetical protein (SAV0003) [Staphylococcus aureus subsp. aureus Mu50] 81 SCOP207 10-70 -34.000 27  d1p9ka1 d.66.1.6 (A:3-79) Hypothetical protein YbcJ {Escherichia coli [TaxId: 562]}
4 gi|15922994|ref|NP_370528.1| recombination protein F (SAV0004) [Staphylococcus aureus subsp. aureus Mu50] 370 SCOP207 1-348 -30.600 14  g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Pyrococcus furiosus [TaxId: 2261]}
5 gi|15922995|ref|NP_370529.1| DNA gyrase subunit B (SAV0005) [Staphylococcus aureus subsp. aureus Mu50] 644 SCOP207 24-228 -85.200 63  d4k4oa1 d.122.1.0 (A:18-224) automated matches {Enterococcus faecalis [TaxId: 226185]}
232-403 -59.900 40  d1kija1 d.14.1.3 (A:221-392) DNA gyrase B {Thermus thermophilus [TaxId: 274]}
405-643 -50.100 27  d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment (residues 410-1202) {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
424-624 -95.900 58  d3m4ia_ e.78.1.1 (A:) DNA gyrase beta-prime domain {Mycobacterium tuberculosis [TaxId: 1773]}
6 gi|15922996|ref|NP_370530.1| DNA gyrase subunit A (SAV0006) [Staphylococcus aureus subsp. aureus Mu50] 889 SCOP207 31-489 -110.000 56  d3ilwa_ e.11.1.0 (A:) automated matches {Mycobacterium tuberculosis [TaxId: 1773]}
503-812 -36.200 35  d4g3na_ b.68.10.0 (A:) automated matches {Mycobacterium tuberculosis [TaxId: 83332]}
7 gi|15922997|ref|NP_370531.1| hypothetical protein (SAV0007) [Staphylococcus aureus subsp. aureus Mu50] 276 SCOP207 4-276 -95.200 45  d2r3ba1 c.72.1.0 (A:1-276) automated matches {Enterococcus faecalis [TaxId: 226185]}
8 gi|161375866|ref|NP_370532.2| histidine ammonia-lyase (SAV0008) [Staphylococcus aureus subsp. aureus Mu50] 504 SCOP207 2-503 -137.000 38  d1gkma_ a.127.1.2 (A:) Histidine ammonia-lyase (HAL) {Pseudomonas putida [TaxId: 303]}
9 gi|15922999|ref|NP_370533.1| seryl-tRNA synthetase (SAV0009) [Staphylococcus aureus subsp. aureus Mu50] 428 SCOP207 1-113 -33.800 23  d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
116-425 -112.000 39  d1seta2 d.104.1.1 (A:111-421) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
10 gi|15923000|ref|NP_370534.1| hypothetical protein (SAV0010) [Staphylococcus aureus subsp. aureus Mu50] 231 SCOP207 25-97 -6.940 8  d1pp9g_ f.23.13.1 (G:) Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
11 gi|15923001|ref|NP_370535.1|(removed signalp:1-29) hypothetical protein (SAV0011) [Staphylococcus aureus subsp. aureus Mu50] 80 SCOP207 1-26 -5.600 19  d1p8ba_ g.3.6.4 (A:) Pab1, subunit b {Pea (Pisum sativum) [TaxId: 3888]}
12 gi|15923002|ref|NP_370536.1| putative homoserine-o-acetyltransferase (SAV0012) [Staphylococcus aureus subsp. aureus Mu50] 329 SCOP207 9-324 -106.000 26  d2b61a1 c.69.1.40 (A:2-358) Homoserine O-acetyltransferase {Haemophilus influenzae [TaxId: 727]}
13 gi|15923003|ref|NP_370537.1| hypothetical protein (SAV0013) [Staphylococcus aureus subsp. aureus Mu50] 331 SCOP207 8-82 -9.040 26  d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}
14 gi|15923004|ref|NP_370538.1|(removed signalp:1-32) hypothetical protein (SAV0014) [Staphylococcus aureus subsp. aureus Mu50] 623 SCOP207 122-267 -14.400 15  d2v0na3 d.58.29.2 (A:294-454) Response regulator PleD, C-terminal domain {Caulobacter crescentus [TaxId: 155892]}
304-618 -37.500 14  d1k20a_ c.107.1.1 (A:) Manganese-dependent inorganic pyrophosphatase (family II) {Streptococcus gordonii [TaxId: 1302]}
15 gi|15923005|ref|NP_370539.1| 50S ribosomal protein L9 (SAV0015) [Staphylococcus aureus subsp. aureus Mu50] 148 SCOP207 1-52 -34.800 69  d2hbaa1 d.100.1.1 (A:1-52) Ribosomal protein L9 N-domain {Bacillus stearothermophilus [TaxId: 1422]}
56-148 -47.200 54  d1diva1 d.99.1.1 (A:56-149) Ribosomal protein L9 C-domain {Bacillus stearothermophilus [TaxId: 1422]}
16 gi|15923006|ref|NP_370540.1| replicative DNA helicase (SAV0016) [Staphylococcus aureus subsp. aureus Mu50] 466 SCOP207 10-111 -46.400 43  d1b79a_ a.81.1.1 (A:) N-terminal domain of DnaB helicase {Escherichia coli [TaxId: 562]}
169-457 -55.600 17  d1cr1a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}
17 gi|15923007|ref|NP_370541.1| adenylosuccinate synthetase (SAV0017) [Staphylococcus aureus subsp. aureus Mu50] 427 SCOP207 1-423 -135.000 71  d4m9da_ c.37.1.0 (A:) automated matches {Bacillus anthracis [TaxId: 261594]}
18 gi|15923008|ref|NP_370542.1| response regulator (SAV0018) [Staphylococcus aureus subsp. aureus Mu50] 235 SCOP207 4-124 -64.800 30  d2qzja_ c.23.1.0 (A:) automated matches {Clostridium difficile [TaxId: 272563]}
4-174 -54.900 19  d3rqia_ c.23.1.0 (A:) automated matches {Burkholderia pseudomallei [TaxId: 320372]}
137-235 -49.400 78  d2hwva1 a.4.6.0 (A:134-232) automated matches {Enterococcus faecalis [TaxId: 226185]}
19 gi|15923009|ref|NP_370543.1| two-component sensor histidine kinase (SAV0019) [Staphylococcus aureus subsp. aureus Mu50] 608 SCOP207 247-366 -13.800 11  d1nwza_ d.110.3.1 (A:) Photoactive yellow protein, PYP {Methylophilus methylotrophus, strain w3a1 [TaxId: 17]}
358-444 -40.900 29  d2c2aa1 a.30.2.1 (A:232-320) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]}
445-601 -55.000 36  d2c2aa2 d.122.1.3 (A:321-481) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]}
20 gi|15923010|ref|NP_370544.1| hypothetical protein (SAV0020) [Staphylococcus aureus subsp. aureus Mu50] 453 SCOP207 1-55 -4.960 13  d3jbre_ f.63.1.1 (E:) L-type calcium channel Gamma-1 subunit {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rodrigues AP, Grant BJ, Godzik A, Friedberg I. The 2006 automated function prediction meeting. BMC Bioinformatics. 2007 May 22;8 Suppl 4:S1-4.