FFAS03 list of results S.cerevisiae / CSGID

Shows best template from each database, and all templates with significant scores covering different query fragments

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# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|6319249|ref|NP_009332.1|(removed signalp:1-20) hypothetical protein; Pau8p (YAL068C) [Saccharomyces cerevisiae] 100 CSGID 10-100 -6.790 7 IDP92617 hypothetical protein SAUSA300_1868 [Staphylococcus aureus subsp. aureus USA300_FPR3757] SAUSA300_1868 [Staphylococcus aureus subsp. aureus USA300_FPR3757]
2 gi|33438754|ref|NP_878038.1| Putative protein of unknown function; identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching; Yal067w-ap (YAL067W-A) [Saccharomyces cerevisiae] 75 CSGID 11-63 -5.030 22 IDP91344 hypothetical protein VV2_0026 [Vibrio vulnificus CMCP6] VV2_0026 [Vibrio vulnificus CMCP6]
3 gi|6319250|ref|NP_009333.1| Putative permease, member of the allantoate transporter subfamily of the major facilitator superfamily; mutation confers resistance to ethionine sulfoxide; Seo1p (YAL067C) [Saccharomyces cerevisiae] 593 CSGID 133-550 -44.600 14 IDP04335 putative transport protein [Salmonella typhimurium LT2] STM1543_1_428 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
4 gi|6319252|ref|NP_009335.1| Putative protein of unknown function; has homology to FLO1; possible pseudogene; (YAL065C) [Saccharomyces cerevisiae] 128 CSGID 3-104 -6.390 9 IDP91521 C2 domain-containing protein [Toxoplasma gondii ME49] TGME49_040910 [Toxoplasma gondii ME49]
5 gi|6319253|ref|NP_009336.1| Fungal-specific protein of unknown function; Yal064w-bp (YAL064W-B) [Saccharomyces cerevisiae] 126 CSGID 1-97 -6.200 20 CPX_91710_91752 Complex of NXF1_HUMAN with TIP_SHV2C [Undefined organism]
6 gi|7839146|ref|NP_058136.1| Putative protein of unknown function; YAL064C-A is not an essential gene; Yal064c-ap (YAL064C-A) [Saccharomyces cerevisiae] 126 CSGID 2-113 -25.000 17 IDP92660 hypothetical protein CPE2277 [Clostridium perfringens str. 13] NP_563193 [Clostridium perfringens str. 13]
7 gi|6319254|ref|NP_009337.1| Protein of unknown function; may interact with ribosomes, based on co-purification experiments; (YAL064W) [Saccharomyces cerevisiae] 108 CSGID 49-81 -6.090 26 IDP92577 serine proteinase inhibitor TgPI-2, putative [Toxoplasma gondii ME49] TGME49_008430 [Toxoplasma gondii ME49]
8 gi|33438755|ref|NP_878039.1| Putative protein of unknown function; identified by expression profiling and mass spectrometry; Yal063c-ap (YAL063C-A) [Saccharomyces cerevisiae] 96 CSGID 13-73 -5.510 9 IDP00530 gene: ccmC; putative heme exporter protein C YPO2736 [Yersinia pestis CO92]
9 gi|6319255|ref|NP_009338.1|(removed signalp:1-24) Lectin-like protein with similarity to Flo1p, thought to be expressed and involved in flocculation; Flo9p (YAL063C) [Saccharomyces cerevisiae] 500 CSGID 153-500 -21.400 6 IDP91521 C2 domain-containing protein [Toxoplasma gondii ME49] TGME49_040910 [Toxoplasma gondii ME49]
10 gi|6319255|ref|NP_009338.1|(removed signalp:1-24) Lectin-like protein with similarity to Flo1p, thought to be expressed and involved in flocculation; Flo9p (YAL063C) [Saccharomyces cerevisiae] 500 CSGID 1-500 -31.600 7 IDP91521 C2 domain-containing protein [Toxoplasma gondii ME49] TGME49_040910 [Toxoplasma gondii ME49]
11 gi|6319255|ref|NP_009338.1|(removed signalp:1-24) Lectin-like protein with similarity to Flo1p, thought to be expressed and involved in flocculation; Flo9p (YAL063C) [Saccharomyces cerevisiae] 500 CSGID 1-500 -31.000 8 IDP91521 C2 domain-containing protein [Toxoplasma gondii ME49] TGME49_040910 [Toxoplasma gondii ME49]
12 gi|6319255|ref|NP_009338.1|(removed signalp:1-24) Lectin-like protein with similarity to Flo1p, thought to be expressed and involved in flocculation; Flo9p (YAL063C) [Saccharomyces cerevisiae] 500 CSGID 2-500 -34.200 6 IDP91521 C2 domain-containing protein [Toxoplasma gondii ME49] TGME49_040910 [Toxoplasma gondii ME49]
13 gi|6319255|ref|NP_009338.1|(removed signalp:1-24) Lectin-like protein with similarity to Flo1p, thought to be expressed and involved in flocculation; Flo9p (YAL063C) [Saccharomyces cerevisiae] 298 CSGID 2-288 -25.500 8 IDP91521 C2 domain-containing protein [Toxoplasma gondii ME49] TGME49_040910 [Toxoplasma gondii ME49]
14 gi|6319256|ref|NP_009339.1| NADP(+)-dependent glutamate dehydrogenase, synthesizes glutamate from ammonia and alpha-ketoglutarate; rate of alpha-ketoglutarate utilization differs from Gdh1p; expression regulated by nitrogen and carbon sources; Gdh3p (YAL062W) [Saccharomyces cerevisiae] 457 CSGID 2-456 -110.000 28 IDP02649 putative glutamic dehyrogenase-like protein [Salmonella typhimurium LT2] STM1795 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
15 gi|6319257|ref|NP_009340.1| Putative medium-chain alcohol dehydrogenase with similarity to BDH1; transcription induced by constitutively active PDR1 and PDR3; BDH2 is an essential gene; Bdh2p (YAL061W) [Saccharomyces cerevisiae] 417 CSGID 1-376 -78.800 25 IDP02503 gene: gutB; putative zinc-binding dehydrogenase [Yersinia pestis CO92] YPO2502 [Yersinia pestis CO92]
7-417 -10.300 12 IDP90674 gene: hemA; glutamyl-tRNA reductase [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0542 [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]
16 gi|6319258|ref|NP_009341.1| NAD-dependent (R,R)-butanediol dehydrogenase, catalyzes oxidation of (R,R)-2,3-butanediol to (3R)-acetoin, oxidation of meso-butanediol to (3S)-acetoin, and reduction of acetoin; enhances use of 2,3-butanediol as an aerobic carbon source; Bdh1p (YAL060W) [Saccharomyces cerevisiae] 382 CSGID 1-382 -78.500 23 IDP00931 gene: ybdR; putative dehydrogenase STM0615 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
17 gi|6319259|ref|NP_009342.1| Protein of unknown function, localized in the nucleoplasm and the nucleolus, genetically interacts with MTR2 in 60S ribosomal protein subunit export; Ecm1p (YAL059W) [Saccharomyces cerevisiae] 212 CSGID 1-172 -7.730 11 IDP05117 putative collagen-binding protein [Clostridium difficile 630] CD2831 [Peptoclostridium difficile 630]
18 gi|6319260|ref|NP_009343.1|(removed signalp:1-19) Calnexin; integral membrane ER chaperone involved in folding and quality control of glycoproteins; chaperone activity is inhibited by Mpd1p, with which Cne1p interacts; 24% identical to mammalian calnexin; Ca+ binding not yet shown in yeast; Cne1p (YAL058W) [Saccharomyces cerevisiae] 483 CSGID 1-117 -6.100 12 IDP91976 hypothetical protein HMPREF0837_10616 [Streptococcus pneumoniae TCH8431/19A] HMPREF0837_10616 [Streptococcus pneumoniae TCH8431/19A]
19 gi|41629666|ref|NP_009345.2| Multistep regulator of cAMP-PKA signaling; inhibits PKA downstream of Gpa2p and Cyr1p, thereby increasing cAMP dependency; inhibits Ras activity through direct interactions with Ira1p/2p; regulated by G-alpha protein Gpa2p; homolog of Gpb1p; Gpb2p (YAL056W) [Saccharomyces cerevisiae] 880 CSGID 16-875 -21.400 11 IDP90191 gene: CPXV193 CDS; CPXV193 protein AAM13632.1 [Cowpox virus (Brighton Red)]
283-870 -27.000 12 IDP04233 putative lipoprotein [Clostridium perfringens ATCC 13124] CPF_0722 [Clostridium perfringens ATCC 13124]
20 gi|6319263|ref|NP_009346.1| Putative peroxisomal membrane protein required for import of peroxisomal proteins, functionally complements a Pichia pastoris pex22 mutation; Pex22p (YAL055W) [Saccharomyces cerevisiae] 180 CSGID 36-161 -6.080 10 IDP06515 protein of hypothetical function DUF552 [Enterococcus faecium DO] AFK58423 [Enterococcus faecium DO]

FFAS is supported by the NIH grant R01-GM087218-01

jobs submitted since Jan 1, 2011

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#	Query	Length	Result vs.	Range	Score	%id	Covered by template(s)
1	`gi\|6319249\|ref\|NP_009332.1\|(removed signalp:1-20) hypothetical protein; Pau8p (YAL068C) [Saccharomyces cerevisiae]`	`100`	`CSGID`	`10-100`	`-6.790`	`7`	`IDP92617 hypothetical protein SAUSA300_1868 [Staphylococcus aureus subsp. aureus USA300_FPR3757] SAUSA300_1868 [Staphylococcus aureus subsp. aureus USA300_FPR3757]`
2	`gi\|33438754\|ref\|NP_878038.1\| Putative protein of unknown function; identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching; Yal067w-ap (YAL067W-A) [Saccharomyces cerevisiae]`	`75`	`CSGID`	`11-63`	`-5.030`	`22`	`IDP91344 hypothetical protein VV2_0026 [Vibrio vulnificus CMCP6] VV2_0026 [Vibrio vulnificus CMCP6]`
3	`gi\|6319250\|ref\|NP_009333.1\| Putative permease, member of the allantoate transporter subfamily of the major facilitator superfamily; mutation confers resistance to ethionine sulfoxide; Seo1p (YAL067C) [Saccharomyces cerevisiae]`	`593`	`CSGID`	`133-550`	`-44.600`	`14`	`IDP04335 putative transport protein [Salmonella typhimurium LT2] STM1543_1_428 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]`
4	`gi\|6319252\|ref\|NP_009335.1\| Putative protein of unknown function; has homology to FLO1; possible pseudogene; (YAL065C) [Saccharomyces cerevisiae]`	`128`	`CSGID`	`3-104`	`-6.390`	`9`	`IDP91521 C2 domain-containing protein [Toxoplasma gondii ME49] TGME49_040910 [Toxoplasma gondii ME49]`
5	`gi\|6319253\|ref\|NP_009336.1\| Fungal-specific protein of unknown function; Yal064w-bp (YAL064W-B) [Saccharomyces cerevisiae]`	`126`	`CSGID`	`1-97`	`-6.200`	`20`	`CPX_91710_91752 Complex of NXF1_HUMAN with TIP_SHV2C [Undefined organism]`
6	`gi\|7839146\|ref\|NP_058136.1\| Putative protein of unknown function; YAL064C-A is not an essential gene; Yal064c-ap (YAL064C-A) [Saccharomyces cerevisiae]`	`126`	`CSGID`	`2-113`	`-25.000`	`17`	`IDP92660 hypothetical protein CPE2277 [Clostridium perfringens str. 13] NP_563193 [Clostridium perfringens str. 13]`
7	`gi\|6319254\|ref\|NP_009337.1\| Protein of unknown function; may interact with ribosomes, based on co-purification experiments; (YAL064W) [Saccharomyces cerevisiae]`	`108`	`CSGID`	`49-81`	`-6.090`	`26`	`IDP92577 serine proteinase inhibitor TgPI-2, putative [Toxoplasma gondii ME49] TGME49_008430 [Toxoplasma gondii ME49]`
8	`gi\|33438755\|ref\|NP_878039.1\| Putative protein of unknown function; identified by expression profiling and mass spectrometry; Yal063c-ap (YAL063C-A) [Saccharomyces cerevisiae]`	`96`	`CSGID`	`13-73`	`-5.510`	`9`	`IDP00530 gene: ccmC; putative heme exporter protein C YPO2736 [Yersinia pestis CO92]`
9	`gi\|6319255\|ref\|NP_009338.1\|(removed signalp:1-24) Lectin-like protein with similarity to Flo1p, thought to be expressed and involved in flocculation; Flo9p (YAL063C) [Saccharomyces cerevisiae]`	`500`	`CSGID`	`153-500`	`-21.400`	`6`	`IDP91521 C2 domain-containing protein [Toxoplasma gondii ME49] TGME49_040910 [Toxoplasma gondii ME49]`
10	`gi\|6319255\|ref\|NP_009338.1\|(removed signalp:1-24) Lectin-like protein with similarity to Flo1p, thought to be expressed and involved in flocculation; Flo9p (YAL063C) [Saccharomyces cerevisiae]`	`500`	`CSGID`	`1-500`	`-31.600`	`7`	`IDP91521 C2 domain-containing protein [Toxoplasma gondii ME49] TGME49_040910 [Toxoplasma gondii ME49]`
11	`gi\|6319255\|ref\|NP_009338.1\|(removed signalp:1-24) Lectin-like protein with similarity to Flo1p, thought to be expressed and involved in flocculation; Flo9p (YAL063C) [Saccharomyces cerevisiae]`	`500`	`CSGID`	`1-500`	`-31.000`	`8`	`IDP91521 C2 domain-containing protein [Toxoplasma gondii ME49] TGME49_040910 [Toxoplasma gondii ME49]`
12	`gi\|6319255\|ref\|NP_009338.1\|(removed signalp:1-24) Lectin-like protein with similarity to Flo1p, thought to be expressed and involved in flocculation; Flo9p (YAL063C) [Saccharomyces cerevisiae]`	`500`	`CSGID`	`2-500`	`-34.200`	`6`	`IDP91521 C2 domain-containing protein [Toxoplasma gondii ME49] TGME49_040910 [Toxoplasma gondii ME49]`
13	`gi\|6319255\|ref\|NP_009338.1\|(removed signalp:1-24) Lectin-like protein with similarity to Flo1p, thought to be expressed and involved in flocculation; Flo9p (YAL063C) [Saccharomyces cerevisiae]`	`298`	`CSGID`	`2-288`	`-25.500`	`8`	`IDP91521 C2 domain-containing protein [Toxoplasma gondii ME49] TGME49_040910 [Toxoplasma gondii ME49]`
14	`gi\|6319256\|ref\|NP_009339.1\| NADP(+)-dependent glutamate dehydrogenase, synthesizes glutamate from ammonia and alpha-ketoglutarate; rate of alpha-ketoglutarate utilization differs from Gdh1p; expression regulated by nitrogen and carbon sources; Gdh3p (YAL062W) [Saccharomyces cerevisiae]`	`457`	`CSGID`	`2-456`	`-110.000`	`28`	`IDP02649 putative glutamic dehyrogenase-like protein [Salmonella typhimurium LT2] STM1795 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]`
15	`gi\|6319257\|ref\|NP_009340.1\| Putative medium-chain alcohol dehydrogenase with similarity to BDH1; transcription induced by constitutively active PDR1 and PDR3; BDH2 is an essential gene; Bdh2p (YAL061W) [Saccharomyces cerevisiae]`	`417`	`CSGID`	`1-376`	`-78.800`	`25`	`IDP02503 gene: gutB; putative zinc-binding dehydrogenase [Yersinia pestis CO92] YPO2502 [Yersinia pestis CO92]`
				`7-417`	`-10.300`	`12`	`IDP90674 gene: hemA; glutamyl-tRNA reductase [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0542 [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]`
16	`gi\|6319258\|ref\|NP_009341.1\| NAD-dependent (R,R)-butanediol dehydrogenase, catalyzes oxidation of (R,R)-2,3-butanediol to (3R)-acetoin, oxidation of meso-butanediol to (3S)-acetoin, and reduction of acetoin; enhances use of 2,3-butanediol as an aerobic carbon source; Bdh1p (YAL060W) [Saccharomyces cerevisiae]`	`382`	`CSGID`	`1-382`	`-78.500`	`23`	`IDP00931 gene: ybdR; putative dehydrogenase STM0615 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]`
17	`gi\|6319259\|ref\|NP_009342.1\| Protein of unknown function, localized in the nucleoplasm and the nucleolus, genetically interacts with MTR2 in 60S ribosomal protein subunit export; Ecm1p (YAL059W) [Saccharomyces cerevisiae]`	`212`	`CSGID`	`1-172`	`-7.730`	`11`	`IDP05117 putative collagen-binding protein [Clostridium difficile 630] CD2831 [Peptoclostridium difficile 630]`
18	`gi\|6319260\|ref\|NP_009343.1\|(removed signalp:1-19) Calnexin; integral membrane ER chaperone involved in folding and quality control of glycoproteins; chaperone activity is inhibited by Mpd1p, with which Cne1p interacts; 24% identical to mammalian calnexin; Ca+ binding not yet shown in yeast; Cne1p (YAL058W) [Saccharomyces cerevisiae]`	`483`	`CSGID`	`1-117`	`-6.100`	`12`	`IDP91976 hypothetical protein HMPREF0837_10616 [Streptococcus pneumoniae TCH8431/19A] HMPREF0837_10616 [Streptococcus pneumoniae TCH8431/19A]`
19	`gi\|41629666\|ref\|NP_009345.2\| Multistep regulator of cAMP-PKA signaling; inhibits PKA downstream of Gpa2p and Cyr1p, thereby increasing cAMP dependency; inhibits Ras activity through direct interactions with Ira1p/2p; regulated by G-alpha protein Gpa2p; homolog of Gpb1p; Gpb2p (YAL056W) [Saccharomyces cerevisiae]`	`880`	`CSGID`	`16-875`	`-21.400`	`11`	`IDP90191 gene: CPXV193 CDS; CPXV193 protein AAM13632.1 [Cowpox virus (Brighton Red)]`
				`283-870`	`-27.000`	`12`	`IDP04233 putative lipoprotein [Clostridium perfringens ATCC 13124] CPF_0722 [Clostridium perfringens ATCC 13124]`
20	`gi\|6319263\|ref\|NP_009346.1\| Putative peroxisomal membrane protein required for import of peroxisomal proteins, functionally complements a Pichia pastoris pex22 mutation; Pex22p (YAL055W) [Saccharomyces cerevisiae]`	`180`	`CSGID`	`36-161`	`-6.080`	`10`	`IDP06515 protein of hypothetical function DUF552 [Enterococcus faecium DO] AFK58423 [Enterococcus faecium DO]`