FFAS03 list of results S.cerevisiae / CSGID

Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 21-40 of 8069 < prev page next page >

# Query Length Result vs. Range Score %id Covered by template(s)
21 gi|6319264|ref|NP_009347.1| Acetyl-coA synthetase isoform which, along with Acs2p, is the nuclear source of acetyl-coA for histone acetlyation; expressed during growth on nonfermentable carbon sources and under aerobic conditions; Acs1p (YAL054C) [Saccharomyces cerevisiae] 713 CSGID 54-712 -165.000 46 IDP02156 gene: acs; acetyl-CoA synthetase [Yersinia pestis CO92] YPO0253 [Yersinia pestis CO92]
22 gi|6319265|ref|NP_009348.1|(removed signalp:1-22) Putative FAD transporter; required for uptake of FAD into endoplasmic reticulum; involved in cell wall maintenance; Flc2p (YAL053W) [Saccharomyces cerevisiae] 761 CSGID 20-155 -7.830 12 IDP00930 putative hydrogenase protein STM0612 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
23 gi|50593114|ref|NP_009349.2| Oleate-activated transcription factor, acts alone and as a heterodimer with Pip2p; activates genes involved in beta-oxidation of fatty acids and peroxisome organization and biogenesis; Oaf1p (YAL051W) [Saccharomyces cerevisiae] 500 CSGID 2-448 -8.420 7 IDP91521 C2 domain-containing protein [Toxoplasma gondii ME49] TGME49_040910 [Toxoplasma gondii ME49]
24 gi|50593114|ref|NP_009349.2| Oleate-activated transcription factor, acts alone and as a heterodimer with Pip2p; activates genes involved in beta-oxidation of fatty acids and peroxisome organization and biogenesis; Oaf1p (YAL051W) [Saccharomyces cerevisiae] 500 CSGID 143-283 -5.860 9 IDP05689 putative cellsurface protein [Listeria monocytogenes EGD-e] lmo1654 [Listeria monocytogenes EGD-e]
25 gi|50593114|ref|NP_009349.2| Oleate-activated transcription factor, acts alone and as a heterodimer with Pip2p; activates genes involved in beta-oxidation of fatty acids and peroxisome organization and biogenesis; Oaf1p (YAL051W) [Saccharomyces cerevisiae] 500 CSGID 4-37 -4.900 8 IDP05492 conserved hypothetical protein [Bacillus anthracis str. Ames] BA_3540 [Bacillus anthracis str. Ames]
26 gi|50593114|ref|NP_009349.2| Oleate-activated transcription factor, acts alone and as a heterodimer with Pip2p; activates genes involved in beta-oxidation of fatty acids and peroxisome organization and biogenesis; Oaf1p (YAL051W) [Saccharomyces cerevisiae] 297 CSGID 17-294 -5.940 13 IDP05565 gene: spl; peptidoglycan lytic protein P45 [Listeria monocytogenes EGD-e] lmo2505 [Listeria monocytogenes EGD-e]
27 gi|6319267|ref|NP_009350.1| Cytoplasmic protein of unknown function, potential Hsp82p interactor; null mutant displays decreased frequency of mitochondrial genome loss (petite formation); Aim2p (YAL049C) [Saccharomyces cerevisiae] 246 CSGID 30-246 -23.500 13 IDP01809 carboxylesterase/phospholipase family protein [Francisella tularensis subsp. tularensis SCHU S4] FTT0258 [Francisella tularensis subsp. tularensis SCHU S4]
28 gi|6319268|ref|NP_009351.1| Evolutionarily-conserved tail-anchored outer mitochondrial membrane GTPase which regulates mitochondrial morphology; cells lacking Gem1p contain collapsed, globular, or grape-like mitochondria; not required for pheromone-induced cell death; Gem1p (YAL048C) [Saccharomyces cerevisiae] 662 CSGID 4-188 -37.900 15 IDP92608 Rab 11b, putative [Toxoplasma gondii ME49] TGME49_120480 [Toxoplasma gondii ME49]
7-623 -15.500 14 IDP04530 gene: engA; GTP-binding protein EngA [Salmonella typhimurium LT2] STM2519_1_490 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
29 gi|6319269|ref|NP_009352.1| Component of the cytoplasmic Tub4p (gamma-tubulin) complex, binds spindle pole bodies and links them to microtubules; has roles in astral microtubule formation and stabilization; Spc72p (YAL047C) [Saccharomyces cerevisiae] 622 CSGID 1-614 -13.400 9 IDP91721 gene: MMRN2; multimerin-2 precursor [Homo sapiens] NP_079032 [Homo sapiens]
30 gi|6319270|ref|NP_009353.1| Putative protein of unknown function; null mutant displays increased frequency of mitochondrial genome loss (petite formation); Aim1p (YAL046C) [Saccharomyces cerevisiae] 118 CSGID 38-118 -45.500 30 IDP01322 bolA protein VC2296 [Vibrio cholerae O1 biovar El Tor str. N16961]
31 gi|12621476|ref|NP_075206.1| Putative protein of unknown function; similar to S. pombe uvi31 which is a putative DNA repair protein; Yal044w-ap (YAL044W-A) [Saccharomyces cerevisiae] 110 CSGID 12-110 -56.100 35 IDP01322 bolA protein VC2296 [Vibrio cholerae O1 biovar El Tor str. N16961]
32 gi|37362609|ref|NP_009355.2| H subunit of the mitochondrial glycine decarboxylase complex, required for the catabolism of glycine to 5,10-methylene-THF; expression is regulated by levels of levels of 5,10-methylene-THF in the cytoplasm; Gcv3p (YAL044C) [Saccharomyces cerevisiae] 170 CSGID 39-169 -67.200 38 IDP01980 gene: gcvH; glycine cleavage system protein H [Salmonella typhimurium LT2] STM3054 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
33 gi|6319273|ref|NP_009356.1| Subunit of holo-CPF, a multiprotein complex and functional homolog of mammalian CPSF, required for the cleavage and polyadenylation of mRNA and snoRNA 3' ends; involved in pre-tRNA processing; binds to the phosphorylated CTD of RNAPII; Pta1p (YAL043C) [Saccharomyces cerevisiae] 785 CSGID 301-666 -9.180 10 IDP91521 C2 domain-containing protein [Toxoplasma gondii ME49] TGME49_040910 [Toxoplasma gondii ME49]
34 gi|6319274|ref|NP_009358.1| Protein localized to COPII-coated vesicles, forms a complex with Erv41p; involved in the membrane fusion stage of transport; Erv46p (YAL042W) [Saccharomyces cerevisiae] 415 CSGID 1-375 -6.070 9 IDP91038 hypothetical protein SAHV_2481 [Staphylococcus aureus subsp. aureus Mu3] SAHV_2481 [Staphylococcus aureus subsp. aureus Mu3]
35 gi|6319276|ref|NP_009359.1| Guanine nucleotide exchange factor (GEF or GDP-release factor) for Cdc42p; required for polarity establishment and maintenance, and mutants have morphological defects in bud formation and shmooing; Cdc24p (YAL041W) [Saccharomyces cerevisiae] 854 CSGID 280-779 -8.340 9 IDP91541 3`,5`--cyclic-nucleotide phosphodiesterase, putative [Toxoplasma gondii ME49] TGME49_118680 [Toxoplasma gondii ME49]
36 gi|6319277|ref|NP_009360.1| G1 cyclin involved in cell cycle progression; activates Cdc28p kinase to promote the G1 to S phase transition; plays a role in regulating transcription of the other G1 cyclins, CLN1 and CLN2; regulated by phosphorylation and proteolysis; Cln3p (YAL040C) [Saccharomyces cerevisiae] 580 CSGID 71-205 -7.250 19 IDP95313 VgrG protein [Vibrio cholerae O1 biovar El Tor str. N16961] NP_232524 [Vibrio cholerae O1 biovar El Tor str. N16961]
37 gi|6319278|ref|NP_009361.1| Cytochrome c heme lyase (holocytochrome c synthase), attaches heme to apo-cytochrome c (Cyc1p or Cyc7p) in the mitochondrial intermembrane space; human ortholog may have a role in microphthalmia with linear skin defects (MLS); Cyc3p (YAL039C) [Saccharomyces cerevisiae] 269 CSGID 4-267 -6.790 18 CPX_91722_91684 Complex of ROA1_HUMAN with Q19QW0_CVHSA [Undefined organism]
38 gi|6319279|ref|NP_009362.1| Pyruvate kinase, functions as a homotetramer in glycolysis to convert phosphoenolpyruvate to pyruvate, the input for aerobic (TCA cycle) or anaerobic (glucose fermentation) respiration; Cdc19p (YAL038W) [Saccharomyces cerevisiae] 500 CSGID 18-500 -123.000 42 IDP91824 gene: pykF; pyruvate kinase I [Escherichia coli str. K-12 substr. MG1655] b1676 [Escherichia coli str. K-12 substr. MG1655]
39 gi|33438756|ref|NP_878040.1| Putative protein of unknown function; Yal037c-ap (YAL037C-A) [Saccharomyces cerevisiae] 30 CSGID 1-18 -3.500 16 IDP00531 gene: ccmD; putative heme exporter protein D YPO2737 [Yersinia pestis CO92]
40 gi|6319280|ref|NP_009363.1| Putative protein of unknown function; (YAL037W) [Saccharomyces cerevisiae] 267 CSGID 17-212 -13.600 8 IDP90295 dual-specificity phosphatase laforin, putative [Toxoplasma gondii ME49] TGME49_005290 [Toxoplasma gondii ME49]

FFAS is supported by the NIH grant R01-GM087218-01

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#	Query	Length	Result vs.	Range	Score	%id	Covered by template(s)
21	`gi\|6319264\|ref\|NP_009347.1\| Acetyl-coA synthetase isoform which, along with Acs2p, is the nuclear source of acetyl-coA for histone acetlyation; expressed during growth on nonfermentable carbon sources and under aerobic conditions; Acs1p (YAL054C) [Saccharomyces cerevisiae]`	`713`	`CSGID`	`54-712`	`-165.000`	`46`	`IDP02156 gene: acs; acetyl-CoA synthetase [Yersinia pestis CO92] YPO0253 [Yersinia pestis CO92]`
22	`gi\|6319265\|ref\|NP_009348.1\|(removed signalp:1-22) Putative FAD transporter; required for uptake of FAD into endoplasmic reticulum; involved in cell wall maintenance; Flc2p (YAL053W) [Saccharomyces cerevisiae]`	`761`	`CSGID`	`20-155`	`-7.830`	`12`	`IDP00930 putative hydrogenase protein STM0612 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]`
23	`gi\|50593114\|ref\|NP_009349.2\| Oleate-activated transcription factor, acts alone and as a heterodimer with Pip2p; activates genes involved in beta-oxidation of fatty acids and peroxisome organization and biogenesis; Oaf1p (YAL051W) [Saccharomyces cerevisiae]`	`500`	`CSGID`	`2-448`	`-8.420`	`7`	`IDP91521 C2 domain-containing protein [Toxoplasma gondii ME49] TGME49_040910 [Toxoplasma gondii ME49]`
24	`gi\|50593114\|ref\|NP_009349.2\| Oleate-activated transcription factor, acts alone and as a heterodimer with Pip2p; activates genes involved in beta-oxidation of fatty acids and peroxisome organization and biogenesis; Oaf1p (YAL051W) [Saccharomyces cerevisiae]`	`500`	`CSGID`	`143-283`	`-5.860`	`9`	`IDP05689 putative cellsurface protein [Listeria monocytogenes EGD-e] lmo1654 [Listeria monocytogenes EGD-e]`
25	`gi\|50593114\|ref\|NP_009349.2\| Oleate-activated transcription factor, acts alone and as a heterodimer with Pip2p; activates genes involved in beta-oxidation of fatty acids and peroxisome organization and biogenesis; Oaf1p (YAL051W) [Saccharomyces cerevisiae]`	`500`	`CSGID`	`4-37`	`-4.900`	`8`	`IDP05492 conserved hypothetical protein [Bacillus anthracis str. Ames] BA_3540 [Bacillus anthracis str. Ames]`
26	`gi\|50593114\|ref\|NP_009349.2\| Oleate-activated transcription factor, acts alone and as a heterodimer with Pip2p; activates genes involved in beta-oxidation of fatty acids and peroxisome organization and biogenesis; Oaf1p (YAL051W) [Saccharomyces cerevisiae]`	`297`	`CSGID`	`17-294`	`-5.940`	`13`	`IDP05565 gene: spl; peptidoglycan lytic protein P45 [Listeria monocytogenes EGD-e] lmo2505 [Listeria monocytogenes EGD-e]`
27	`gi\|6319267\|ref\|NP_009350.1\| Cytoplasmic protein of unknown function, potential Hsp82p interactor; null mutant displays decreased frequency of mitochondrial genome loss (petite formation); Aim2p (YAL049C) [Saccharomyces cerevisiae]`	`246`	`CSGID`	`30-246`	`-23.500`	`13`	`IDP01809 carboxylesterase/phospholipase family protein [Francisella tularensis subsp. tularensis SCHU S4] FTT0258 [Francisella tularensis subsp. tularensis SCHU S4]`
28	`gi\|6319268\|ref\|NP_009351.1\| Evolutionarily-conserved tail-anchored outer mitochondrial membrane GTPase which regulates mitochondrial morphology; cells lacking Gem1p contain collapsed, globular, or grape-like mitochondria; not required for pheromone-induced cell death; Gem1p (YAL048C) [Saccharomyces cerevisiae]`	`662`	`CSGID`	`4-188`	`-37.900`	`15`	`IDP92608 Rab 11b, putative [Toxoplasma gondii ME49] TGME49_120480 [Toxoplasma gondii ME49]`
				`7-623`	`-15.500`	`14`	`IDP04530 gene: engA; GTP-binding protein EngA [Salmonella typhimurium LT2] STM2519_1_490 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]`
29	`gi\|6319269\|ref\|NP_009352.1\| Component of the cytoplasmic Tub4p (gamma-tubulin) complex, binds spindle pole bodies and links them to microtubules; has roles in astral microtubule formation and stabilization; Spc72p (YAL047C) [Saccharomyces cerevisiae]`	`622`	`CSGID`	`1-614`	`-13.400`	`9`	`IDP91721 gene: MMRN2; multimerin-2 precursor [Homo sapiens] NP_079032 [Homo sapiens]`
30	`gi\|6319270\|ref\|NP_009353.1\| Putative protein of unknown function; null mutant displays increased frequency of mitochondrial genome loss (petite formation); Aim1p (YAL046C) [Saccharomyces cerevisiae]`	`118`	`CSGID`	`38-118`	`-45.500`	`30`	`IDP01322 bolA protein VC2296 [Vibrio cholerae O1 biovar El Tor str. N16961]`
31	`gi\|12621476\|ref\|NP_075206.1\| Putative protein of unknown function; similar to S. pombe uvi31 which is a putative DNA repair protein; Yal044w-ap (YAL044W-A) [Saccharomyces cerevisiae]`	`110`	`CSGID`	`12-110`	`-56.100`	`35`	`IDP01322 bolA protein VC2296 [Vibrio cholerae O1 biovar El Tor str. N16961]`
32	`gi\|37362609\|ref\|NP_009355.2\| H subunit of the mitochondrial glycine decarboxylase complex, required for the catabolism of glycine to 5,10-methylene-THF; expression is regulated by levels of levels of 5,10-methylene-THF in the cytoplasm; Gcv3p (YAL044C) [Saccharomyces cerevisiae]`	`170`	`CSGID`	`39-169`	`-67.200`	`38`	`IDP01980 gene: gcvH; glycine cleavage system protein H [Salmonella typhimurium LT2] STM3054 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]`
33	`gi\|6319273\|ref\|NP_009356.1\| Subunit of holo-CPF, a multiprotein complex and functional homolog of mammalian CPSF, required for the cleavage and polyadenylation of mRNA and snoRNA 3' ends; involved in pre-tRNA processing; binds to the phosphorylated CTD of RNAPII; Pta1p (YAL043C) [Saccharomyces cerevisiae]`	`785`	`CSGID`	`301-666`	`-9.180`	`10`	`IDP91521 C2 domain-containing protein [Toxoplasma gondii ME49] TGME49_040910 [Toxoplasma gondii ME49]`
34	`gi\|6319274\|ref\|NP_009358.1\| Protein localized to COPII-coated vesicles, forms a complex with Erv41p; involved in the membrane fusion stage of transport; Erv46p (YAL042W) [Saccharomyces cerevisiae]`	`415`	`CSGID`	`1-375`	`-6.070`	`9`	`IDP91038 hypothetical protein SAHV_2481 [Staphylococcus aureus subsp. aureus Mu3] SAHV_2481 [Staphylococcus aureus subsp. aureus Mu3]`
35	`gi\|6319276\|ref\|NP_009359.1\| Guanine nucleotide exchange factor (GEF or GDP-release factor) for Cdc42p; required for polarity establishment and maintenance, and mutants have morphological defects in bud formation and shmooing; Cdc24p (YAL041W) [Saccharomyces cerevisiae]`	`854`	`CSGID`	`280-779`	`-8.340`	`9`	IDP91541 3`,5`--cyclic-nucleotide phosphodiesterase, putative [Toxoplasma gondii ME49] TGME49_118680 [Toxoplasma gondii ME49]
36	`gi\|6319277\|ref\|NP_009360.1\| G1 cyclin involved in cell cycle progression; activates Cdc28p kinase to promote the G1 to S phase transition; plays a role in regulating transcription of the other G1 cyclins, CLN1 and CLN2; regulated by phosphorylation and proteolysis; Cln3p (YAL040C) [Saccharomyces cerevisiae]`	`580`	`CSGID`	`71-205`	`-7.250`	`19`	`IDP95313 VgrG protein [Vibrio cholerae O1 biovar El Tor str. N16961] NP_232524 [Vibrio cholerae O1 biovar El Tor str. N16961]`
37	`gi\|6319278\|ref\|NP_009361.1\| Cytochrome c heme lyase (holocytochrome c synthase), attaches heme to apo-cytochrome c (Cyc1p or Cyc7p) in the mitochondrial intermembrane space; human ortholog may have a role in microphthalmia with linear skin defects (MLS); Cyc3p (YAL039C) [Saccharomyces cerevisiae]`	`269`	`CSGID`	`4-267`	`-6.790`	`18`	`CPX_91722_91684 Complex of ROA1_HUMAN with Q19QW0_CVHSA [Undefined organism]`
38	`gi\|6319279\|ref\|NP_009362.1\| Pyruvate kinase, functions as a homotetramer in glycolysis to convert phosphoenolpyruvate to pyruvate, the input for aerobic (TCA cycle) or anaerobic (glucose fermentation) respiration; Cdc19p (YAL038W) [Saccharomyces cerevisiae]`	`500`	`CSGID`	`18-500`	`-123.000`	`42`	`IDP91824 gene: pykF; pyruvate kinase I [Escherichia coli str. K-12 substr. MG1655] b1676 [Escherichia coli str. K-12 substr. MG1655]`
39	`gi\|33438756\|ref\|NP_878040.1\| Putative protein of unknown function; Yal037c-ap (YAL037C-A) [Saccharomyces cerevisiae]`	`30`	`CSGID`	`1-18`	`-3.500`	`16`	`IDP00531 gene: ccmD; putative heme exporter protein D YPO2737 [Yersinia pestis CO92]`
40	`gi\|6319280\|ref\|NP_009363.1\| Putative protein of unknown function; (YAL037W) [Saccharomyces cerevisiae]`	`267`	`CSGID`	`17-212`	`-13.600`	`8`	`IDP90295 dual-specificity phosphatase laforin, putative [Toxoplasma gondii ME49] TGME49_005290 [Toxoplasma gondii ME49]`