FFAS03 list of results S.cerevisiae / HGM

Shows best template from each database, and all templates with significant scores covering different query fragments

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# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|6319249|ref|NP_009332.1|(removed signalp:1-20) hypothetical protein; Pau8p (YAL068C) [Saccharomyces cerevisiae] 100 HGM_OVER 24-94 -5.840 6 PB025553 _HOMD.0078651_ pint_c_1_4510 Prevotella intermedia 17 [1755134 - 1755736] ORF
2 gi|33438754|ref|NP_878038.1| Putative protein of unknown function; identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching; Yal067w-ap (YAL067W-A) [Saccharomyces cerevisiae] 75 HGM_OVER 3-64 -3.370 8 PB007011 gi|160888195|ref|ZP_02069198.1| hypothetical protein BACUNI_00603 [Bacteroides uniformis ATCC 8492]gi|156862330|gb|EDO55761.1| hypothetical protein BACUNI_00603 [Bacteroides uniformis ATCC 8492]
3 gi|6319250|ref|NP_009333.1| Putative permease, member of the allantoate transporter subfamily of the major facilitator superfamily; mutation confers resistance to ethionine sulfoxide; Seo1p (YAL067C) [Saccharomyces cerevisiae] 593 HGM_OVER 220-356 -6.340 16 HGC00993 gi|163626727|dbj|BABG01009540.1|1.0 TMP01352;
4 gi|6319252|ref|NP_009335.1| Putative protein of unknown function; has homology to FLO1; possible pseudogene; (YAL065C) [Saccharomyces cerevisiae] 128 HGM_OVER 99-127 -3.640 14 HGC00690 gi|162868815|dbj|BABB01001192.1|3.0 TMP00870;
5 gi|6319253|ref|NP_009336.1| Fungal-specific protein of unknown function; Yal064w-bp (YAL064W-B) [Saccharomyces cerevisiae] 126 HGM_OVER 6-125 -4.050 10 PB006205 Q3F123_BACTI/1-181 PB006205; Pfam-B_6205;
6 gi|7839146|ref|NP_058136.1| Putative protein of unknown function; YAL064C-A is not an essential gene; Yal064c-ap (YAL064C-A) [Saccharomyces cerevisiae] 126 HGM_OVER 12-109 -5.920 15 PB011023 A7V2G7_BACUN/1-167 PB011023; Pfam-B_11023;
7 gi|6319254|ref|NP_009337.1| Protein of unknown function; may interact with ribosomes, based on co-purification experiments; (YAL064W) [Saccharomyces cerevisiae] 108 HGM_OVER 15-103 -4.900 15 PB001934 Q6PSL5_CHLRE/821-1150 PB001934; Pfam-B_1934;
8 gi|33438755|ref|NP_878039.1| Putative protein of unknown function; identified by expression profiling and mass spectrometry; Yal063c-ap (YAL063C-A) [Saccharomyces cerevisiae] 96 HGM_OVER 7-83 -5.270 16 PB002776 gi|157737147|ref|YP_001489830.1| hypothetical protein Abu_0901 [Arcobacter butzleri RM4018]gi|157699001|gb|ABV67161.1| hypothetical protein Abu_0901 [Arcobacter butzleri RM4018]
9 gi|6319255|ref|NP_009338.1|(removed signalp:1-24) Lectin-like protein with similarity to Flo1p, thought to be expressed and involved in flocculation; Flo9p (YAL063C) [Saccharomyces cerevisiae] 500 HGM_OVER 4-20 -4.060 23 HGC01215 gi|162843249|dbj|BABA01001460.1|3.0 TMP01713;
10 gi|6319255|ref|NP_009338.1|(removed signalp:1-24) Lectin-like protein with similarity to Flo1p, thought to be expressed and involved in flocculation; Flo9p (YAL063C) [Saccharomyces cerevisiae] 500 HGM_OVER 417-494 -1.010 12 PB069407 _HOMD.0084606_ pint_c_2_12 Prevotella intermedia 17 [3585 - 4295] ORF
11 gi|6319255|ref|NP_009338.1|(removed signalp:1-24) Lectin-like protein with similarity to Flo1p, thought to be expressed and involved in flocculation; Flo9p (YAL063C) [Saccharomyces cerevisiae] 500 HGM_OVER 1-80 -1.530 13 PB069407 _HOMD.0084606_ pint_c_2_12 Prevotella intermedia 17 [3585 - 4295] ORF
12 gi|6319255|ref|NP_009338.1|(removed signalp:1-24) Lectin-like protein with similarity to Flo1p, thought to be expressed and involved in flocculation; Flo9p (YAL063C) [Saccharomyces cerevisiae] 500 HGM_OVER 66-147 -1.800 8 PB069407 _HOMD.0084606_ pint_c_2_12 Prevotella intermedia 17 [3585 - 4295] ORF
13 gi|6319255|ref|NP_009338.1|(removed signalp:1-24) Lectin-like protein with similarity to Flo1p, thought to be expressed and involved in flocculation; Flo9p (YAL063C) [Saccharomyces cerevisiae] 298 HGM_OVER 209-298 -2.830 10 PB069407 _HOMD.0084606_ pint_c_2_12 Prevotella intermedia 17 [3585 - 4295] ORF
14 gi|6319256|ref|NP_009339.1| NADP(+)-dependent glutamate dehydrogenase, synthesizes glutamate from ammonia and alpha-ketoglutarate; rate of alpha-ketoglutarate utilization differs from Gdh1p; expression regulated by nitrogen and carbon sources; Gdh3p (YAL062W) [Saccharomyces cerevisiae] 457 HGM_OVER 310-421 -2.770 10 PB022697 Q5LAY4_BACFN/1-165 PB022697; Pfam-B_22697;
15 gi|6319257|ref|NP_009340.1| Putative medium-chain alcohol dehydrogenase with similarity to BDH1; transcription induced by constitutively active PDR1 and PDR3; BDH2 is an essential gene; Bdh2p (YAL061W) [Saccharomyces cerevisiae] 417 HGM_OVER 12-137 -4.890 13 HGC00991 gi|163600283|dbj|BABF01000984.1|3.0 TMP01348;
16 gi|6319258|ref|NP_009341.1| NAD-dependent (R,R)-butanediol dehydrogenase, catalyzes oxidation of (R,R)-2,3-butanediol to (3R)-acetoin, oxidation of meso-butanediol to (3S)-acetoin, and reduction of acetoin; enhances use of 2,3-butanediol as an aerobic carbon source; Bdh1p (YAL060W) [Saccharomyces cerevisiae] 382 HGM_OVER 12-137 -5.120 9 HGC00991 gi|163600283|dbj|BABF01000984.1|3.0 TMP01348;
17 gi|6319259|ref|NP_009342.1| Protein of unknown function, localized in the nucleoplasm and the nucleolus, genetically interacts with MTR2 in 60S ribosomal protein subunit export; Ecm1p (YAL059W) [Saccharomyces cerevisiae] 212 HGM_OVER 71-135 -4.440 9 PB003142 Q8DVS6_STRMU/1-162 PB003142; Pfam-B_3142;
18 gi|6319260|ref|NP_009343.1|(removed signalp:1-19) Calnexin; integral membrane ER chaperone involved in folding and quality control of glycoproteins; chaperone activity is inhibited by Mpd1p, with which Cne1p interacts; 24% identical to mammalian calnexin; Ca+ binding not yet shown in yeast; Cne1p (YAL058W) [Saccharomyces cerevisiae] 483 HGM_OVER 34-141 -4.140 7 PB042013 A7V626_BACUN/1-162 PB042013; Pfam-B_42013;
19 gi|41629666|ref|NP_009345.2| Multistep regulator of cAMP-PKA signaling; inhibits PKA downstream of Gpa2p and Cyr1p, thereby increasing cAMP dependency; inhibits Ras activity through direct interactions with Ira1p/2p; regulated by G-alpha protein Gpa2p; homolog of Gpb1p; Gpb2p (YAL056W) [Saccharomyces cerevisiae] 880 HGM_OVER 1-191 -3.960 11 HGC00374 gi|162831834|dbj|BABA01012875.1|1.0 TMP00304;
20 gi|6319263|ref|NP_009346.1| Putative peroxisomal membrane protein required for import of peroxisomal proteins, functionally complements a Pichia pastoris pex22 mutation; Pex22p (YAL055W) [Saccharomyces cerevisiae] 180 HGM_OVER 64-167 -4.740 7 PB044822 Q89ZL7_BACTN/1-147 PB044822; Pfam-B_44822;

FFAS is supported by the NIH grant R01-GM087218-01

jobs submitted since Jan 1, 2011

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#	Query	Length	Result vs.	Range	Score	%id	Covered by template(s)
1	`gi\|6319249\|ref\|NP_009332.1\|(removed signalp:1-20) hypothetical protein; Pau8p (YAL068C) [Saccharomyces cerevisiae]`	`100`	`HGM_OVER`	`24-94`	`-5.840`	`6`	`PB025553 _HOMD.0078651_ pint_c_1_4510 Prevotella intermedia 17 [1755134 - 1755736] ORF`
2	`gi\|33438754\|ref\|NP_878038.1\| Putative protein of unknown function; identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching; Yal067w-ap (YAL067W-A) [Saccharomyces cerevisiae]`	`75`	`HGM_OVER`	`3-64`	`-3.370`	`8`	`PB007011 gi\|160888195\|ref\|ZP_02069198.1\| hypothetical protein BACUNI_00603 [Bacteroides uniformis ATCC 8492]gi\|156862330\|gb\|EDO55761.1\| hypothetical protein BACUNI_00603 [Bacteroides uniformis ATCC 8492]`
3	`gi\|6319250\|ref\|NP_009333.1\| Putative permease, member of the allantoate transporter subfamily of the major facilitator superfamily; mutation confers resistance to ethionine sulfoxide; Seo1p (YAL067C) [Saccharomyces cerevisiae]`	`593`	`HGM_OVER`	`220-356`	`-6.340`	`16`	`HGC00993 gi\|163626727\|dbj\|BABG01009540.1\|1.0 TMP01352;`
4	`gi\|6319252\|ref\|NP_009335.1\| Putative protein of unknown function; has homology to FLO1; possible pseudogene; (YAL065C) [Saccharomyces cerevisiae]`	`128`	`HGM_OVER`	`99-127`	`-3.640`	`14`	`HGC00690 gi\|162868815\|dbj\|BABB01001192.1\|3.0 TMP00870;`
5	`gi\|6319253\|ref\|NP_009336.1\| Fungal-specific protein of unknown function; Yal064w-bp (YAL064W-B) [Saccharomyces cerevisiae]`	`126`	`HGM_OVER`	`6-125`	`-4.050`	`10`	`PB006205 Q3F123_BACTI/1-181 PB006205; Pfam-B_6205;`
6	`gi\|7839146\|ref\|NP_058136.1\| Putative protein of unknown function; YAL064C-A is not an essential gene; Yal064c-ap (YAL064C-A) [Saccharomyces cerevisiae]`	`126`	`HGM_OVER`	`12-109`	`-5.920`	`15`	`PB011023 A7V2G7_BACUN/1-167 PB011023; Pfam-B_11023;`
7	`gi\|6319254\|ref\|NP_009337.1\| Protein of unknown function; may interact with ribosomes, based on co-purification experiments; (YAL064W) [Saccharomyces cerevisiae]`	`108`	`HGM_OVER`	`15-103`	`-4.900`	`15`	`PB001934 Q6PSL5_CHLRE/821-1150 PB001934; Pfam-B_1934;`
8	`gi\|33438755\|ref\|NP_878039.1\| Putative protein of unknown function; identified by expression profiling and mass spectrometry; Yal063c-ap (YAL063C-A) [Saccharomyces cerevisiae]`	`96`	`HGM_OVER`	`7-83`	`-5.270`	`16`	`PB002776 gi\|157737147\|ref\|YP_001489830.1\| hypothetical protein Abu_0901 [Arcobacter butzleri RM4018]gi\|157699001\|gb\|ABV67161.1\| hypothetical protein Abu_0901 [Arcobacter butzleri RM4018]`
9	`gi\|6319255\|ref\|NP_009338.1\|(removed signalp:1-24) Lectin-like protein with similarity to Flo1p, thought to be expressed and involved in flocculation; Flo9p (YAL063C) [Saccharomyces cerevisiae]`	`500`	`HGM_OVER`	`4-20`	`-4.060`	`23`	`HGC01215 gi\|162843249\|dbj\|BABA01001460.1\|3.0 TMP01713;`
10	`gi\|6319255\|ref\|NP_009338.1\|(removed signalp:1-24) Lectin-like protein with similarity to Flo1p, thought to be expressed and involved in flocculation; Flo9p (YAL063C) [Saccharomyces cerevisiae]`	`500`	`HGM_OVER`	`417-494`	`-1.010`	`12`	`PB069407 _HOMD.0084606_ pint_c_2_12 Prevotella intermedia 17 [3585 - 4295] ORF`
11	`gi\|6319255\|ref\|NP_009338.1\|(removed signalp:1-24) Lectin-like protein with similarity to Flo1p, thought to be expressed and involved in flocculation; Flo9p (YAL063C) [Saccharomyces cerevisiae]`	`500`	`HGM_OVER`	`1-80`	`-1.530`	`13`	`PB069407 _HOMD.0084606_ pint_c_2_12 Prevotella intermedia 17 [3585 - 4295] ORF`
12	`gi\|6319255\|ref\|NP_009338.1\|(removed signalp:1-24) Lectin-like protein with similarity to Flo1p, thought to be expressed and involved in flocculation; Flo9p (YAL063C) [Saccharomyces cerevisiae]`	`500`	`HGM_OVER`	`66-147`	`-1.800`	`8`	`PB069407 _HOMD.0084606_ pint_c_2_12 Prevotella intermedia 17 [3585 - 4295] ORF`
13	`gi\|6319255\|ref\|NP_009338.1\|(removed signalp:1-24) Lectin-like protein with similarity to Flo1p, thought to be expressed and involved in flocculation; Flo9p (YAL063C) [Saccharomyces cerevisiae]`	`298`	`HGM_OVER`	`209-298`	`-2.830`	`10`	`PB069407 _HOMD.0084606_ pint_c_2_12 Prevotella intermedia 17 [3585 - 4295] ORF`
14	`gi\|6319256\|ref\|NP_009339.1\| NADP(+)-dependent glutamate dehydrogenase, synthesizes glutamate from ammonia and alpha-ketoglutarate; rate of alpha-ketoglutarate utilization differs from Gdh1p; expression regulated by nitrogen and carbon sources; Gdh3p (YAL062W) [Saccharomyces cerevisiae]`	`457`	`HGM_OVER`	`310-421`	`-2.770`	`10`	`PB022697 Q5LAY4_BACFN/1-165 PB022697; Pfam-B_22697;`
15	`gi\|6319257\|ref\|NP_009340.1\| Putative medium-chain alcohol dehydrogenase with similarity to BDH1; transcription induced by constitutively active PDR1 and PDR3; BDH2 is an essential gene; Bdh2p (YAL061W) [Saccharomyces cerevisiae]`	`417`	`HGM_OVER`	`12-137`	`-4.890`	`13`	`HGC00991 gi\|163600283\|dbj\|BABF01000984.1\|3.0 TMP01348;`
16	`gi\|6319258\|ref\|NP_009341.1\| NAD-dependent (R,R)-butanediol dehydrogenase, catalyzes oxidation of (R,R)-2,3-butanediol to (3R)-acetoin, oxidation of meso-butanediol to (3S)-acetoin, and reduction of acetoin; enhances use of 2,3-butanediol as an aerobic carbon source; Bdh1p (YAL060W) [Saccharomyces cerevisiae]`	`382`	`HGM_OVER`	`12-137`	`-5.120`	`9`	`HGC00991 gi\|163600283\|dbj\|BABF01000984.1\|3.0 TMP01348;`
17	`gi\|6319259\|ref\|NP_009342.1\| Protein of unknown function, localized in the nucleoplasm and the nucleolus, genetically interacts with MTR2 in 60S ribosomal protein subunit export; Ecm1p (YAL059W) [Saccharomyces cerevisiae]`	`212`	`HGM_OVER`	`71-135`	`-4.440`	`9`	`PB003142 Q8DVS6_STRMU/1-162 PB003142; Pfam-B_3142;`
18	`gi\|6319260\|ref\|NP_009343.1\|(removed signalp:1-19) Calnexin; integral membrane ER chaperone involved in folding and quality control of glycoproteins; chaperone activity is inhibited by Mpd1p, with which Cne1p interacts; 24% identical to mammalian calnexin; Ca+ binding not yet shown in yeast; Cne1p (YAL058W) [Saccharomyces cerevisiae]`	`483`	`HGM_OVER`	`34-141`	`-4.140`	`7`	`PB042013 A7V626_BACUN/1-162 PB042013; Pfam-B_42013;`
19	`gi\|41629666\|ref\|NP_009345.2\| Multistep regulator of cAMP-PKA signaling; inhibits PKA downstream of Gpa2p and Cyr1p, thereby increasing cAMP dependency; inhibits Ras activity through direct interactions with Ira1p/2p; regulated by G-alpha protein Gpa2p; homolog of Gpb1p; Gpb2p (YAL056W) [Saccharomyces cerevisiae]`	`880`	`HGM_OVER`	`1-191`	`-3.960`	`11`	`HGC00374 gi\|162831834\|dbj\|BABA01012875.1\|1.0 TMP00304;`
20	`gi\|6319263\|ref\|NP_009346.1\| Putative peroxisomal membrane protein required for import of peroxisomal proteins, functionally complements a Pichia pastoris pex22 mutation; Pex22p (YAL055W) [Saccharomyces cerevisiae]`	`180`	`HGM_OVER`	`64-167`	`-4.740`	`7`	`PB044822 Q89ZL7_BACTN/1-147 PB044822; Pfam-B_44822;`