FFAS03 list of results S.cerevisiae / PfamA32U

Shows best template from each database, and all templates with significant scores covering different query fragments

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# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|6319249|ref|NP_009332.1|(removed signalp:1-20) hypothetical protein; Pau8p (YAL068C) [Saccharomyces cerevisiae] 100 PfamA32U 2-95 -43.900 23 PF00660.17; E7KHT3_YEASA/13-116; Seripauperin and TIP1 family
2 gi|33438754|ref|NP_878038.1| Putative protein of unknown function; identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching; Yal067w-ap (YAL067W-A) [Saccharomyces cerevisiae] 75 PfamA32U 22-64 -6.960 32 PF05432.11; D2GX57_AILME/17-317; Bone sialoprotein II (BSP-II)
3 gi|6319250|ref|NP_009333.1| Putative permease, member of the allantoate transporter subfamily of the major facilitator superfamily; mutation confers resistance to ethionine sulfoxide; Seo1p (YAL067C) [Saccharomyces cerevisiae] 593 PfamA32U 96-593 -19.700 9 PF06609.13; Q8NII4_FUSAU/1-598; Fungal trichothecene efflux pump (TRI12)
131-564 -20.800 11 PF00083.24; STP1_ARATH/26-489; Sugar (and other) transporter
146-548 -26.400 9 PF06779.14; Q8Y185_RALSO/36-399; Uncharacterised MFS-type transporter YbfB
4 gi|6319252|ref|NP_009335.1| Putative protein of unknown function; has homology to FLO1; possible pseudogene; (YAL065C) [Saccharomyces cerevisiae] 128 PfamA32U 89-126 -6.990 36 PF07666.11; Q8EWG6_MYCPE/16-144; M penetrans paralogue family 26
5 gi|6319253|ref|NP_009336.1| Fungal-specific protein of unknown function; Yal064w-bp (YAL064W-B) [Saccharomyces cerevisiae] 126 PfamA32U 13-78 -7.580 35 PF17608.2; Q74KI2_LACJO/1-124; Family of unknown function (DUF5504 topsan)
6 gi|7839146|ref|NP_058136.1| Putative protein of unknown function; YAL064C-A is not an essential gene; Yal064c-ap (YAL064C-A) [Saccharomyces cerevisiae] 126 PfamA32U 1-98 -44.300 30 PF10528.9; B4UN21_CANGA/106-200; GLEYA domain
7 gi|6319254|ref|NP_009337.1| Protein of unknown function; may interact with ribosomes, based on co-purification experiments; (YAL064W) [Saccharomyces cerevisiae] 108 PfamA32U 15-82 -6.810 16 PF01822.19; A7ERH4_SCLS1/37-114; WSC domain
8 gi|33438755|ref|NP_878039.1| Putative protein of unknown function; identified by expression profiling and mass spectrometry; Yal063c-ap (YAL063C-A) [Saccharomyces cerevisiae] 96 PfamA32U 31-94 -6.790 25 PF13798.6; X2GN24_9BACI/8-168; Protein of unknown function with PCYCGC motif
9 gi|6319255|ref|NP_009338.1|(removed signalp:1-24) Lectin-like protein with similarity to Flo1p, thought to be expressed and involved in flocculation; Flo9p (YAL063C) [Saccharomyces cerevisiae] 500 PfamA32U 4-216 -9.730 11 PF07691.12; Q7SG54_NEUCR/449-597; PA14 domain
112-213 -24.800 34 PF10528.9; B4UN21_CANGA/106-200; GLEYA domain
242-500 -13.900 4 PF08549.10; E3Q6J3_COLGM/3-717; Fungal domain of unknown function (DUF1750 topsan)
10 gi|6319255|ref|NP_009338.1|(removed signalp:1-24) Lectin-like protein with similarity to Flo1p, thought to be expressed and involved in flocculation; Flo9p (YAL063C) [Saccharomyces cerevisiae] 500 PfamA32U 1-500 -11.800 11 PF06070.11; PP150_HCMVM/1-1048; Herpesvirus large structural phosphoprotein UL32
114-500 -13.300 7 PF17076.5; SBE22_CANGA/1-813; SBE2, cell-wall formation
11 gi|6319255|ref|NP_009338.1|(removed signalp:1-24) Lectin-like protein with similarity to Flo1p, thought to be expressed and involved in flocculation; Flo9p (YAL063C) [Saccharomyces cerevisiae] 500 PfamA32U 1-500 -11.600 12 PF06070.11; PP150_HCMVM/1-1048; Herpesvirus large structural phosphoprotein UL32
61-496 -13.200 12 PF17076.5; SBE22_CANGA/1-813; SBE2, cell-wall formation
12 gi|6319255|ref|NP_009338.1|(removed signalp:1-24) Lectin-like protein with similarity to Flo1p, thought to be expressed and involved in flocculation; Flo9p (YAL063C) [Saccharomyces cerevisiae] 500 PfamA32U 1-453 -13.200 9 PF17076.5; SBE22_CANGA/1-813; SBE2, cell-wall formation
412-500 -12.100 6 PF05466.12; F6R3X8_HORSE/2-233; Brain acid soluble protein 1 (BASP1 protein)
13 gi|6319255|ref|NP_009338.1|(removed signalp:1-24) Lectin-like protein with similarity to Flo1p, thought to be expressed and involved in flocculation; Flo9p (YAL063C) [Saccharomyces cerevisiae] 298 PfamA32U 19-284 -15.600 9 PF17076.5; SBE22_CANGA/1-813; SBE2, cell-wall formation
14 gi|6319256|ref|NP_009339.1| NADP(+)-dependent glutamate dehydrogenase, synthesizes glutamate from ammonia and alpha-ketoglutarate; rate of alpha-ketoglutarate utilization differs from Gdh1p; expression regulated by nitrogen and carbon sources; Gdh3p (YAL062W) [Saccharomyces cerevisiae] 457 PfamA32U 3-454 -22.600 13 PF05088.12; A4XWG7_PSEMY/77-1608; Bacterial NAD-glutamate dehydrogenase
40-168 -73.700 31 PF02812.18; R6WCN3_9CLOT/34-162; Glu/Leu/Phe/Val dehydrogenase, dimerisation domain
185-454 -72.400 32 PF00208.21; DHE3_ORYSJ/176-408; Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
15 gi|6319257|ref|NP_009340.1| Putative medium-chain alcohol dehydrogenase with similarity to BDH1; transcription induced by constitutively active PDR1 and PDR3; BDH2 is an essential gene; Bdh2p (YAL061W) [Saccharomyces cerevisiae] 417 PfamA32U 26-159 -44.900 35 PF08240.12; A9CHB7_AGRFC/24-130; Alcohol dehydrogenase GroES-like domain
144-417 -10.300 11 PF08704.10; Q6DFS3_XENTR/64-300; tRNA methyltransferase complex GCD14 subunit
167-387 -40.800 18 PF16912.5; I7BJ28_NATSJ/144-370; Glucose dehydrogenase C-terminus
16 gi|6319258|ref|NP_009341.1| NAD-dependent (R,R)-butanediol dehydrogenase, catalyzes oxidation of (R,R)-2,3-butanediol to (3R)-acetoin, oxidation of meso-butanediol to (3S)-acetoin, and reduction of acetoin; enhances use of 2,3-butanediol as an aerobic carbon source; Bdh1p (YAL060W) [Saccharomyces cerevisiae] 382 PfamA32U 26-159 -46.200 32 PF08240.12; A9CHB7_AGRFC/24-130; Alcohol dehydrogenase GroES-like domain
167-382 -42.000 19 PF16912.5; I7BJ28_NATSJ/144-370; Glucose dehydrogenase C-terminus
17 gi|6319259|ref|NP_009342.1| Protein of unknown function, localized in the nucleoplasm and the nucleolus, genetically interacts with MTR2 in 60S ribosomal protein subunit export; Ecm1p (YAL059W) [Saccharomyces cerevisiae] 212 PfamA32U 31-152 -61.400 52 PF09135.11; Q6CLT8_KLULA/8-125; Alb1
18 gi|6319260|ref|NP_009343.1|(removed signalp:1-19) Calnexin; integral membrane ER chaperone involved in folding and quality control of glycoproteins; chaperone activity is inhibited by Mpd1p, with which Cne1p interacts; 24% identical to mammalian calnexin; Ca+ binding not yet shown in yeast; Cne1p (YAL058W) [Saccharomyces cerevisiae] 483 PfamA32U 14-394 -125.000 32 PF00262.18; R4XC34_TAPDE/40-408; Calreticulin family
19 gi|41629666|ref|NP_009345.2| Multistep regulator of cAMP-PKA signaling; inhibits PKA downstream of Gpa2p and Cyr1p, thereby increasing cAMP dependency; inhibits Ras activity through direct interactions with Ira1p/2p; regulated by G-alpha protein Gpa2p; homolog of Gpb1p; Gpb2p (YAL056W) [Saccharomyces cerevisiae] 880 PfamA32U 258-851 -34.400 11 PF03089.14; F6YI02_MONDO/51-390; Recombination activating protein 2
20 gi|6319263|ref|NP_009346.1| Putative peroxisomal membrane protein required for import of peroxisomal proteins, functionally complements a Pichia pastoris pex22 mutation; Pex22p (YAL055W) [Saccharomyces cerevisiae] 180 PfamA32U 51-167 -55.300 22 PF12827.7; C4Y073_CLAL4/43-162; Peroxisomal biogenesis protein family

FFAS is supported by the NIH grant R01-GM087218-01

jobs submitted since Jan 1, 2011

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#	Query	Length	Result vs.	Range	Score	%id	Covered by template(s)
1	`gi\|6319249\|ref\|NP_009332.1\|(removed signalp:1-20) hypothetical protein; Pau8p (YAL068C) [Saccharomyces cerevisiae]`	`100`	`PfamA32U`	`2-95`	`-43.900`	`23`	`PF00660.17; E7KHT3_YEASA/13-116; Seripauperin and TIP1 family`
2	`gi\|33438754\|ref\|NP_878038.1\| Putative protein of unknown function; identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching; Yal067w-ap (YAL067W-A) [Saccharomyces cerevisiae]`	`75`	`PfamA32U`	`22-64`	`-6.960`	`32`	`PF05432.11; D2GX57_AILME/17-317; Bone sialoprotein II (BSP-II)`
3	`gi\|6319250\|ref\|NP_009333.1\| Putative permease, member of the allantoate transporter subfamily of the major facilitator superfamily; mutation confers resistance to ethionine sulfoxide; Seo1p (YAL067C) [Saccharomyces cerevisiae]`	`593`	`PfamA32U`	`96-593`	`-19.700`	`9`	`PF06609.13; Q8NII4_FUSAU/1-598; Fungal trichothecene efflux pump (TRI12)`
				`131-564`	`-20.800`	`11`	`PF00083.24; STP1_ARATH/26-489; Sugar (and other) transporter`
				`146-548`	`-26.400`	`9`	`PF06779.14; Q8Y185_RALSO/36-399; Uncharacterised MFS-type transporter YbfB`
4	`gi\|6319252\|ref\|NP_009335.1\| Putative protein of unknown function; has homology to FLO1; possible pseudogene; (YAL065C) [Saccharomyces cerevisiae]`	`128`	`PfamA32U`	`89-126`	`-6.990`	`36`	`PF07666.11; Q8EWG6_MYCPE/16-144; M penetrans paralogue family 26`
5	`gi\|6319253\|ref\|NP_009336.1\| Fungal-specific protein of unknown function; Yal064w-bp (YAL064W-B) [Saccharomyces cerevisiae]`	`126`	`PfamA32U`	`13-78`	`-7.580`	`35`	`PF17608.2; Q74KI2_LACJO/1-124; Family of unknown function (DUF5504 topsan)`
6	`gi\|7839146\|ref\|NP_058136.1\| Putative protein of unknown function; YAL064C-A is not an essential gene; Yal064c-ap (YAL064C-A) [Saccharomyces cerevisiae]`	`126`	`PfamA32U`	`1-98`	`-44.300`	`30`	`PF10528.9; B4UN21_CANGA/106-200; GLEYA domain`
7	`gi\|6319254\|ref\|NP_009337.1\| Protein of unknown function; may interact with ribosomes, based on co-purification experiments; (YAL064W) [Saccharomyces cerevisiae]`	`108`	`PfamA32U`	`15-82`	`-6.810`	`16`	`PF01822.19; A7ERH4_SCLS1/37-114; WSC domain`
8	`gi\|33438755\|ref\|NP_878039.1\| Putative protein of unknown function; identified by expression profiling and mass spectrometry; Yal063c-ap (YAL063C-A) [Saccharomyces cerevisiae]`	`96`	`PfamA32U`	`31-94`	`-6.790`	`25`	`PF13798.6; X2GN24_9BACI/8-168; Protein of unknown function with PCYCGC motif`
9	`gi\|6319255\|ref\|NP_009338.1\|(removed signalp:1-24) Lectin-like protein with similarity to Flo1p, thought to be expressed and involved in flocculation; Flo9p (YAL063C) [Saccharomyces cerevisiae]`	`500`	`PfamA32U`	`4-216`	`-9.730`	`11`	`PF07691.12; Q7SG54_NEUCR/449-597; PA14 domain`
				`112-213`	`-24.800`	`34`	`PF10528.9; B4UN21_CANGA/106-200; GLEYA domain`
				`242-500`	`-13.900`	`4`	`PF08549.10; E3Q6J3_COLGM/3-717; Fungal domain of unknown function (DUF1750 topsan)`
10	`gi\|6319255\|ref\|NP_009338.1\|(removed signalp:1-24) Lectin-like protein with similarity to Flo1p, thought to be expressed and involved in flocculation; Flo9p (YAL063C) [Saccharomyces cerevisiae]`	`500`	`PfamA32U`	`1-500`	`-11.800`	`11`	`PF06070.11; PP150_HCMVM/1-1048; Herpesvirus large structural phosphoprotein UL32`
				`114-500`	`-13.300`	`7`	`PF17076.5; SBE22_CANGA/1-813; SBE2, cell-wall formation`
11	`gi\|6319255\|ref\|NP_009338.1\|(removed signalp:1-24) Lectin-like protein with similarity to Flo1p, thought to be expressed and involved in flocculation; Flo9p (YAL063C) [Saccharomyces cerevisiae]`	`500`	`PfamA32U`	`1-500`	`-11.600`	`12`	`PF06070.11; PP150_HCMVM/1-1048; Herpesvirus large structural phosphoprotein UL32`
				`61-496`	`-13.200`	`12`	`PF17076.5; SBE22_CANGA/1-813; SBE2, cell-wall formation`
12	`gi\|6319255\|ref\|NP_009338.1\|(removed signalp:1-24) Lectin-like protein with similarity to Flo1p, thought to be expressed and involved in flocculation; Flo9p (YAL063C) [Saccharomyces cerevisiae]`	`500`	`PfamA32U`	`1-453`	`-13.200`	`9`	`PF17076.5; SBE22_CANGA/1-813; SBE2, cell-wall formation`
				`412-500`	`-12.100`	`6`	`PF05466.12; F6R3X8_HORSE/2-233; Brain acid soluble protein 1 (BASP1 protein)`
13	`gi\|6319255\|ref\|NP_009338.1\|(removed signalp:1-24) Lectin-like protein with similarity to Flo1p, thought to be expressed and involved in flocculation; Flo9p (YAL063C) [Saccharomyces cerevisiae]`	`298`	`PfamA32U`	`19-284`	`-15.600`	`9`	`PF17076.5; SBE22_CANGA/1-813; SBE2, cell-wall formation`
14	`gi\|6319256\|ref\|NP_009339.1\| NADP(+)-dependent glutamate dehydrogenase, synthesizes glutamate from ammonia and alpha-ketoglutarate; rate of alpha-ketoglutarate utilization differs from Gdh1p; expression regulated by nitrogen and carbon sources; Gdh3p (YAL062W) [Saccharomyces cerevisiae]`	`457`	`PfamA32U`	`3-454`	`-22.600`	`13`	`PF05088.12; A4XWG7_PSEMY/77-1608; Bacterial NAD-glutamate dehydrogenase`
				`40-168`	`-73.700`	`31`	`PF02812.18; R6WCN3_9CLOT/34-162; Glu/Leu/Phe/Val dehydrogenase, dimerisation domain`
				`185-454`	`-72.400`	`32`	`PF00208.21; DHE3_ORYSJ/176-408; Glutamate/Leucine/Phenylalanine/Valine dehydrogenase`
15	`gi\|6319257\|ref\|NP_009340.1\| Putative medium-chain alcohol dehydrogenase with similarity to BDH1; transcription induced by constitutively active PDR1 and PDR3; BDH2 is an essential gene; Bdh2p (YAL061W) [Saccharomyces cerevisiae]`	`417`	`PfamA32U`	`26-159`	`-44.900`	`35`	`PF08240.12; A9CHB7_AGRFC/24-130; Alcohol dehydrogenase GroES-like domain`
				`144-417`	`-10.300`	`11`	`PF08704.10; Q6DFS3_XENTR/64-300; tRNA methyltransferase complex GCD14 subunit`
				`167-387`	`-40.800`	`18`	`PF16912.5; I7BJ28_NATSJ/144-370; Glucose dehydrogenase C-terminus`
16	`gi\|6319258\|ref\|NP_009341.1\| NAD-dependent (R,R)-butanediol dehydrogenase, catalyzes oxidation of (R,R)-2,3-butanediol to (3R)-acetoin, oxidation of meso-butanediol to (3S)-acetoin, and reduction of acetoin; enhances use of 2,3-butanediol as an aerobic carbon source; Bdh1p (YAL060W) [Saccharomyces cerevisiae]`	`382`	`PfamA32U`	`26-159`	`-46.200`	`32`	`PF08240.12; A9CHB7_AGRFC/24-130; Alcohol dehydrogenase GroES-like domain`
				`167-382`	`-42.000`	`19`	`PF16912.5; I7BJ28_NATSJ/144-370; Glucose dehydrogenase C-terminus`
17	`gi\|6319259\|ref\|NP_009342.1\| Protein of unknown function, localized in the nucleoplasm and the nucleolus, genetically interacts with MTR2 in 60S ribosomal protein subunit export; Ecm1p (YAL059W) [Saccharomyces cerevisiae]`	`212`	`PfamA32U`	`31-152`	`-61.400`	`52`	`PF09135.11; Q6CLT8_KLULA/8-125; Alb1`
18	`gi\|6319260\|ref\|NP_009343.1\|(removed signalp:1-19) Calnexin; integral membrane ER chaperone involved in folding and quality control of glycoproteins; chaperone activity is inhibited by Mpd1p, with which Cne1p interacts; 24% identical to mammalian calnexin; Ca+ binding not yet shown in yeast; Cne1p (YAL058W) [Saccharomyces cerevisiae]`	`483`	`PfamA32U`	`14-394`	`-125.000`	`32`	`PF00262.18; R4XC34_TAPDE/40-408; Calreticulin family`
19	`gi\|41629666\|ref\|NP_009345.2\| Multistep regulator of cAMP-PKA signaling; inhibits PKA downstream of Gpa2p and Cyr1p, thereby increasing cAMP dependency; inhibits Ras activity through direct interactions with Ira1p/2p; regulated by G-alpha protein Gpa2p; homolog of Gpb1p; Gpb2p (YAL056W) [Saccharomyces cerevisiae]`	`880`	`PfamA32U`	`258-851`	`-34.400`	`11`	`PF03089.14; F6YI02_MONDO/51-390; Recombination activating protein 2`
20	`gi\|6319263\|ref\|NP_009346.1\| Putative peroxisomal membrane protein required for import of peroxisomal proteins, functionally complements a Pichia pastoris pex22 mutation; Pex22p (YAL055W) [Saccharomyces cerevisiae]`	`180`	`PfamA32U`	`51-167`	`-55.300`	`22`	`PF12827.7; C4Y073_CLAL4/43-162; Peroxisomal biogenesis protein family`