FFAS03 list of results S.cerevisiae / VFDB

Shows best template from each database, and all templates with significant scores covering different query fragments

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# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|6319249|ref|NP_009332.1|(removed signalp:1-20) hypothetical protein; Pau8p (YAL068C) [Saccharomyces cerevisiae] 100 VFDB 22-99 -5.990 15 [S] COG2431 Predicted membrane protein
2 gi|33438754|ref|NP_878038.1| Putative protein of unknown function; identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching; Yal067w-ap (YAL067W-A) [Saccharomyces cerevisiae] 75 VFDB 3-73 -8.050 28 [S] COG4003 Uncharacterized protein conserved in archaea
3 gi|6319250|ref|NP_009333.1| Putative permease, member of the allantoate transporter subfamily of the major facilitator superfamily; mutation confers resistance to ethionine sulfoxide; Seo1p (YAL067C) [Saccharomyces cerevisiae] 593 VFDB 56-586 -98.200 13 [G] KOG2533 Permease of the major facilitator superfamily
4 gi|6319252|ref|NP_009335.1| Putative protein of unknown function; has homology to FLO1; possible pseudogene; (YAL065C) [Saccharomyces cerevisiae] 128 VFDB 79-128 -6.530 22 [T] KOG3797 Peripheral-type benzodiazepine receptor and related proteins
5 gi|6319253|ref|NP_009336.1| Fungal-specific protein of unknown function; Yal064w-bp (YAL064W-B) [Saccharomyces cerevisiae] 126 VFDB 32-126 -7.770 16 [C] KOG4769 Cytochrome c oxidase, subunit I
6 gi|7839146|ref|NP_058136.1| Putative protein of unknown function; YAL064C-A is not an essential gene; Yal064c-ap (YAL064C-A) [Saccharomyces cerevisiae] 126 VFDB 9-116 -8.760 12 [S] COG4402 Uncharacterized protein conserved in bacteria
7 gi|6319254|ref|NP_009337.1| Protein of unknown function; may interact with ribosomes, based on co-purification experiments; (YAL064W) [Saccharomyces cerevisiae] 108 VFDB 18-95 -5.570 21 [S] KOG4487 Uncharacterized conserved protein
8 gi|33438755|ref|NP_878039.1| Putative protein of unknown function; identified by expression profiling and mass spectrometry; Yal063c-ap (YAL063C-A) [Saccharomyces cerevisiae] 96 VFDB 4-90 -6.220 11 [K] KOG3152 TBP-binding protein, activator of basal transcription (contains rrm motif)
9 gi|6319255|ref|NP_009338.1|(removed signalp:1-24) Lectin-like protein with similarity to Flo1p, thought to be expressed and involved in flocculation; Flo9p (YAL063C) [Saccharomyces cerevisiae] 500 VFDB 146-499 -20.300 10 [TU] KOG3895 Synaptic vesicle protein Synapsin
228-499 -21.400 6 [R] KOG2350 Zn-finger protein joined to JAZF1 (predicted suppressor)
10 gi|6319255|ref|NP_009338.1|(removed signalp:1-24) Lectin-like protein with similarity to Flo1p, thought to be expressed and involved in flocculation; Flo9p (YAL063C) [Saccharomyces cerevisiae] 500 VFDB 1-485 -23.100 8 [TU] KOG3895 Synaptic vesicle protein Synapsin
11 gi|6319255|ref|NP_009338.1|(removed signalp:1-24) Lectin-like protein with similarity to Flo1p, thought to be expressed and involved in flocculation; Flo9p (YAL063C) [Saccharomyces cerevisiae] 500 VFDB 1-462 -23.700 9 [TU] KOG3895 Synaptic vesicle protein Synapsin
212-500 -21.200 6 [R] KOG2350 Zn-finger protein joined to JAZF1 (predicted suppressor)
12 gi|6319255|ref|NP_009338.1|(removed signalp:1-24) Lectin-like protein with similarity to Flo1p, thought to be expressed and involved in flocculation; Flo9p (YAL063C) [Saccharomyces cerevisiae] 500 VFDB 1-500 -24.300 10 [TU] KOG3895 Synaptic vesicle protein Synapsin
13 gi|6319255|ref|NP_009338.1|(removed signalp:1-24) Lectin-like protein with similarity to Flo1p, thought to be expressed and involved in flocculation; Flo9p (YAL063C) [Saccharomyces cerevisiae] 298 VFDB 2-284 -25.600 7 [R] KOG2350 Zn-finger protein joined to JAZF1 (predicted suppressor)
14 gi|6319256|ref|NP_009339.1| NADP(+)-dependent glutamate dehydrogenase, synthesizes glutamate from ammonia and alpha-ketoglutarate; rate of alpha-ketoglutarate utilization differs from Gdh1p; expression regulated by nitrogen and carbon sources; Gdh3p (YAL062W) [Saccharomyces cerevisiae] 457 VFDB 1-455 -109.000 27 [E] COG0334 Glutamate dehydrogenase/leucine dehydrogenase
15 gi|6319257|ref|NP_009340.1| Putative medium-chain alcohol dehydrogenase with similarity to BDH1; transcription induced by constitutively active PDR1 and PDR3; BDH2 is an essential gene; Bdh2p (YAL061W) [Saccharomyces cerevisiae] 417 VFDB 1-382 -85.600 29 [Q] KOG0024 Sorbitol dehydrogenase
89-417 -10.700 12 [J] KOG2915 tRNA(1-methyladenosine) methyltransferase, subunit GCD14
16 gi|6319258|ref|NP_009341.1| NAD-dependent (R,R)-butanediol dehydrogenase, catalyzes oxidation of (R,R)-2,3-butanediol to (3R)-acetoin, oxidation of meso-butanediol to (3S)-acetoin, and reduction of acetoin; enhances use of 2,3-butanediol as an aerobic carbon source; Bdh1p (YAL060W) [Saccharomyces cerevisiae] 382 VFDB 1-381 -86.000 25 [Q] KOG0024 Sorbitol dehydrogenase
17 gi|6319259|ref|NP_009342.1| Protein of unknown function, localized in the nucleoplasm and the nucleolus, genetically interacts with MTR2 in 60S ribosomal protein subunit export; Ecm1p (YAL059W) [Saccharomyces cerevisiae] 212 VFDB 3-64 -7.050 14 [S] KOG2890 Predicted membrane protein
18 gi|6319260|ref|NP_009343.1|(removed signalp:1-19) Calnexin; integral membrane ER chaperone involved in folding and quality control of glycoproteins; chaperone activity is inhibited by Mpd1p, with which Cne1p interacts; 24% identical to mammalian calnexin; Ca+ binding not yet shown in yeast; Cne1p (YAL058W) [Saccharomyces cerevisiae] 483 VFDB 1-435 -113.000 29 [O] KOG0675 Calnexin
19 gi|41629666|ref|NP_009345.2| Multistep regulator of cAMP-PKA signaling; inhibits PKA downstream of Gpa2p and Cyr1p, thereby increasing cAMP dependency; inhibits Ras activity through direct interactions with Ira1p/2p; regulated by G-alpha protein Gpa2p; homolog of Gpb1p; Gpb2p (YAL056W) [Saccharomyces cerevisiae] 880 VFDB 4-864 -23.700 9 [TR] KOG4441 Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes
173-866 -43.100 10 [T] KOG2437 Muskelin
265-866 -46.800 13 [R] KOG1230 Protein containing repeated kelch motifs
20 gi|6319263|ref|NP_009346.1| Putative peroxisomal membrane protein required for import of peroxisomal proteins, functionally complements a Pichia pastoris pex22 mutation; Pex22p (YAL055W) [Saccharomyces cerevisiae] 180 VFDB 4-143 -6.650 8 [S] COG5353 Uncharacterized protein conserved in bacteria

FFAS is supported by the NIH grant R01-GM087218-01

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#	Query	Length	Result vs.	Range	Score	%id	Covered by template(s)
1	`gi\|6319249\|ref\|NP_009332.1\|(removed signalp:1-20) hypothetical protein; Pau8p (YAL068C) [Saccharomyces cerevisiae]`	`100`	`VFDB`	`22-99`	`-5.990`	`15`	`[S] COG2431 Predicted membrane protein`
2	`gi\|33438754\|ref\|NP_878038.1\| Putative protein of unknown function; identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching; Yal067w-ap (YAL067W-A) [Saccharomyces cerevisiae]`	`75`	`VFDB`	`3-73`	`-8.050`	`28`	`[S] COG4003 Uncharacterized protein conserved in archaea`
3	`gi\|6319250\|ref\|NP_009333.1\| Putative permease, member of the allantoate transporter subfamily of the major facilitator superfamily; mutation confers resistance to ethionine sulfoxide; Seo1p (YAL067C) [Saccharomyces cerevisiae]`	`593`	`VFDB`	`56-586`	`-98.200`	`13`	`[G] KOG2533 Permease of the major facilitator superfamily`
4	`gi\|6319252\|ref\|NP_009335.1\| Putative protein of unknown function; has homology to FLO1; possible pseudogene; (YAL065C) [Saccharomyces cerevisiae]`	`128`	`VFDB`	`79-128`	`-6.530`	`22`	`[T] KOG3797 Peripheral-type benzodiazepine receptor and related proteins`
5	`gi\|6319253\|ref\|NP_009336.1\| Fungal-specific protein of unknown function; Yal064w-bp (YAL064W-B) [Saccharomyces cerevisiae]`	`126`	`VFDB`	`32-126`	`-7.770`	`16`	`[C] KOG4769 Cytochrome c oxidase, subunit I`
6	`gi\|7839146\|ref\|NP_058136.1\| Putative protein of unknown function; YAL064C-A is not an essential gene; Yal064c-ap (YAL064C-A) [Saccharomyces cerevisiae]`	`126`	`VFDB`	`9-116`	`-8.760`	`12`	`[S] COG4402 Uncharacterized protein conserved in bacteria`
7	`gi\|6319254\|ref\|NP_009337.1\| Protein of unknown function; may interact with ribosomes, based on co-purification experiments; (YAL064W) [Saccharomyces cerevisiae]`	`108`	`VFDB`	`18-95`	`-5.570`	`21`	`[S] KOG4487 Uncharacterized conserved protein`
8	`gi\|33438755\|ref\|NP_878039.1\| Putative protein of unknown function; identified by expression profiling and mass spectrometry; Yal063c-ap (YAL063C-A) [Saccharomyces cerevisiae]`	`96`	`VFDB`	`4-90`	`-6.220`	`11`	`[K] KOG3152 TBP-binding protein, activator of basal transcription (contains rrm motif)`
9	`gi\|6319255\|ref\|NP_009338.1\|(removed signalp:1-24) Lectin-like protein with similarity to Flo1p, thought to be expressed and involved in flocculation; Flo9p (YAL063C) [Saccharomyces cerevisiae]`	`500`	`VFDB`	`146-499`	`-20.300`	`10`	`[TU] KOG3895 Synaptic vesicle protein Synapsin`
				`228-499`	`-21.400`	`6`	`[R] KOG2350 Zn-finger protein joined to JAZF1 (predicted suppressor)`
10	`gi\|6319255\|ref\|NP_009338.1\|(removed signalp:1-24) Lectin-like protein with similarity to Flo1p, thought to be expressed and involved in flocculation; Flo9p (YAL063C) [Saccharomyces cerevisiae]`	`500`	`VFDB`	`1-485`	`-23.100`	`8`	`[TU] KOG3895 Synaptic vesicle protein Synapsin`
11	`gi\|6319255\|ref\|NP_009338.1\|(removed signalp:1-24) Lectin-like protein with similarity to Flo1p, thought to be expressed and involved in flocculation; Flo9p (YAL063C) [Saccharomyces cerevisiae]`	`500`	`VFDB`	`1-462`	`-23.700`	`9`	`[TU] KOG3895 Synaptic vesicle protein Synapsin`
				`212-500`	`-21.200`	`6`	`[R] KOG2350 Zn-finger protein joined to JAZF1 (predicted suppressor)`
12	`gi\|6319255\|ref\|NP_009338.1\|(removed signalp:1-24) Lectin-like protein with similarity to Flo1p, thought to be expressed and involved in flocculation; Flo9p (YAL063C) [Saccharomyces cerevisiae]`	`500`	`VFDB`	`1-500`	`-24.300`	`10`	`[TU] KOG3895 Synaptic vesicle protein Synapsin`
13	`gi\|6319255\|ref\|NP_009338.1\|(removed signalp:1-24) Lectin-like protein with similarity to Flo1p, thought to be expressed and involved in flocculation; Flo9p (YAL063C) [Saccharomyces cerevisiae]`	`298`	`VFDB`	`2-284`	`-25.600`	`7`	`[R] KOG2350 Zn-finger protein joined to JAZF1 (predicted suppressor)`
14	`gi\|6319256\|ref\|NP_009339.1\| NADP(+)-dependent glutamate dehydrogenase, synthesizes glutamate from ammonia and alpha-ketoglutarate; rate of alpha-ketoglutarate utilization differs from Gdh1p; expression regulated by nitrogen and carbon sources; Gdh3p (YAL062W) [Saccharomyces cerevisiae]`	`457`	`VFDB`	`1-455`	`-109.000`	`27`	`[E] COG0334 Glutamate dehydrogenase/leucine dehydrogenase`
15	`gi\|6319257\|ref\|NP_009340.1\| Putative medium-chain alcohol dehydrogenase with similarity to BDH1; transcription induced by constitutively active PDR1 and PDR3; BDH2 is an essential gene; Bdh2p (YAL061W) [Saccharomyces cerevisiae]`	`417`	`VFDB`	`1-382`	`-85.600`	`29`	`[Q] KOG0024 Sorbitol dehydrogenase`
				`89-417`	`-10.700`	`12`	`[J] KOG2915 tRNA(1-methyladenosine) methyltransferase, subunit GCD14`
16	`gi\|6319258\|ref\|NP_009341.1\| NAD-dependent (R,R)-butanediol dehydrogenase, catalyzes oxidation of (R,R)-2,3-butanediol to (3R)-acetoin, oxidation of meso-butanediol to (3S)-acetoin, and reduction of acetoin; enhances use of 2,3-butanediol as an aerobic carbon source; Bdh1p (YAL060W) [Saccharomyces cerevisiae]`	`382`	`VFDB`	`1-381`	`-86.000`	`25`	`[Q] KOG0024 Sorbitol dehydrogenase`
17	`gi\|6319259\|ref\|NP_009342.1\| Protein of unknown function, localized in the nucleoplasm and the nucleolus, genetically interacts with MTR2 in 60S ribosomal protein subunit export; Ecm1p (YAL059W) [Saccharomyces cerevisiae]`	`212`	`VFDB`	`3-64`	`-7.050`	`14`	`[S] KOG2890 Predicted membrane protein`
18	`gi\|6319260\|ref\|NP_009343.1\|(removed signalp:1-19) Calnexin; integral membrane ER chaperone involved in folding and quality control of glycoproteins; chaperone activity is inhibited by Mpd1p, with which Cne1p interacts; 24% identical to mammalian calnexin; Ca+ binding not yet shown in yeast; Cne1p (YAL058W) [Saccharomyces cerevisiae]`	`483`	`VFDB`	`1-435`	`-113.000`	`29`	`[O] KOG0675 Calnexin`
19	`gi\|41629666\|ref\|NP_009345.2\| Multistep regulator of cAMP-PKA signaling; inhibits PKA downstream of Gpa2p and Cyr1p, thereby increasing cAMP dependency; inhibits Ras activity through direct interactions with Ira1p/2p; regulated by G-alpha protein Gpa2p; homolog of Gpb1p; Gpb2p (YAL056W) [Saccharomyces cerevisiae]`	`880`	`VFDB`	`4-864`	`-23.700`	`9`	`[TR] KOG4441 Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes`
				`173-866`	`-43.100`	`10`	`[T] KOG2437 Muskelin`
				`265-866`	`-46.800`	`13`	`[R] KOG1230 Protein containing repeated kelch motifs`
20	`gi\|6319263\|ref\|NP_009346.1\| Putative peroxisomal membrane protein required for import of peroxisomal proteins, functionally complements a Pichia pastoris pex22 mutation; Pex22p (YAL055W) [Saccharomyces cerevisiae]`	`180`	`VFDB`	`4-143`	`-6.650`	`8`	`[S] COG5353 Uncharacterized protein conserved in bacteria`