current user: public

If you have questions about the server, please let us know.

Filter & download results: Zscore <   Identity ≥(%)   Query residues aligned ≥(%)   Max number of homologs:   Template Database:

Page size:   Sort by score   Show only entries containing string:

Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 21-40 of 4946< prev pagenext page >

# Query Length Result vs. Range Score %id Covered by template(s)
21 gi|16759014|ref|NP_454631.1| hypothetical protein (STY0021) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 234 COG1018 5-228 -34.300 10  [T] COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases
22 gi|16759015|ref|NP_454632.1|(removed signalp:1-24) fimbrial subunit (STY0024) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 156 COG1018 2-155 -11.000 14  [S] COG5430 Uncharacterized secreted protein
9-129 -22.800 16  [NU] COG3539 P pilus assembly protein, pilin FimA
23 gi|16759016|ref|NP_454633.1|(removed signalp:1-26) fimbrial chaperone (STY0025) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 202 COG1018 1-202 -84.100 29  [NU] COG3121 P pilus assembly protein, chaperone PapD
24 gi|16759017|ref|NP_454634.1|(removed signalp:1-21) fimbrial subunit (STY0029) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 314 COG1018 1-282 -53.400 25  [NU] COG3539 P pilus assembly protein, pilin FimA
2-313 -19.000 11  [S] COG5430 Uncharacterized secreted protein
25 gi|16759018|ref|NP_454635.1|(removed signalp:1-23) fimbrial subunit (STY0030) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 158 COG1018 1-157 -10.800 12  [S] COG5430 Uncharacterized secreted protein
6-128 -22.300 18  [NU] COG3539 P pilus assembly protein, pilin FimA
26 gi|16759019|ref|NP_454636.1|(removed signalp:1-20) fimbrial subunit (STY0031) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 152 COG1018 4-122 -23.000 21  [NU] COG3539 P pilus assembly protein, pilin FimA
27 gi|16759020|ref|NP_454637.1|(removed signalp:1-22) fimbrial chaperone (STY0032) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 212 COG1018 1-206 -85.300 20  [NU] COG3121 P pilus assembly protein, chaperone PapD
28 gi|16759021|ref|NP_454638.1|(removed signalp:1-27) hypothetical protein (STY0033) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 254 COG1018 1-253 -26.900 17  [O] COG1651 Protein-disulfide isomerase
29 gi|16759022|ref|NP_454639.1| hypothetical protein (STY0034) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 95 COG1018 1-86 -8.430 [J] COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog)
30 gi|16759023|ref|NP_454640.1| hypothetical protein (STY0035) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 149 COG1018 2-135 -41.100 17  [K] COG3710 DNA-binding winged-HTH domains
31 gi|16759024|ref|NP_454641.1| LysR family transcriptional regulator (STY0036) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 331 COG1018 7-313 -31.100 15  [K] COG0583 Transcriptional regulator
32 gi|16759025|ref|NP_454642.1| putative transcriptional regulator (STY0038) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 101 COG1018 2-101 -32.200 22  [K] COG3710 DNA-binding winged-HTH domains
33 gi|16759026|ref|NP_454643.1| sulfatase (STY0039) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 572 COG1018 53-468 -9.620 [G] COG4993 Glucose dehydrogenase
110-422 -9.750 [S] COG3490 Uncharacterized protein conserved in bacteria
144-504 -10.800 [Q] KOG4649 PQQ (pyrrolo-quinoline quinone) repeat protein
34 gi|16759027|ref|NP_454644.1|(removed signalp:1-29) putative secreted 5'-nucleotidase (STY0040) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 494 COG1018 2-493 -91.600 19  [F] COG0737 5`-nucleotidase/2`,3`-cyclic phosphodiesterase and related esterases
35 gi|16759028|ref|NP_454645.1|(removed signalp:1-24) hypothetical protein (STY0041) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 229 COG1018 1-229 -54.100 [M] COG3248 Nucleoside-binding outer membrane protein
36 gi|16759029|ref|NP_454646.1|(removed signalp:1-25) putative secreted sulfatase (STY0042) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 472 COG1018 1-466 -109.000 28  [R] KOG3867 Sulfatase
37 gi|16759030|ref|NP_454647.1| sulfatase regulatory protein (STY0043) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 396 COG1018 7-395 -119.000 44  [R] COG0641 Arylsulfatase regulator (Fe-S oxidoreductase)
38 gi|16759031|ref|NP_454648.1| hypothetical protein (STY0045) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 327 COG1018 2-74 -16.900 [L] COG3677 Transposase and inactivated derivatives
39 gi|16759032|ref|NP_454649.1| sulfatase (STY0046) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 571 COG1018 53-506 -10.500 [G] COG4993 Glucose dehydrogenase
165-511 -11.400 [Q] KOG4649 PQQ (pyrrolo-quinoline quinone) repeat protein
40 gi|16759033|ref|NP_454650.1| pH-dependent sodium/proton antiporter (STY0047) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 388 COG1018 1-387 -121.000 92  [P] COG3004 Na+/H+ antiporter


FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 6 2 8   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Tkacz A, Godzik A., Rychlewski L. A support vector machine approach to the identification of phosphorylation sites. Cell Mol Biol Lett. 2005;10(1):73-89.