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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 21-40 of 4946< prev pagenext page >

# Query Length Result vs. Range Score %id Covered by template(s)
21 gi|16759014|ref|NP_454631.1| hypothetical protein (STY0021) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 234 CSGID 1-151 -12.600 IDP91361 NhaP-type Na+/H+ and K+/H+ antiporters [Vibrio vulnificus CMCP6] VV1_2840 [Vibrio vulnificus CMCP6]
34-229 -48.800 16  IDP91810 gene: crp; DNA-binding transcriptional dual regulator [Escherichia coli str. K-12 substr. MG1655] b3357 [Escherichia coli str. K-12 substr. MG1655]
22 gi|16759015|ref|NP_454632.1|(removed signalp:1-24) fimbrial subunit (STY0024) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 156 CSGID 2-156 -57.100 23  IDP95105 fimbriae stability-associated protein [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] YP_002921124 [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]
23 gi|16759016|ref|NP_454633.1|(removed signalp:1-26) fimbrial chaperone (STY0025) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 202 CSGID 1-201 -91.200 41  IDP93873 putative fimbrial chaperone protein [Yersinia enterocolitica subsp. enterocolitica WA-314] EKA26882 [Yersinia enterocolitica subsp. enterocolitica WA-314]
24 gi|16759017|ref|NP_454634.1|(removed signalp:1-21) fimbrial subunit (STY0029) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 314 CSGID 2-314 -55.800 12  IDP95141 fimbrial adhesin protein precursor [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] YP_002921125 [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]
25 gi|16759018|ref|NP_454635.1|(removed signalp:1-23) fimbrial subunit (STY0030) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 158 CSGID 2-158 -59.100 20  IDP93898 fimbrial protein [Yersinia enterocolitica subsp. enterocolitica 8081] YP_001005443 [Yersinia enterocolitica subsp. enterocolitica 8081]
26 gi|16759019|ref|NP_454636.1|(removed signalp:1-20) fimbrial subunit (STY0031) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 152 CSGID 2-152 -59.000 23  IDP93898 fimbrial protein [Yersinia enterocolitica subsp. enterocolitica 8081] YP_001005443 [Yersinia enterocolitica subsp. enterocolitica 8081]
27 gi|16759020|ref|NP_454637.1|(removed signalp:1-22) fimbrial chaperone (STY0032) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 212 CSGID 1-208 -92.000 37  IDP93873 putative fimbrial chaperone protein [Yersinia enterocolitica subsp. enterocolitica WA-314] EKA26882 [Yersinia enterocolitica subsp. enterocolitica WA-314]
28 gi|16759021|ref|NP_454638.1|(removed signalp:1-27) hypothetical protein (STY0033) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 254 CSGID 1-254 -87.100 29  IDP91528 gene: com1; 27 kDa outer membrane protein [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] lpg1841 [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
29 gi|16759022|ref|NP_454639.1| hypothetical protein (STY0034) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 95 CSGID 1-95 -22.400 13  IDP93898 fimbrial protein [Yersinia enterocolitica subsp. enterocolitica 8081] YP_001005443 [Yersinia enterocolitica subsp. enterocolitica 8081]
30 gi|16759023|ref|NP_454640.1| hypothetical protein (STY0035) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 149 CSGID 1-144 -57.500 39  IDP01845 hypothetical protein STM0017 [Salmonella typhimurium LT2] STM0017 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
31 gi|16759024|ref|NP_454641.1| LysR family transcriptional regulator (STY0036) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 331 CSGID 10-330 -43.600 15  IDP00586 gene: metR; lysR-family transcriptional regulatory protein YPO3789 [Yersinia pestis CO92]
32 gi|16759025|ref|NP_454642.1| putative transcriptional regulator (STY0038) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 101 CSGID 1-101 -46.700 45  IDP01845 hypothetical protein STM0017 [Salmonella typhimurium LT2] STM0017 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
33 gi|16759026|ref|NP_454643.1| sulfatase (STY0039) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 572 CSGID 1-170 -27.600 12  IDP05757 hypothetical protein lmo0881 [Listeria monocytogenes EGD-e] lmo0881 [Listeria monocytogenes EGD-e]
64-502 -9.550 IDP01398 outer membrane protein assembly complex subunit YfgL VC0762 [Vibrio cholerae O1 biovar El Tor str. N16961]
34 gi|16759027|ref|NP_454644.1|(removed signalp:1-29) putative secreted 5'-nucleotidase (STY0040) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 494 CSGID 2-493 -113.000 24  IDP05043 putative 5`-nucleotidase [Bacillus anthracis str. Ames] BA_3162 [Bacillus anthracis str. Ames]
35 gi|16759028|ref|NP_454645.1|(removed signalp:1-24) hypothetical protein (STY0041) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 229 CSGID 1-229 -56.300 10  IDP01451 outer membrane protein OmpK VC2305 [Vibrio cholerae O1 biovar El Tor str. N16961]
36 gi|16759029|ref|NP_454646.1|(removed signalp:1-25) putative secreted sulfatase (STY0042) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 472 CSGID 1-468 -122.000 21  IDP02230 putative sulfatase [Yersinia pestis CO92] YPO0829 [Yersinia pestis CO92]
37 gi|16759030|ref|NP_454647.1| sulfatase regulatory protein (STY0043) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 396 CSGID 2-390 -111.000 44  IDP91336 arylsulfatase regulator [Vibrio vulnificus CMCP6] VV2_0152 [Vibrio vulnificus CMCP6]
38 gi|16759031|ref|NP_454648.1| hypothetical protein (STY0045) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 327 CSGID 18-232 -6.960 10  IDP95184 gene: lmo0178; lmo0178 [Listeria monocytogenes EGD-e] CAC98393 [Listeria monocytogenes EGD-e]
39 gi|16759032|ref|NP_454649.1| sulfatase (STY0046) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 571 CSGID 18-170 -28.900 10  IDP05757 hypothetical protein lmo0881 [Listeria monocytogenes EGD-e] lmo0881 [Listeria monocytogenes EGD-e]
60-506 -9.610 10  IDP01398 outer membrane protein assembly complex subunit YfgL VC0762 [Vibrio cholerae O1 biovar El Tor str. N16961]
40 gi|16759033|ref|NP_454650.1| pH-dependent sodium/proton antiporter (STY0047) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 388 CSGID 16-382 -7.260 12  IDP91361 NhaP-type Na+/H+ and K+/H+ antiporters [Vibrio vulnificus CMCP6] VV1_2840 [Vibrio vulnificus CMCP6]


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Tkacz A, Godzik A., Rychlewski L. A support vector machine approach to the identification of phosphorylation sites. Cell Mol Biol Lett. 2005;10(1):73-89.