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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 4946next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|16758994|ref|NP_454611.1| thr operon leader peptide (STY0001) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 21 SCOP207 1-21 -2.040 19  d2f9ia1 c.14.1.0 (A:1-314) automated matches {Staphylococcus aureus [TaxId: 1280]}
2 gi|16758995|ref|NP_454612.1| bifunctional aspartokinase I/homeserine dehydrogenase I (STY0002) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 820 SCOP207 2-300 -92.600 34  d3c20a1 c.73.1.3 (A:2-303) automated matches {Methanocaldococcus jannaschii [TaxId: 2190]}
303-395 -19.000 22  d2cdqa2 d.58.18.10 (A:329-419) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
396-462 -25.100 43  d3c20a3 d.58.18.0 (A:404-470) automated matches {Methanocaldococcus jannaschii [TaxId: 2190]}
462-635 -33.600 26  d1ebua1 c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogenase {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
614-798 -62.000 33  d1ebua2 d.81.1.2 (A:151-340) Homoserine dehydrogenase {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
3 gi|16758996|ref|NP_454613.1| homoserine kinase (STY0003) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 309 SCOP207 2-167 -62.200 30  d1h72c1 d.14.1.5 (C:5-167) Homoserine kinase {Methanococcus jannaschii [TaxId: 2190]}
170-308 -49.000 28  d1h72c2 d.58.26.1 (C:168-300) Homoserine kinase {Methanococcus jannaschii [TaxId: 2190]}
4 gi|16758997|ref|NP_454614.1| threonine synthase (STY0004) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 428 SCOP207 1-428 -118.000 93  d1vb3a1 c.79.1.1 (A:1-428) Threonine synthase {Escherichia coli [TaxId: 562]}
5 gi|16758998|ref|NP_454615.1| hypothetical protein (STY0005) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 257 SCOP207 118-230 -7.040 13  d3n0pb2 b.1.2.1 (B:101-206) automated matches {Human (Homo sapiens) [TaxId: 9606]}
6 gi|16758999|ref|NP_454616.1| putative amino-acid transport protein (STY0006) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 476 SCOP207 59-448 -11.000 12  d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
7 gi|16759000|ref|NP_454617.1| transaldolase B (STY0007) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 317 SCOP207 2-317 -104.000 94  d3cwna_ c.1.10.1 (A:) automated matches {Escherichia coli [TaxId: 562]}
8 gi|16759001|ref|NP_454618.1| molybdenum cofactor biosynthesis protein MogA (STY0008) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 196 SCOP207 2-191 -72.800 93  d1di6a_ c.57.1.1 (A:) MogA {Escherichia coli [TaxId: 562]}
9 gi|16759002|ref|NP_454619.1| hypothetical protein (STY0009) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 188 SCOP207 9-175 -5.620 12  d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
10 gi|16759003|ref|NP_454620.1| hypothetical protein (STY0010) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 237 SCOP207 2-142 -6.480 11  d1nf4a_ a.25.1.1 (A:) Bacterioferritin (cytochrome b1) {Desulfovibrio desulfuricans [TaxId: 876]}
11 gi|16759004|ref|NP_454621.1|(removed signalp:1-23) hypothetical protein (STY0011) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 111 SCOP207 15-90 -6.570 7  d1v1oa2 d.15.6.1 (A:109-213) Exotoxin 1 (SET1, Superantigen-like protein 7) {Staphylococcus aureus [TaxId: 1280]}
12 gi|16759005|ref|NP_454622.1| molecular chaperone DnaK (STY0012) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 638 SCOP207 3-184 -80.100 53  d3i33a1 c.55.1.1 (A:6-189) automated matches {Human (Homo sapiens) [TaxId: 9606]}
182-382 -72.900 44  d3i33a2 c.55.1.1 (A:190-384) automated matches {Human (Homo sapiens) [TaxId: 9606]}
389-506 -59.000 97  d4f01a1 b.130.1.1 (A:389-506) automated matches {Escherichia coli K-12 [TaxId: 83333]}
507-618 -26.400 21  d1u00a1 a.8.4.1 (A:504-615) Chaperone protein hscA (Hsc66) {Escherichia coli [TaxId: 562]}
13 gi|16759006|ref|NP_454623.1| chaperone protein DnaJ (STY0013) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 379 SCOP207 1-80 -44.900 40  d2yuaa1 a.2.3.0 (A:8-93) automated matches {Human (Homo sapiens) [TaxId: 9606]}
2-110 -35.800 18  d1gh6a1 a.2.3.1 (A:7-117) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]}
134-212 -36.700 96  d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]}
183-257 -23.000 25  d2q2ga1 b.4.1.0 (A:4-86) automated matches {Cryptosporidium parvum [TaxId: 353152]}
258-350 -28.000 24  d3agxa2 b.4.1.0 (A:246-340) automated matches {Human (Homo sapiens) [TaxId: 9606]}
14 gi|16759007|ref|NP_454624.1| putative regulatory protein (STY0014) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 315 SCOP207 6-96 -42.200 26  d2esna1 a.4.5.37 (A:3-91) Probable LysR-type transcriptional regulator PA0477 {Pseudomonas aeruginosa [TaxId: 287]}
94-313 -54.800 17  d2y7pa1 c.94.1.1 (A:90-301) automated matches {Burkholderia sp. [TaxId: 233098]}
15 gi|16759008|ref|NP_454625.1| hypothetical protein (STY0015) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 114 SCOP207 81-103 -6.570 17  d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}
16 gi|16759009|ref|NP_454626.1| hypothetical protein (STY0016) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 177 SCOP207 1-177 -82.100 34  d2ikba1 d.2.1.9 (A:1-163) Hypothetical protein NMB1012 {Neisseria meningitidis [TaxId: 487]}
17 gi|16759010|ref|NP_454627.1| hypothetical protein (STY0017) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 147 SCOP207 8-107 -32.200 16  d5ju7a1 a.4.6.0 (A:2-107) automated matches {Escherichia coli [TaxId: 83333]}
18 gi|16759011|ref|NP_454628.1| putative chitinase (STY0018) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 699 SCOP207 42-410 -74.300 24  d1itxa1 c.1.8.5 (A:33-337,A:410-451) Chitinase A1 {Bacillus circulans [TaxId: 1397]}
49-441 -71.500 23  d1w9pa1 c.1.8.5 (A:39-298,A:361-433) Chitinase 1 {Aspergillus fumigatus [TaxId: 5085]}
51-502 -67.500 20  d1goia2 c.1.8.5 (A:3-291,A:380-446) Chitinase B, catalytic domain {Serratia marcescens [TaxId: 615]}
19 gi|16759012|ref|NP_454629.1| hypothetical protein (STY0019) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 383 SCOP207 299-383 -7.380 11  d1ti6b1 b.3.5.1 (B:196-274) Transhydroxylase beta subunit, BthL, C-terminal domain {Pelobacter acidigallici [TaxId: 35816]}
20 gi|16759013|ref|NP_454630.1| hypothetical protein (STY0020) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 620 SCOP207 211-526 -12.400 11  d1dysa_ c.6.1.1 (A:) Cellobiohydrolase II (Cel6) {Humicola insolens, Cel6b [TaxId: 34413]}

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rodrigues AP, Grant BJ, Godzik A, Friedberg I. The 2006 automated function prediction meeting. BMC Bioinformatics. 2007 May 22;8 Suppl 4:S1-4.