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# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|16763391|ref|NP_459006.1| thr operon leader peptide (STM0001) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] 21 COG1018 1-20 -2.280 30  [T] KOG2417 Predicted G-protein coupled receptor
CSGID 2-21 -3.590 25  IDP91738 Q5YB85_STRSG [Streptococcus sp. `group G`]
H.sapiens 5-18 -4.610 14  sp|Q14839|CHD4_HUMAN Chromodomain-helicase-DNA-binding protein 4 OS=Homo sapiens GN=CHD4 PE=1 SV=2
HGM_OVER 1-20 -0.897 15  PB045072 _Gut.Meta.Jp.0111663_ gi|163310555|dbj|BABD01000145.1||3 (+ 1662:2028~0 complete)
NEW_HUMAN_DOMAINS 2-18 -3.970 29  sp|O43520|AT8B1_HUMAN Probable phospholipid-transporting ATPase IC OS=Homo sapiens GN=ATP8B1 PE=1 SV=3
PDB1018 2-14 -3.120 38  2na6_A mol:protein length:28 Tumor necrosis factor receptor superfamily member 6
PfamA32U 1-20 -3.220 25  PF12537.8; Q0UJI5_PHANO/200-267; The Golgi pH Regulator (GPHR) Family N-terminal
SCOP207 1-21 -2.040 19  d2f9ia1 c.14.1.0 (A:1-314) automated matches {Staphylococcus aureus [TaxId: 1280]}
VFDB 1-20 -2.280 30  [T] KOG2417 Predicted G-protein coupled receptor
2 gi|16763392|ref|NP_459007.1| bifunctional aspartokinase I/homoserine dehydrogenase I (STM0002) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] 820 COG1018 1-481 -113.000 26  [E] COG0527 Aspartokinases
456-820 -83.000 68  [E] COG0460 Homoserine dehydrogenase
CSGID 1-817 -212.000 29  IDP00585 gene: metL; bifunctional aspartate kinase II/homoserine dehydrogenase II YPO0116 [Yersinia pestis CO92]
H.sapiens 2-263 -17.300 14  sp|P54886|P5CS_HUMAN Delta-1-pyrroline-5-carboxylate synthase OS=Homo sapiens GN=ALDH18A1 PE=1 SV=2
119-298 -11.900 13  sp|P54886|P5CS_HUMAN Delta-1-pyrroline-5-carboxylate synthase OS=Homo sapiens GN=ALDH18A1 PE=1 SV=2
HGM_OVER 187-444 -2.240 10  PB083081 gi|160890648|ref|ZP_02071651.1| hypothetical protein BACUNI_03093 [Bacteroides uniformis ATCC 8492]gi|156859647|gb|EDO53078.1| hypothetical protein BACUNI_03093 [Bacteroides uniformis ATCC 8492]
NEW_HUMAN_DOMAINS 226-272 -5.770 15  tr|C9J120|C9J120_HUMAN Uncharacterized protein OS=Homo sapiens GN=ZNF445 PE=4 SV=1
PDB1018 1-465 -114.000 35  3c1m_A mol:protein length:473 Probable aspartokinase
462-817 -77.200 31  1q7g_A mol:protein length:359 Homoserine dehydrogenase
PfamA32U 2-284 -12.400 16  PF00696.28; PROJ_BACSU/8-238; Amino acid kinase family
614-811 -38.100 27  PF00742.19; R5EAW4_9BURK/138-316; Homoserine dehydrogenase
SCOP207 2-300 -92.600 34  d3c20a1 c.73.1.3 (A:2-303) automated matches {Methanocaldococcus jannaschii [TaxId: 2190]}
303-395 -18.700 22  d2cdqa2 d.58.18.10 (A:329-419) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
396-462 -25.200 43  d3c20a3 d.58.18.0 (A:404-470) automated matches {Methanocaldococcus jannaschii [TaxId: 2190]}
462-635 -33.400 26  d1ebua1 c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogenase {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
614-798 -62.100 33  d1ebua2 d.81.1.2 (A:151-340) Homoserine dehydrogenase {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
VFDB 1-481 -113.000 26  [E] COG0527 Aspartokinases
456-820 -83.000 68  [E] COG0460 Homoserine dehydrogenase
3 gi|16763393|ref|NP_459008.1| homoserine kinase (STM0003) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] 309 COG1018 2-309 -96.900 70  [E] COG0083 Homoserine kinase
CSGID 2-308 -85.400 24  IDP90702 gene: thrB; homoserine kinase [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0134 [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]
H.sapiens 3-286 -27.300 12  sp|Q8N0W3|FUK_HUMAN L-fucose kinase OS=Homo sapiens GN=FUK PE=2 SV=2
HGM_OVER 89-245 -3.410 7  PB037276 Q24TM0_DESHY/1-190 PB037276; Pfam-B_37276;
NEW_HUMAN_DOMAINS 178-263 -5.510 18  tr|E9PFE0|E9PFE0_HUMAN Uncharacterized protein OS=Homo sapiens GN=CIITA PE=4 SV=1
PDB1018 1-309 -101.000 76  4rpf_A mol:protein length:310 Homoserine kinase
PfamA32U 83-150 -23.000 23  PF00288.26; ISPE_BACSU/86-144; GHMP kinases N terminal domain
210-286 -11.100 14  PF08544.13; Q64T43_BACFR/846-929; GHMP kinases C terminal
SCOP207 2-167 -62.200 30  d1h72c1 d.14.1.5 (C:5-167) Homoserine kinase {Methanococcus jannaschii [TaxId: 2190]}
170-308 -49.000 28  d1h72c2 d.58.26.1 (C:168-300) Homoserine kinase {Methanococcus jannaschii [TaxId: 2190]}
VFDB 2-309 -96.900 70  [E] COG0083 Homoserine kinase
4 gi|16763394|ref|NP_459009.1| threonine synthase (STM0004) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] 428 COG1018 1-427 -103.000 27  [E] COG0498 Threonine synthase
CSGID 1-428 -126.000 100  IDP00901 gene: thrC; threonine synthase STM0004 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
H.sapiens 1-428 -99.800 25  sp|Q86YJ6|THNS2_HUMAN Threonine synthase-like 2 OS=Homo sapiens GN=THNSL2 PE=2 SV=3
HGM_OVER 103-286 -2.300 9  PB001823 Q5L7Q9_BACFN/1-326 PB001823; Pfam-B_1823;
NEW_HUMAN_DOMAINS 169-428 -4.130 12  sp|O15050|TRNK1_HUMAN TPR and ankyrin repeat-containing protein 1 OS=Homo sapiens GN=TRANK1 PE=2 SV=4
PDB1018 1-428 -118.000 93  1vb3_A mol:protein length:428 Threonine synthase
PfamA32U 2-80 -27.700 31  PF14821.6; Q21LF7_SACD2/2-80; Threonine synthase N terminus
92-375 -20.000 12  PF00291.25; A0Z504_9GAMM/17-322; Pyridoxal-phosphate dependent enzyme
SCOP207 1-428 -118.000 93  d1vb3a1 c.79.1.1 (A:1-428) Threonine synthase {Escherichia coli [TaxId: 562]}
VFDB 1-427 -103.000 27  [E] COG0498 Threonine synthase
5 gi|16763395|ref|NP_459010.1| hypothetical protein (STM0005) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] 257 COG1018 1-257 -110.000 86  [S] COG3022 Uncharacterized protein conserved in bacteria
CSGID 1-257 -109.000 67  IDP91427 hypothetical protein VV1_0535 [Vibrio vulnificus CMCP6] VV1_0535 [Vibrio vulnificus CMCP6]
H.sapiens 4-249 -6.870 10  sp|Q9UKG9|OCTC_HUMAN Peroxisomal carnitine O-octanoyltransferase OS=Homo sapiens GN=CROT PE=1 SV=2
HGM_OVER 32-256 -3.730 11  PB002104 Q72PH8_LEPIC/1-220 PB002104; Pfam-B_2104;
NEW_HUMAN_DOMAINS 111-224 -5.520 11  sp|Q8IWT3|CUL9_HUMAN Cullin-9 OS=Homo sapiens GN=CUL9 PE=1 SV=2
PDB1018 1-257 -107.000 86  5caj_A mol:protein length:278 UPF0246 protein YaaA
PfamA32U 1-243 -102.000 58  PF03883.14; D4ZH13_SHEVD/1-244; Peroxide stress protein YaaA
SCOP207 118-230 -7.010 13  d3n0pb2 b.1.2.1 (B:101-206) automated matches {Human (Homo sapiens) [TaxId: 9606]}
VFDB 1-257 -110.000 86  [S] COG3022 Uncharacterized protein conserved in bacteria
6 gi|16763396|ref|NP_459011.1| alanine/glycine transport protein (STM0006) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] 476 COG1018 1-471 -123.000 43  [E] COG1115 Na+/alanine symporter
CSGID 1-476 -134.000 51  IDP91426 Na+/alanine symporter [Vibrio vulnificus CMCP6] VV1_0536 [Vibrio vulnificus CMCP6]
H.sapiens 55-441 -14.600 10  sp|Q9UHI5|LAT2_HUMAN Large neutral amino acids transporter small subunit 2 OS=Homo sapiens GN=SLC7A8 PE=1 SV=1
HGM_OVER 260-440 -3.610 11  HGC00762 gi|162641591|dbj|BAAX01018014.1|1.0 TMP00997;
NEW_HUMAN_DOMAINS 43-131 -5.570 10  tr|F8WAF8|F8WAF8_HUMAN Uncharacterized protein OS=Homo sapiens GN=ZNF140 PE=4 SV=1
PDB1018 32-441 -11.800 14  5oqt_A mol:protein length:471 Amino acid transporter
52-431 -14.400 12  3gi8_C mol:protein length:444 Uncharacterized protein MJ0609
PfamA32U 47-453 -109.000 47  PF01235.17; C5DAE3_GEOSW/49-446; Sodium:alanine symporter family
SCOP207 59-448 -10.700 12  d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
VFDB 1-471 -123.000 43  [E] COG1115 Na+/alanine symporter
7 gi|16763397|ref|NP_459012.1| transaldolase B (STM0007) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] 317 COG1018 1-317 -104.000 87  [G] COG0176 Transaldolase
CSGID 1-317 -98.500 48  IDP02095 gene: talA; transaldolase B [Francisella tularensis subsp. tularensis SCHU S4] FTT1093c [Francisella tularensis subsp. tularensis SCHU S4]
H.sapiens 1-317 -97.300 60  sp|P37837|TALDO_HUMAN Transaldolase OS=Homo sapiens GN=TALDO1 PE=1 SV=2
HGM_OVER 1-162 -3.230 11  PB001934 Q6PSL5_CHLRE/821-1150 PB001934; Pfam-B_1934;
NEW_HUMAN_DOMAINS 91-180 -4.790 12  sp|Q5XKP0|QIL1_HUMAN Protein QIL1 OS=Homo sapiens GN=QIL1 PE=1 SV=1
PDB1018 1-317 -102.000 94  3cwn_A mol:protein length:337 Transaldolase B
PfamA32U 14-313 -94.100 58  PF00923.19; Q966C7_CAEEL/13-315; Transaldolase/Fructose-6-phosphate aldolase
SCOP207 2-317 -104.000 94  d3cwna_ c.1.10.1 (A:) automated matches {Escherichia coli [TaxId: 562]}
VFDB 1-317 -104.000 87  [G] COG0176 Transaldolase
8 gi|16763398|ref|NP_459013.1| molybdenum cofactor biosynthesis protein MogA (STM0008) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] 196 COG1018 2-191 -69.200 74  [H] COG0521 Molybdopterin biosynthesis enzymes
CSGID 1-188 -67.700 50  IDP06143 gene: mogA; molybdenum cofactor biosynthesis protein MogA [Helicobacter pylori J99] NP_223453 [Helicobacter pylori J99]
H.sapiens 2-186 -56.400 33  sp|Q9NQX3|GEPH_HUMAN Gephyrin OS=Homo sapiens GN=GPHN PE=1 SV=1
HGM_OVER 46-135 -3.520 12  HGC00164 gi|163636082|dbj|BABG01000191.1|4.0 TMP00833;
NEW_HUMAN_DOMAINS 5-94 -5.860 10  sp|Q9NX45|SOLH2_HUMAN Spermatogenesis- and oogenesis-specific basic helix-loop-helix-containing protein 2 OS=Homo sapiens GN=SOHLH2 PE=2 SV=2
PDB1018 1-192 -69.800 91  1di6_A mol:protein length:195 MOLYBDENUM COFACTOR BIOSYNTHETIC ENZYME
PfamA32U 8-152 -27.000 18  PF00994.24; CINAL_DESPS/4-169; Probable molybdopterin binding domain
SCOP207 2-191 -70.300 92  d1di6a_ c.57.1.1 (A:) MogA {Escherichia coli [TaxId: 562]}
VFDB 2-191 -69.200 74  [H] COG0521 Molybdopterin biosynthesis enzymes
9 gi|16763399|ref|NP_459014.1| hypothetical protein (STM0009) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] 188 COG1018 3-184 -91.400 65  [S] COG1584 Predicted membrane protein
CSGID 3-188 -95.100 64  IDP91444 hypothetical protein VV1_0416 [Vibrio vulnificus CMCP6] VV1_0416 [Vibrio vulnificus CMCP6]
H.sapiens 7-118 -9.810 17  sp|Q8N5U1|M4A15_HUMAN Membrane-spanning 4-domains subfamily A member 15 OS=Homo sapiens GN=MS4A15 PE=2 SV=2
47-183 -10.100 9  sp|Q3C1V0|M4A18_HUMAN Membrane-spanning 4-domains subfamily A member 18 OS=Homo sapiens GN=MS4A18 PE=2 SV=2
HGM_OVER 12-59 -5.020 17  PB038151 Q8A4A5_BACTN/1-178 PB038151; Pfam-B_38151;
NEW_HUMAN_DOMAINS 47-75 -7.390 17  sp|Q7Z404|TMC4_HUMAN Transmembrane channel-like protein 4 OS=Homo sapiens GN=TMC4 PE=2 SV=3
PDB1018 1-187 -98.100 95  5ys3_A mol:protein length:192 Succinate-Acetate Permease
PfamA32U 3-187 -86.500 31  PF01184.19; A7TND9_VANPO/71-277; GPR1/FUN34/yaaH family
SCOP207 9-175 -5.620 12  d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
VFDB 3-184 -91.400 65  [S] COG1584 Predicted membrane protein
10 gi|16763400|ref|NP_459015.1| hypothetical protein (STM0010) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] 237 COG1018 1-237 -81.000 87  [S] COG4735 Uncharacterized protein conserved in bacteria
CSGID 5-136 -5.950 15  IDP04265 putative cell division protein DivIVA [Clostridium perfringens ATCC 13124] CPF_2105 [Clostridium perfringens ATCC 13124]
H.sapiens 71-136 -7.830 12  sp|P52655|TF2AA_HUMAN Transcription initiation factor IIA subunit 1 OS=Homo sapiens GN=GTF2A1 PE=1 SV=1
HGM_OVER 1-141 -5.560 9  PB007147 Q11UU2_CYTH3/1-245 PB007147; Pfam-B_7147;
NEW_HUMAN_DOMAINS 14-122 -5.340 12  sp|Q9ULG6|CCPG1_HUMAN Cell cycle progression protein 1 OS=Homo sapiens GN=CCPG1 PE=1 SV=3
PDB1018 78-133 -7.920 16  5iy6_N mol:protein length:376 Transcription initiation factor IIA subunit 1
PfamA32U 5-39 -10.700 31  PF13099.6; E3D0J1_9BACT/3-37; Domain of unknown function (DUF3944 topsan)
SCOP207 2-142 -6.480 11  d1nf4a_ a.25.1.1 (A:) Bacterioferritin (cytochrome b1) {Desulfovibrio desulfuricans [TaxId: 876]}
VFDB 1-237 -81.000 87  [S] COG4735 Uncharacterized protein conserved in bacteria
11 gi|16763401|ref|NP_459016.1|(removed signalp:1-23) hypothetical protein (STM0011) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] 111 COG1018 2-111 -6.770 9  [S] COG4425 Predicted membrane protein
CSGID 30-111 -6.650 13  IDP91909 cell wall surface anchor family protein, partial [Streptococcus pneumoniae str. Canada MDR_19A] SpneCM_010100002785 [Streptococcus pneumoniae str. Canada MDR_19A]
H.sapiens 7-111 -6.610 6  sp|Q5T4S7|UBR4_HUMAN E3 ubiquitin-protein ligase UBR4 OS=Homo sapiens GN=UBR4 PE=1 SV=1
HGM_OVER 4-111 -5.580 11  HGC00947 gi|162844524|dbj|BABA01000185.1|4.0 TMP01280;
NEW_HUMAN_DOMAINS 1-111 -6.440 3  sp|Q8N5W9|F101B_HUMAN Protein FAM101B OS=Homo sapiens GN=FAM101B PE=1 SV=1
PDB1018 40-111 -7.910 11  1mt7_A mol:protein length:99 PROTEASE RETROPEPSIN
PfamA32U 1-109 -58.000 79  PF10807.8; A6T4F3_KLEP7/3-132; Protein of unknown function (DUF2541 topsan)
SCOP207 15-90 -6.730 7  d1v1oa2 d.15.6.1 (A:109-213) Exotoxin 1 (SET1, Superantigen-like protein 7) {Staphylococcus aureus [TaxId: 1280]}
VFDB 2-111 -6.770 9  [S] COG4425 Predicted membrane protein
12 gi|16763402|ref|NP_459017.1| molecular chaperone DnaK (STM0012) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] 638 COG1018 1-638 -163.000 56  [O] COG0443 Molecular chaperone
CSGID 1-638 -172.000 73  IDP02646 gene: dnaK; chaperone protein dnak [Coxiella burnetii RSA 493] CBU_1290 [Coxiella burnetii RSA 493]
H.sapiens 3-505 -127.000 31  sp|Q0VDF9|HSP7E_HUMAN Heat shock 70 kDa protein 14 OS=Homo sapiens GN=HSPA14 PE=1 SV=1
255-554 -92.400 63  sp|P38646|GRP75_HUMAN Stress-70 protein, mitochondrial OS=Homo sapiens GN=HSPA9 PE=1 SV=2
297-586 -82.100 52  sp|P11021|GRP78_HUMAN(removed signalp:1-18) 78 kDa glucose-regulated protein OS=Homo sapiens GN=HSPA5 PE=1 SV=2
405-630 -63.700 48  sp|P38646|GRP75_HUMAN Stress-70 protein, mitochondrial OS=Homo sapiens GN=HSPA9 PE=1 SV=2
HGM_OVER 115-495 -7.850 12  PB162065 _Gut.Meta.Jp.0089312_ gi|162832207|dbj|BABA01012502.1||1 (- 0:1326~0 complete)
NEW_HUMAN_DOMAINS 382-502 -8.730 18  sp|O43301|HS12A_HUMAN Heat shock 70 kDa protein 12A OS=Homo sapiens GN=HSPA12A PE=1 SV=2
PDB1018 1-605 -169.000 96  5nro_A mol:protein length:611 Chaperone protein DnaK
2-635 -156.000 47  5fpn_A mol:protein length:640 HEAT SHOCK-RELATED 70 KDA PROTEIN 2
PfamA32U 4-604 -162.000 62  PF00012.20; HSP7E_DROME/54-653; Hsp70 protein
SCOP207 3-184 -79.800 53  d3i33a1 c.55.1.1 (A:6-189) automated matches {Human (Homo sapiens) [TaxId: 9606]}
182-382 -72.500 44  d3i33a2 c.55.1.1 (A:190-384) automated matches {Human (Homo sapiens) [TaxId: 9606]}
389-506 -58.900 97  d4f01a1 b.130.1.1 (A:389-506) automated matches {Escherichia coli K-12 [TaxId: 83333]}
507-618 -26.300 21  d1u00a1 a.8.4.1 (A:504-615) Chaperone protein hscA (Hsc66) {Escherichia coli [TaxId: 562]}
VFDB 1-638 -163.000 56  [O] COG0443 Molecular chaperone
13 gi|16763403|ref|NP_459018.1| chaperone protein DnaJ (STM0013) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] 379 COG1018 1-375 -124.000 58  [O] COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain
CSGID 1-379 -130.000 87  IDP00478 gene: dnaJ; chaperone protein DnaJ YPO0469 [Yersinia pestis CO92]
H.sapiens 1-376 -106.000 33  sp|Q96EY1|DNJA3_HUMAN(removed signalp:1-21) DnaJ homolog subfamily A member 3, mitochondrial OS=Homo sapiens GN=DNAJA3 PE=1 SV=2
HGM_OVER 147-225 -5.010 15  HGC00991 gi|163600283|dbj|BABF01000984.1|3.0 TMP01348;
NEW_HUMAN_DOMAINS 111-203 -6.820 20  sp|Q5T197|DCST1_HUMAN DC-STAMP domain-containing protein 1 OS=Homo sapiens GN=DCST1 PE=2 SV=1
PDB1018 1-359 -96.100 40  3lz8_A mol:protein length:329 Putative chaperone DnaJ
PfamA32U 5-67 -39.100 55  PF00226.31; Q22028_CAEEL/17-79; DnaJ domain
28-204 -10.000 9  PF05458.12; SIVA_HUMAN/1-175; Cd27 binding protein (Siva)
120-333 -76.400 34  PF01556.18; T0NBZ6_9EURY/129-343; DnaJ C terminal domain
SCOP207 1-80 -44.900 40  d2yuaa1 a.2.3.0 (A:8-93) automated matches {Human (Homo sapiens) [TaxId: 9606]}
2-110 -35.800 18  d1gh6a1 a.2.3.1 (A:7-117) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]}
134-212 -36.700 96  d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]}
183-257 -23.000 25  d2q2ga1 b.4.1.0 (A:4-86) automated matches {Cryptosporidium parvum [TaxId: 353152]}
258-350 -28.000 24  d3agxa2 b.4.1.0 (A:246-340) automated matches {Human (Homo sapiens) [TaxId: 9606]}
VFDB 1-375 -124.000 58  [O] COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain
14 gi|16763404|ref|NP_459019.1| transcriptional regulator (STM0014) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] 315 COG1018 7-313 -31.100 13  [K] COG0583 Transcriptional regulator
CSGID 10-313 -42.700 13  IDP00586 gene: metR; lysR-family transcriptional regulatory protein YPO3789 [Yersinia pestis CO92]
H.sapiens 2-86 -7.710 16  sp|Q86Y13|DZIP3_HUMAN E3 ubiquitin-protein ligase DZIP3 OS=Homo sapiens GN=DZIP3 PE=1 SV=2
HGM_OVER 16-107 -4.080 15  PB003564 gi|46242789|gb|AAS83494.1| TraD [Bacteroides fragilis]
NEW_HUMAN_DOMAINS 6-90 -4.600 7  sp|Q9P2G1|AKIB1_HUMAN Ankyrin repeat and IBR domain-containing protein 1 OS=Homo sapiens GN=ANKIB1 PE=1 SV=3
PDB1018 3-313 -93.600 19  1utb_A mol:protein length:315 LYSR-TYPE REGULATORY PROTEIN
PfamA32U 16-70 -13.100 20  PF00126.27; Q8EIK0_SHEON/8-63; Bacterial regulatory helix-turn-helix protein, lysR family
95-312 -9.640 10  PF03466.20; Q98I60_RHILO/88-294; LysR substrate binding domain
SCOP207 6-96 -42.300 26  d2esna1 a.4.5.37 (A:3-91) Probable LysR-type transcriptional regulator PA0477 {Pseudomonas aeruginosa [TaxId: 287]}
94-313 -55.600 17  d2y7pa1 c.94.1.1 (A:90-301) automated matches {Burkholderia sp. [TaxId: 233098]}
VFDB 7-313 -31.100 13  [K] COG0583 Transcriptional regulator
15 gi|16763405|ref|NP_459020.1| bacteriophage protein (STM0015) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] 114 COG1018 18-94 -10.200 13  [D] COG0239 Integral membrane protein possibly involved in chromosome condensation
CSGID 77-103 -6.130 25  IDP02042 gene: asd; aspartate-semialdehyde dehydrogenase [Coxiella burnetii RSA 493] CBU_0875 [Coxiella burnetii RSA 493]
H.sapiens 16-114 -10.100 9  sp|Q6PRD1|GP179_HUMAN(removed signalp:1-25) Probable G-protein coupled receptor 179 OS=Homo sapiens GN=GPR179 PE=2 SV=2
HGM_OVER 29-88 -5.340 10  PB004718 Q5LIA4_BACFN/1-189 PB004718; Pfam-B_4718;
NEW_HUMAN_DOMAINS 27-72 -6.170 17  sp|Q9Y485|DMXL1_HUMAN DmX-like protein 1 OS=Homo sapiens GN=DMXL1 PE=1 SV=3
PDB1018 17-94 -9.700 12  5kbn_A mol:protein length:147 Putative fluoride ion transporter CrcB
PfamA32U 21-100 -15.800 5  PF16083.5; E8RPS2_ASTEC/15-92; LydA holin phage, holin superfamily III
SCOP207 81-102 -6.590 13  d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}
VFDB 18-94 -10.200 13  [D] COG0239 Integral membrane protein possibly involved in chromosome condensation
16 gi|16763406|ref|NP_459021.1| hypothetical protein (STM0016) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] 177 COG1018 1-177 -75.000 25  [R] COG3926 Putative secretion activating protein
CSGID 65-136 -10.100 13  IDP05636 putative peptidoglycan-binding/hydrolysing protein [Clostridium difficile 630] CD2388 [Peptoclostridium difficile 630]
H.sapiens 43-175 -7.750 12  sp|Q8WUM4|PDC6I_HUMAN Programmed cell death 6-interacting protein OS=Homo sapiens GN=PDCD6IP PE=1 SV=1
HGM_OVER 77-173 -5.870 17  HGC00485 gi|163636056|dbj|BABG01000217.1|3.0 TMP00523;
NEW_HUMAN_DOMAINS 44-177 -7.640 10  sp|P42695|CNDD3_HUMAN Condensin-2 complex subunit D3 OS=Homo sapiens GN=NCAPD3 PE=1 SV=2
PDB1018 1-177 -82.800 34  2is5_A mol:protein length:166 Hypothetical protein
PfamA32U 5-88 -51.000 38  PF05838.12; S5YCL9_PARAH/8-97; Glycosyl hydrolase 108
91-176 -36.200 23  PF09374.10; Q8EDS2_SHEON/119-186; Predicted Peptidoglycan domain
SCOP207 1-177 -82.300 34  d2ikba1 d.2.1.9 (A:1-163) Hypothetical protein NMB1012 {Neisseria meningitidis [TaxId: 487]}
VFDB 1-177 -75.000 25  [R] COG3926 Putative secretion activating protein
17 gi|16763407|ref|NP_459022.1| hypothetical protein (STM0017) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] 147 COG1018 2-140 -42.900 15  [K] COG3710 DNA-binding winged-HTH domains
CSGID 1-147 -64.100 100  IDP01845 hypothetical protein STM0017 [Salmonella typhimurium LT2] STM0017 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
H.sapiens 1-95 -7.870 8  sp|Q8N568|DCLK2_HUMAN Serine/threonine-protein kinase DCLK2 OS=Homo sapiens GN=DCLK2 PE=2 SV=4
HGM_OVER 1-107 -4.820 11  PB001025 Q1QFV3_NITHX/1-288 PB001025; Pfam-B_1025;
NEW_HUMAN_DOMAINS 1-97 -6.870 11  sp|Q70CQ2|UBP34_HUMAN Ubiquitin carboxyl-terminal hydrolase 34 OS=Homo sapiens GN=USP34 PE=1 SV=2
PDB1018 8-107 -32.900 16  5ju7_A mol:protein length:110 Transcriptional activator CadC
17-141 -15.100 10  2fez_A mol:protein length:388 Probable regulatory protein embR
PfamA32U 25-102 -21.700 15  PF00486.28; Q9CGU0_LACLA/149-224; Transcriptional regulatory protein, C terminal
SCOP207 8-107 -32.300 16  d5ju7a1 a.4.6.0 (A:2-107) automated matches {Escherichia coli [TaxId: 83333]}
VFDB 2-140 -42.900 15  [K] COG3710 DNA-binding winged-HTH domains
18 gi|16763408|ref|NP_459023.1| exochitinase (STM0018) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] 699 COG1018 1-512 -123.000 100  [G] COG3325 Chitinase
30-699 -31.900 9  [R] COG3858 Predicted glycosyl hydrolase
CSGID 2-490 -86.600 20  IDP05198 putative bifunctional protein: peroxiredoxin/chitinase [Clostridium difficile 630] CD1433 [Peptoclostridium difficile 630]
36-697 -108.000 18  IDP05654 hypothetical protein lmo0105 [Listeria monocytogenes EGD-e] lmo0105 [Listeria monocytogenes EGD-e]
H.sapiens 53-578 -85.300 17  sp|Q9BZP6|CHIA_HUMAN(removed signalp:1-21) Acidic mammalian chitinase OS=Homo sapiens GN=CHIA PE=1 SV=1
429-645 -18.000 9  sp|Q12889|OVGP1_HUMAN(removed signalp:1-21) Oviduct-specific glycoprotein OS=Homo sapiens GN=OVGP1 PE=2 SV=1
HGM_OVER 176-304 -4.930 17  PB007147 Q11UU2_CYTH3/1-245 PB007147; Pfam-B_7147;
NEW_HUMAN_DOMAINS 192-273 -5.380 9  sp|Q6UXT9|ABH15_HUMAN Abhydrolase domain-containing protein 15 OS=Homo sapiens GN=ABHD15 PE=2 SV=2
PDB1018 7-698 -101.000 25  5zl9_A mol:protein length:618 Chitinase AB
PfamA32U 55-465 -84.900 28  PF00704.28; Q9WFU7_9ABAC/160-544; Glycosyl hydrolases family 18
SCOP207 42-410 -74.500 24  d1itxa1 c.1.8.5 (A:33-337,A:410-451) Chitinase A1 {Bacillus circulans [TaxId: 1397]}
49-441 -71.200 23  d1w9pa1 c.1.8.5 (A:39-298,A:361-433) Chitinase 1 {Aspergillus fumigatus [TaxId: 5085]}
51-502 -67.300 19  d1goia2 c.1.8.5 (A:3-291,A:380-446) Chitinase B, catalytic domain {Serratia marcescens [TaxId: 615]}
VFDB 1-512 -123.000 100  [G] COG3325 Chitinase
30-699 -31.900 9  [R] COG3858 Predicted glycosyl hydrolase
19 gi|16763409|ref|NP_459024.1| hydroxymethyltransferase (STM0019) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] 998 COG1018 1-564 -9.900 11  [M] COG4932 Predicted outer membrane protein
CSGID 1-566 -12.300 6  IDP91521 C2 domain-containing protein [Toxoplasma gondii ME49] TGME49_040910 [Toxoplasma gondii ME49]
1-770 -9.520 8  IDP05663 hypothetical protein lmo0333 [Listeria monocytogenes EGD-e] lmo0333 [Listeria monocytogenes EGD-e]
H.sapiens 230-527 -9.170 10  sp|P69849|NOMO3_HUMAN(removed signalp:1-31) Nodal modulator 3 OS=Homo sapiens GN=NOMO3 PE=2 SV=2
HGM_OVER 800-992 -4.220 7  PB025553 _HOMD.0078651_ pint_c_1_4510 Prevotella intermedia 17 [1755134 - 1755736] ORF
NEW_HUMAN_DOMAINS 2-461 -10.100 10  sp|A6NHR9|SMHD1_HUMAN Structural maintenance of chromosomes flexible hinge domain-containing protein 1 OS=Homo sapiens GN=SMCHD1 PE=1 SV=2
PDB1018 633-994 -8.490 10  4avn_A mol:protein length:420 CELLOBIOHYDROLASE. GLYCOSYL HYDROLASE FAMILY 6
PfamA32U 1-429 -9.990 9  PF05895.12; Q56S85_9CAUD/1-634; Siphovirus protein of unknown function (DUF859 topsan)
SCOP207 633-904 -8.140 12  d2bogx_ c.6.1.1 (X:) Cellulase E2 {Thermobifida fusca YX [TaxId: 269800]}
VFDB 1-564 -9.900 11  [M] COG4932 Predicted outer membrane protein
20 gi|16763410|ref|NP_459025.1| cytoplasmic protein (STM0020) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] 234 COG1018 4-233 -15.200 8  [T] KOG1113 cAMP-dependent protein kinase types I and II, regulatory subunit
44-228 -33.800 12  [T] COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases
CSGID 34-228 -47.500 17  IDP91810 gene: crp; DNA-binding transcriptional dual regulator [Escherichia coli str. K-12 substr. MG1655] b3357 [Escherichia coli str. K-12 substr. MG1655]
H.sapiens 2-228 -32.400 9  sp|Q8IY17|PLPL6_HUMAN Neuropathy target esterase OS=Homo sapiens GN=PNPLA6 PE=1 SV=2
HGM_OVER 159-222 -6.000 17  PB001025 Q1QFV3_NITHX/1-288 PB001025; Pfam-B_1025;
NEW_HUMAN_DOMAINS 154-230 -7.450 11  sp|Q9UJA3|MCM8_HUMAN DNA replication licensing factor MCM8 OS=Homo sapiens GN=MCM8 PE=1 SV=2
PDB1018 6-229 -48.500 12  3iwz_A mol:protein length:230 Catabolite activation-like protein
PfamA32U 37-159 -16.200 8  PF04831.13; T1HCS8_RHOPR/40-266; Popeye protein conserved region
46-136 -17.200 11  PF00027.29; Q695H0_CHLRE/446-536; Cyclic nucleotide-binding domain
165-232 -28.800 36  PF15977.5; A6TEJ1_KLEP7/139-207; Winged helix-turn-helix DNA binding
SCOP207 10-162 -27.500 14  d2z69a1 b.82.3.0 (A:1-150) automated matches {Pseudomonas aeruginosa [TaxId: 287]}
163-229 -18.900 17  d1zyba1 a.4.5.4 (A:148-220) Probable transcription regulator BT4300, C-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]}
VFDB 4-233 -15.200 8  [T] KOG1113 cAMP-dependent protein kinase types I and II, regulatory subunit
44-228 -33.800 12  [T] COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. Discovering new genes with advanced homology detection. Trends Biotechnol. 2002 Aug;20(8):315-6.