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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 14323next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 d1dlwa_ a.1.1.1 (A:) Protozoan/bacterial hemoglobin {Ciliate (Paramecium caudatum) [TaxId: 5885]} 116 PDB1018 1-116 -68.000 100  1dlw_A mol:protein length:116 HEMOGLOBIN
2 d2gkma_ a.1.1.1 (A:) Protozoan/bacterial hemoglobin {Mycobacterium tuberculosis, HbN [TaxId: 1773]} 127 PDB1018 1-127 -67.900 99  2gl3_A mol:protein length:136 Hemoglobin-like protein HbN
3 d1ngka_ a.1.1.1 (A:) Protozoan/bacterial hemoglobin {Mycobacterium tuberculosis, HbO [TaxId: 1773]} 126 PDB1018 1-126 -71.600 100  1ngk_A mol:protein length:128 Hemoglobin-like protein HbO
4 d2bkma_ a.1.1.1 (A:) automated matches {Geobacillus stearothermophilus [TaxId: 1422]} 128 PDB1018 1-128 -72.300 100  2bkm_A mol:protein length:128 TRUNCATED HEMOGLOBIN FROM GEOBACILLUS STEAROTHERMOPHILUS
5 d4i0va_ a.1.1.1 (A:) automated matches {Synechococcus sp. [TaxId: 32049]} 123 PDB1018 1-123 -71.400 100  2ksc_A mol:protein length:123 Cyanoglobin
6 d1asha_ a.1.1.2 (A:) Ascaris hemoglobin, domain 1 {Pig roundworm (Ascaris suum) [TaxId: 6253]} 147 PDB1018 1-147 -64.900 100  1ash_A mol:protein length:150 HEMOGLOBIN (OXY)
7 d2dc3a_ a.1.1.2 (A:) Cytoglobin {Human (Homo sapiens) [TaxId: 9606]} 172 PDB1018 2-172 -68.300 98  1umo_A mol:protein length:190 CYTOGLOBIN
8 d4hswa_ a.1.1.2 (A:) Dehaloperoxidase {Amphitrite ornata [TaxId: 129555]} 137 PDB1018 1-137 -61.800 100  4hsw_A mol:protein length:137 Dehaloperoxidase A
9 d1ecaa_ a.1.1.2 (A:) Erythrocruorin {Midge (Chironomus thummi thummi), fraction III [TaxId: 7154]} 136 PDB1018 1-136 -62.000 100  1eca_A mol:protein length:136 ERYTHROCRUORIN (AQUO MET)
10 d1x9fd_ a.1.1.2 (D:) Extracellular dodecameric hemoglobin (erythrocruorin), subunit D1 {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} 140 PDB1018 1-140 -65.600 100  1x9f_D mol:protein length:140 hemoglobin chain d1
11 d1x9fc_ a.1.1.2 (C:) Extracellular dodecameric hemoglobin (erythrocruorin), subunit III (globin C) {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} 149 PDB1018 1-149 -63.500 100  1x9f_C mol:protein length:153 Globin III, extracellular
12 d1jl7a_ a.1.1.2 (A:) Glycera globin {Marine bloodworm (Glycera dibranchiata) [TaxId: 6350]} 147 PDB1018 1-147 -73.000 100  1jf3_A mol:protein length:147 monomer hemoglobin component III
13 d1it2a_ a.1.1.2 (A:) Hagfish hemoglobin {Inshore hagfish (Eptatretus burgeri) [TaxId: 7764]} 146 PDB1018 1-146 -69.800 100  1it2_A mol:protein length:146 hemoglobin
14 d1or4a_ a.1.1.2 (A:) Heme-based aerotactic transducer HemAT, sensor domain {Bacillus subtilis [TaxId: 1423]} 169 PDB1018 1-169 -72.900 100  1or4_A mol:protein length:178 Heme-based aerotactic transducer hemAT
15 d1itha_ a.1.1.2 (A:) Hemoglobin {Innkeeper worm (Urechis caupo) [TaxId: 6431]} 141 PDB1018 1-141 -67.000 100  1ith_A mol:protein length:141 HEMOGLOBIN (CYANO MET)
16 d3g46a_ a.1.1.2 (A:) Hemoglobin I {Ark clam (Scapharca inaequivalvis) [TaxId: 6561]} 146 PDB1018 1-146 -67.200 99  3uhb_A mol:protein length:146 Globin-1
17 d1b0ba_ a.1.1.2 (A:) Hemoglobin I {Clam (Lucina pectinata) [TaxId: 244486]} 142 PDB1018 1-142 -67.000 100  1b0b_A mol:protein length:142 HEMOGLOBIN
18 d1gcva_ a.1.1.2 (A:) Hemoglobin, alpha-chain {Houndshark (Mustelus griseus) [TaxId: 89020]} 140 PDB1018 1-140 -71.100 100  1gcv_A mol:protein length:140 HEMOGLOBIN
19 d3d1kb_ a.1.1.2 (B:) Hemoglobin, beta-chain {Antarctic fish (Trematomus newnesi) [TaxId: 35730]} 146 PDB1018 1-146 -70.100 100  1la6_B mol:protein length:146 Hemoglobin beta-1/2 chain
20 d1cg5b_ a.1.1.2 (B:) Hemoglobin, beta-chain {Cartilaginous fish akaei (Dasyatis akajei) [TaxId: 31902]} 141 PDB1018 1-141 -67.700 100  1cg5_B mol:protein length:141 PROTEIN (HEMOGLOBIN)


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Rychlewski L, Zhang B, Godzik A. Fold predictions for bacterial genomes. J Struct Biol. 2001 May-Jun;134(2-3):219-31. Review.