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Filter & download results: Zscore <   Identity ≥(%)   Query residues aligned ≥(%)   Max number of homologs:   Template Database:

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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 21-40 of 14323< prev pagenext page >

# Query Length Result vs. Range Score %id Covered by template(s)
21 d1gcvb_ a.1.1.2 (B:) Hemoglobin, beta-chain {Houndshark (Mustelus griseus) [TaxId: 89020]} 136 PfamA32U 1-135 -11.300 13  PF11563.8; F0XJU9_GROCL/20-199; Protoglobin
7-101 -29.700 15  PF00042.22; GLB8_CHITH/9-115; Globin
22 d1hlba_ a.1.1.2 (A:) Hemoglobin, different isoforms {Caudina arenicola, also known as Molpadia arenicola [TaxId: 7698]} 157 PfamA32U 11-156 -15.000 10  PF11563.8; F0XJU9_GROCL/20-199; Protoglobin
16-122 -40.900 23  PF00042.22; GLB8_CHITH/9-115; Globin
23 d1tu9a1 a.1.1.2 (A:2-130) Hypothetical protein PA3967 {Pseudomonas aeruginosa [TaxId: 287]} 129 PfamA32U 2-96 -24.100 14  PF00042.22; GLB8_CHITH/9-115; Globin
8-127 -13.700 13  PF01152.21; Q7CX73_AGRFC/7-127; Bacterial-like globin
24 d1mbaa_ a.1.1.2 (A:) Myoglobin {Slug sea hare (Aplysia limacina) [TaxId: 6502]} 146 PfamA32U 1-145 -14.800 13  PF11563.8; F0XJU9_GROCL/20-199; Protoglobin
6-113 -43.500 29  PF00042.22; GLB8_CHITH/9-115; Globin
25 d1naza_ a.1.1.2 (A:) Myoglobin {Sperm whale (Physeter catodon) [TaxId: 9755]} 154 PfamA32U 1-153 -13.500 12  PF11563.8; F0XJU9_GROCL/20-199; Protoglobin
7-113 -35.700 20  PF00042.22; GLB8_CHITH/9-115; Globin
26 d1q1fa_ a.1.1.2 (A:) Neuroglobin {Mouse (Mus musculus) [TaxId: 10090]} 148 PfamA32U 1-146 -13.800 PF11563.8; F0XJU9_GROCL/20-199; Protoglobin
3-112 -39.700 16  PF00042.22; GLB8_CHITH/9-115; Globin
27 d1h97a_ a.1.1.2 (A:) Trematode hemoglobin/myoglobin {Paramphistomum epiclitum [TaxId: 54403]} 147 PfamA32U 1-147 -9.920 10  PF11563.8; F0XJU9_GROCL/20-199; Protoglobin
6-116 -41.600 13  PF00042.22; GLB8_CHITH/9-115; Globin
28 d2w72a_ a.1.1.2 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]} 141 PfamA32U 2-140 -11.400 12  PF11563.8; F0XJU9_GROCL/20-199; Protoglobin
6-106 -33.000 14  PF00042.22; GLB8_CHITH/9-115; Globin
29 d3qm9a_ a.1.1.2 (A:) automated matches {Thunnus atlanticus [TaxId: 48168]} 145 PfamA32U 1-143 -11.100 18  PF11563.8; F0XJU9_GROCL/20-199; Protoglobin
2-107 -39.700 23  PF00042.22; GLB8_CHITH/9-115; Globin
30 d3qqqa_ a.1.1.2 (A:) automated matches {Trema tomentosa [TaxId: 3480]} 151 PfamA32U 2-150 -14.400 PF11563.8; F0XJU9_GROCL/20-199; Protoglobin
6-115 -42.700 17  PF00042.22; GLB8_CHITH/9-115; Globin
31 d3l0fa_ a.1.1.3 (A:) Phycocyanin alpha subunit {Thermosynechococcus elongatus [TaxId: 197221]} 162 PfamA32U 7-161 -60.200 25  PF00502.19; APCD_SYNP2/6-160; Phycobilisome protein
32 d1b8da_ a.1.1.3 (A:) Phycoerythrin alpha subunit {Red alga (Griffithsia monilis) [TaxId: 42003]} 164 PfamA32U 7-163 -60.700 25  PF00502.19; APCD_SYNP2/6-160; Phycobilisome protein
33 d1xg0c_ a.1.1.3 (C:) Phycoerythrin beta subunit {Cryptophyte (Rhodomonas sp. CS24) [TaxId: 79257]} 175 PfamA32U 5-159 -62.200 26  PF00502.19; APCD_SYNP2/6-160; Phycobilisome protein
34 d4po5b_ a.1.1.3 (B:) automated matches {Synechocystis sp. [TaxId: 1111708]} 161 PfamA32U 7-160 -63.300 32  PF00502.19; APCD_SYNP2/6-160; Phycobilisome protein
35 d2xkia_ a.1.1.4 (A:) Nerve tissue mini-hemoglobin (neural globin) {Milky ribbon worm (Cerebratulus lacteus) [TaxId: 6221]} 110 PfamA32U 2-88 -35.500 35  PF00042.22; GLB8_CHITH/9-115; Globin
36 d2wy4a_ a.1.1.0 (A:) automated matches {Campylobacter jejuni [TaxId: 197]} 139 PfamA32U 1-139 -17.000 15  PF11563.8; F0XJU9_GROCL/20-199; Protoglobin
4-101 -33.200 16  PF00042.22; GLB8_CHITH/9-115; Globin
37 d2ig3a_ a.1.1.0 (A:) automated matches {Campylobacter jejuni [TaxId: 197]} 127 PfamA32U 1-119 -47.000 17  PF01152.21; Q7CX73_AGRFC/7-127; Bacterial-like globin
38 d3pt8a_ a.1.1.0 (A:) automated matches {Clam (Lucina pectinata) [TaxId: 244486]} 151 PfamA32U 2-151 -16.000 PF11563.8; F0XJU9_GROCL/20-199; Protoglobin
7-115 -42.700 24  PF00042.22; GLB8_CHITH/9-115; Globin
39 d2bk9a_ a.1.1.0 (A:) automated matches {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} 153 PfamA32U 1-152 -16.000 PF11563.8; F0XJU9_GROCL/20-199; Protoglobin
5-114 -45.500 26  PF00042.22; GLB8_CHITH/9-115; Globin
40 d2c0ka_ a.1.1.0 (A:) automated matches {Gasterophilus intestinalis [TaxId: 84525]} 150 PfamA32U 1-149 -14.400 12  PF11563.8; F0XJU9_GROCL/20-199; Protoglobin
5-115 -45.000 21  PF00042.22; GLB8_CHITH/9-115; Globin


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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Grynberg M, Jaroszewski L, Godzik A. Domain analysis of the tubulin cofactor system: a model for tubulin folding and dimerization. BMC Bioinformatics. 2003 Oct 10;4(1):46.