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Filter & download results: Zscore <   Identity ≥(%)   Query residues aligned ≥(%)   Max number of homologs:   Template Database:
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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 1872next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 TM0001 TM0001 281882 Purified-2001-08-24 41 SCOP207 9-39 -5.720 32  d1skza1 g.3.15.1 (A:7-58) Factor Xa inhibitor antistasin {Mexican leech (Haementeria officinalis) [TaxId: 6410]}
2 TM0002 TM0002 281883 Purified-2001-08-29 41 SCOP207 8-35 -6.420 32  d2j01s1 c.55.4.1 (S:23-108) Ribosomal protein L18 (L18p) {Thermus thermophilus [TaxId: 274]}
3 TM0003 TM0003 281884 Purified-2001-12-06 40 SCOP207 8-38 -5.250 34  d1m2oa2 b.2.8.1 (A:2-44,A:391-523) Sec23 {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
4 TM0004 TM0004 281885 Purified-2004-07-19 31 SCOP207 3-24 -3.500 18  d5ig0a_ d.17.4.0 (A:) automated matches {Salpingoeca rosetta [TaxId: 946362]}
5 TM0005 TM0005 281886 Purified-2001-01-30 650 SCOP207 2-442 -49.000 16  d4pj3a3 c.37.1.19 (A:416-492,A:662-1133) Pre-mRNA splicing factor Cwf11 / Aquarius {Human (Homo sapiens) [TaxId: 9606]}
92-447 -65.800 23  d2gk6a1 c.37.1.19 (A:295-324,A:416-702) Upf1 {Human (Homo sapiens) [TaxId: 9606]}
448-649 -72.200 35  d2gk6a3 c.37.1.19 (A:703-911) Upf1 {Human (Homo sapiens) [TaxId: 9606]}
6 TM0006 TM0006 281887 Diffraction|HSQC-2004-07-13 345 SCOP207 3-124 -51.100 100  d2zada1 d.54.1.0 (A:2-124) automated matches {Thermotoga maritima [TaxId: 243274]}
95-345 -55.200 17  d4g8ta2 c.1.11.2 (A:134-442) automated matches {Actinobacillus succinogenes [TaxId: 339671]}
125-345 -75.800 100  d2zada2 c.1.11.0 (A:125-345) automated matches {Thermotoga maritima [TaxId: 243274]}
7 TM0007 TM0007 281888 Purified-2004-07-19 438 SCOP207 104-366 -21.100 8  d1x3za_ d.3.1.4 (A:) automated matches {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
209-438 -13.900 14  d1rlla2 d.3.1.4 (A:141-461) Transglutaminase catalytic domain {Human (Homo sapiens), TGase E3 [TaxId: 9606]}
8 TM0008 TM0008 281889 Crystal|NMR-2001-04-01 224 SCOP207 1-224 -80.700 27  d3krva_ c.8.8.1 (A:) Unnamed protein {Bacillus stearothermophilus [TaxId: 1422]}
9 TM0009 TM0009 281890 Purified-2001-02-14 142 SCOP207 2-142 -57.400 31  d1vjxa1 a.25.1.1 (A:1-145) Hypothetical protein TM1526 {Thermotoga maritima [TaxId: 2336]}
10 TM0010 TM0010 281891 Purified-2005-03-03 607 SCOP207 4-97 -19.600 34  d5abra_ c.47.1.0 (A:) automated matches {Azotobacter vinelandii [TaxId: 354]}
110-350 -71.600 49  d3iam11 c.142.1.1 (1:2-249) automated matches {Thermus thermophilus HB8 [TaxId: 300852]}
351-434 -34.700 36  d3iam12 d.15.13.0 (1:250-333) automated matches {Thermus thermophilus HB8 [TaxId: 300852]}
435-535 -41.300 42  d3iam13 a.29.12.0 (1:334-438) automated matches {Thermus thermophilus HB8 [TaxId: 300852]}
518-596 -21.500 32  d1hfel2 d.58.1.5 (L:2-86) Fe-only hydrogenase larger subunit, N-domain {Desulfovibrio desulfuricans [TaxId: 876]}
11 TM0011 TM0011 281892 Purified-2004-02-02 128 SCOP207 2-117 -30.300 17  d3iam2_ c.47.1.21 (2:) automated matches {Thermus thermophilus HB8 [TaxId: 300852]}
33-125 -44.000 28  d1m2da_ c.47.1.11 (A:) Thioredoxin-like 2Fe-2S ferredoxin {Aquifex aeolicus [TaxId: 63363]}
12 TM0012 TM0012 281893 Purified-2001-08-29 176 SCOP207 17-175 -83.200 27  d3iam2_ c.47.1.21 (2:) automated matches {Thermus thermophilus HB8 [TaxId: 300852]}
13 TM0013 TM0013 281894 Purified-2001-08-24 253 SCOP207 1-243 -76.300 17  d2q9ua1 d.157.1.3 (A:4-253) Nitric oxide reductase N-terminal domain {Giardia intestinalis [TaxId: 5741]}
14 TM0014 TM0014 281895 Purified-2001-01-30 278 SCOP207 36-186 -8.620 13  d1qkra_ a.24.9.1 (A:) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}
15 TM0015 TM0015 281896 PDB-2007-09-14 192 SCOP207 6-192 -61.900 18  d2c42a4 c.64.1.1 (A:416-668) Pyruvate-ferredoxin oxidoreductase, PFOR, domain III {Desulfovibrio africanus [TaxId: 873]}
16 TM0016 TM0016 281897 Purified-2001-08-24 101 SCOP207 25-100 -33.600 32  d3iam9_ d.58.1.5 (9:) automated matches {Thermus thermophilus HB8 [TaxId: 300852]}
17 TM0017 TM0017 281898 Purified-2003-03-05 394 SCOP207 7-256 -70.900 28  d2c42a1 c.36.1.8 (A:2-258) Pyruvate-ferredoxin oxidoreductase, PFOR, domain I {Desulfovibrio africanus [TaxId: 873]}
257-394 -37.600 29  d2c42a3 c.48.1.3 (A:259-415) Pyruvate-ferredoxin oxidoreductase, PFOR, domain II {Desulfovibrio africanus [TaxId: 873]}
18 TM0018 TM0018 281899 Purified-2001-08-24 324 SCOP207 2-318 -67.600 26  d2c42a2 c.36.1.12 (A:786-1232) Pyruvate-ferredoxin oxidoreductase, PFOR, domains VI {Desulfovibrio africanus [TaxId: 873]}
19 TM0019 TM0019 281900 Crystal|NMR-2004-03-31 256 SCOP207 2-250 -96.200 31  d4gh5a_ c.2.1.0 (A:) automated matches {Xanthobacter autotrophicus [TaxId: 78245]}
20 TM0020 TM0020 281901 Purified-2001-08-24 127 SCOP207 3-106 -6.450 17  d5ee0a1 c.37.1.0 (A:16-303) automated matches {Oryza sativa [TaxId: 39947]}

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. Discovering new genes with advanced homology detection. Trends Biotechnol. 2002 Aug;20(8):315-6.