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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 21-40 of 1872< prev pagenext page >

# Query Length Result vs. Range Score %id Covered by template(s)
21 TM0021 TM0021 281902 PDB-2003-02-27 102 VFDB 1-102 -51.100 41  [S] COG1993 Uncharacterized conserved protein
22 TM0022 TM0022 281903 Purified-2006-07-20 516 VFDB 6-516 -133.000 30  [L] COG0323 DNA mismatch repair enzyme (predicted ATPase)
23 TM0023 TM0023 281904 Purified-2001-08-24 656 VFDB 1-348 -28.800 10  [T] COG2770 FOG: HAMP domain
298-656 -47.200 23  [NT] COG0840 Methyl-accepting chemotaxis protein
24 TM0024 TM0024 281905 Purified-2001-08-24 642 VFDB 196-472 -51.100 22  [G] COG2273 Beta-glucanase/Beta-glucan synthetase
25 TM0025 TM0025 281906 Purified-2001-01-30 721 VFDB 2-316 -37.000 17  [G] COG1472 Beta-glucosidase-related glycosidases
602-715 -9.760 14  [C] COG3241 Azurin
26 TM0026 TM0026 281907 Purified-2001-01-30 68 VFDB 5-67 -9.740 11  [S] COG4331 Predicted membrane protein
27 TM0027 TM0027 281908 Purified-2001-01-30 268 VFDB 2-267 -105.000 35  [V] COG4167 ABC-type antimicrobial peptide transport system, ATPase component
28 TM0028 TM0028 281909 Purified-2001-08-29 330 VFDB 3-330 -115.000 33  [EP] COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component
29 TM0029 TM0029 281910 Purified-2001-01-30 280 VFDB 1-278 -93.100 22  [V] COG4171 ABC-type antimicrobial peptide transport system, permease component
30 TM0030 TM0030 281911 Purified-2001-01-30 338 VFDB 6-335 -109.000 36  [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components
31 TM0031 TM0031 281912 Purified-2001-08-24 606 VFDB 1-540 -102.000 18  [E] COG0747 ABC-type dipeptide transport system, periplasmic component
32 TM0032 TM0032 281913 Purified-2005-03-03 381 VFDB 1-64 -13.800 12  [S] COG3388 Uncharacterized protein conserved in archaea
39-375 -72.900 17  [KG] COG1940 Transcriptional regulator/sugar kinase
33 TM0033 TM0033 281914 Purified-2001-08-24 395 VFDB 1-395 -90.000 26  [R] COG4099 Predicted peptidase
34 TM0034 TM0034 281915 Purified-2001-08-29 357 VFDB 1-353 -99.600 34  [R] COG2768 Uncharacterized Fe-S center protein
35 TM0035 TM0035 281916 Purified-2001-08-24 485 VFDB 1-258 -9.630 [O] KOG2661 Peptidase family M48
36 TM0036 TM0036 281917 Purified-2001-08-24 174 VFDB 1-171 -55.500 35  [F] COG1618 Predicted nucleotide kinase
37 TM0037 TM0037 281918 Purified-2001-08-24 416 VFDB 28-366 -12.600 13  [R] COG1418 Predicted HD superfamily hydrolase
91-395 -47.100 18  [KT] COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain
38 TM0038 TM0038 281919 Purified-2001-02-14 120 VFDB 6-119 -51.100 27  [H] COG0720 6-pyruvoyl-tetrahydropterin synthase
39 TM0039 TM0039 281920 Crystal|NMR-2008-01-13 259 VFDB 1-253 -106.000 40  [S] COG1469 Uncharacterized conserved protein
40 TM0040 TM0040 281921 Purified-2003-03-06 278 VFDB 14-275 -80.900 41  [H] KOG2544 Dihydropteroate synthase/7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase/Dihydroneopterin aldolase


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Reed JC, Doctor K, Rojas A, Zapata JM, Stehlik C, Fiorentino L, Damiano J, Roth W, Matsuzawa S, Newman R, Takayama S, Marusawa H, Xu F, Salvesen G, Godzik A.; RIKEN GER Group; GSL Members. Comparative analysis of apoptosis and inflammation genes of mice and humans. Genome Res. 2003 Jun;13(6B):1376-88.