FFAS03 list of results Y.pestis / HGM

Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 21-40 of 4332 < prev page next page >

# Query Length Result vs. Range Score %id Covered by template(s)
21 gi|16082718|ref|NP_395164.1| secretion chaperone (YPCD1.30c) [Yersinia pestis CO92] 168 HGM_OVER 1-91 -6.610 10 PB002794 gi|86143885|ref|ZP_01062253.1| hypothetical protein MED217_03525 [Flavobacterium sp. MED217]gi|85829592|gb|EAQ48055.1| hypothetical protein MED217_03525 [Leeuwenhoekiella blandensis MED217]
22 gi|16082719|ref|NP_395165.1| secreted effector protein (YPCD1.31c) [Yersinia pestis CO92] 326 HGM_OVER 119-321 -5.570 8 PB162020 _JGI.0344610_ 2004040329 [Human Gut Community Subject 8]
23 gi|16082720|ref|NP_395166.1| low calcium response protein G (YPCD1.32c) [Yersinia pestis CO92] 95 HGM_OVER 22-93 -3.750 9 PB014998 gi|86133284|ref|ZP_01051866.1| hypothetical protein MED152_01230 [Tenacibaculum sp. MED152]gi|85820147|gb|EAQ41294.1| hypothetical protein MED152_01230 [Polaribacter dokdonensis MED152]
24 gi|16082721|ref|NP_395167.1| low calcium response protein R (YPCD1.33c) [Yersinia pestis CO92] 146 HGM_OVER 40-105 -3.360 15 PB162020 _JGI.0344610_ 2004040329 [Human Gut Community Subject 8]
25 gi|16082722|ref|NP_395168.1| low calcium response protein D (YPCD1.34c) [Yersinia pestis CO92] 704 HGM_OVER 100-259 -4.230 15 HGC00690 gi|162868815|dbj|BABB01001192.1|3.0 TMP00870;
26 gi|16082723|ref|NP_395169.1| hypothetical protein (YPCD1.35c) [Yersinia pestis CO92] 114 HGM_OVER 4-72 -6.010 8 PB002794 gi|86143885|ref|ZP_01062253.1| hypothetical protein MED217_03525 [Flavobacterium sp. MED217]gi|85829592|gb|EAQ48055.1| hypothetical protein MED217_03525 [Leeuwenhoekiella blandensis MED217]
27 gi|16082724|ref|NP_395170.1| hypothetical protein (YPCD1.36c) [Yersinia pestis CO92] 122 HGM_OVER 40-109 -2.880 10 PB000795 Q74Z21_ASHGO/1-280 PB000795; Pfam-B_795;
28 gi|16082725|ref|NP_395171.1| hypothetical protein (YPCD1.37c) [Yersinia pestis CO92] 123 HGM_OVER 1-122 -5.460 8 PB002534 Q8H9W1_9CAUD/1-397 PB002534; Pfam-B_2534;
29 gi|16082726|ref|NP_395172.1| Yop secretion and targeting control protein (YPCD1.38c) [Yersinia pestis CO92] 92 HGM_OVER 8-84 -4.280 15 PB023890 Q7MUU3_PORGI/1-263 PB023890; Pfam-B_23890;
30 gi|16082727|ref|NP_395173.1| secretion control protein (YPCD1.39c) [Yersinia pestis CO92] 293 HGM_OVER 56-234 -3.970 8 HGC00962 gi|162759780|dbj|BAAZ01005693.1|3.0 TMP01305;
31 gi|16082728|ref|NP_395174.1| type III secretion system ATPase (YPCD1.40) [Yersinia pestis CO92] 439 HGM_OVER 140-434 -5.420 11 PB005684 gi|160884252|ref|ZP_02065255.1| hypothetical protein BACOVA_02230 [Bacteroides ovatus ATCC 8483]gi|156109991|gb|EDO11736.1| hypothetical protein BACOVA_02230 [Bacteroides ovatus ATCC 8483]
32 gi|16082729|ref|NP_395175.1| type III secretion apparatus component (YPCD1.41) [Yersinia pestis CO92] 154 HGM_OVER 49-146 -3.150 9 PB019278 gi|154508461|ref|ZP_02044103.1| hypothetical protein ACTODO_00960 [Actinomyces odontolyticus ATCC 17982]gi|153798095|gb|EDN80515.1| hypothetical protein ACTODO_00960 [Actinomyces odontolyticus ATCC 17982]
33 gi|16082730|ref|NP_395176.1| type III secretion apparatus component (YPCD1.42) [Yersinia pestis CO92] 455 HGM_OVER 19-93 -5.960 13 PB006791 A6TXD6_9CLOT/1-181 PB006791; Pfam-B_6791;
34 gi|16082731|ref|NP_395177.1| type III secretion system protein (YPCD1.43) [Yersinia pestis CO92] 307 HGM_OVER 153-300 -4.380 10 PB060121 Q64SA7_BACFR/1-251 PB060121; Pfam-B_60121;
35 gi|16082732|ref|NP_395178.1|(removed signalp:1-34) type III secretion system protein (YPCD1.44) [Yersinia pestis CO92] 183 HGM_OVER 135-182 -4.630 14 PB038151 Q8A4A5_BACTN/1-178 PB038151; Pfam-B_38151;
36 gi|16082733|ref|NP_395179.1|(removed signalp:1-28) needle complex export protein (YPCD1.45) [Yersinia pestis CO92] 60 HGM_OVER 4-38 -2.940 8 PB006154 _JGI.0331794_ 2004021056 [Human Gut Community Subject 7]
37 gi|16082734|ref|NP_395180.1| needle complex export protein (YPCD1.46) [Yersinia pestis CO92] 261 HGM_OVER 42-194 -4.420 11 PB004718 Q5LIA4_BACFN/1-189 PB004718; Pfam-B_4718;
38 gi|16082735|ref|NP_395181.1| needle complex export protein (YPCD1.47) [Yersinia pestis CO92] 354 HGM_OVER 221-341 -6.020 8 HGC00248 gi|162576253|dbj|BAAV01029229.1|2.0 TMP00024;
39 gi|16082736|ref|NP_395182.1|(removed signalp:1-23) needle complex outer membrane lipoprotein precursor (YPCD1.48) [Yersinia pestis CO92] 108 HGM_OVER 2-107 -3.000 6 PB144506 _Gut.Meta.Jp.0101058_ gi|162866171|dbj|BABB01003836.1||1 (- 121:946~0 complete)
40 gi|16082737|ref|NP_395183.1| transcriptional regulator (YPCD1.49) [Yersinia pestis CO92] 271 HGM_OVER 2-141 -7.890 11 PB037276 Q24TM0_DESHY/1-190 PB037276; Pfam-B_37276;

FFAS is supported by the NIH grant R01-GM087218-01

jobs submitted since Jan 1, 2011

Comments and questions to: webmaster

#	Query	Length	Result vs.	Range	Score	%id	Covered by template(s)
21	`gi\|16082718\|ref\|NP_395164.1\| secretion chaperone (YPCD1.30c) [Yersinia pestis CO92]`	`168`	`HGM_OVER`	`1-91`	`-6.610`	`10`	`PB002794 gi\|86143885\|ref\|ZP_01062253.1\| hypothetical protein MED217_03525 [Flavobacterium sp. MED217]gi\|85829592\|gb\|EAQ48055.1\| hypothetical protein MED217_03525 [Leeuwenhoekiella blandensis MED217]`
22	`gi\|16082719\|ref\|NP_395165.1\| secreted effector protein (YPCD1.31c) [Yersinia pestis CO92]`	`326`	`HGM_OVER`	`119-321`	`-5.570`	`8`	`PB162020 _JGI.0344610_ 2004040329 [Human Gut Community Subject 8]`
23	`gi\|16082720\|ref\|NP_395166.1\| low calcium response protein G (YPCD1.32c) [Yersinia pestis CO92]`	`95`	`HGM_OVER`	`22-93`	`-3.750`	`9`	`PB014998 gi\|86133284\|ref\|ZP_01051866.1\| hypothetical protein MED152_01230 [Tenacibaculum sp. MED152]gi\|85820147\|gb\|EAQ41294.1\| hypothetical protein MED152_01230 [Polaribacter dokdonensis MED152]`
24	`gi\|16082721\|ref\|NP_395167.1\| low calcium response protein R (YPCD1.33c) [Yersinia pestis CO92]`	`146`	`HGM_OVER`	`40-105`	`-3.360`	`15`	`PB162020 _JGI.0344610_ 2004040329 [Human Gut Community Subject 8]`
25	`gi\|16082722\|ref\|NP_395168.1\| low calcium response protein D (YPCD1.34c) [Yersinia pestis CO92]`	`704`	`HGM_OVER`	`100-259`	`-4.230`	`15`	`HGC00690 gi\|162868815\|dbj\|BABB01001192.1\|3.0 TMP00870;`
26	`gi\|16082723\|ref\|NP_395169.1\| hypothetical protein (YPCD1.35c) [Yersinia pestis CO92]`	`114`	`HGM_OVER`	`4-72`	`-6.010`	`8`	`PB002794 gi\|86143885\|ref\|ZP_01062253.1\| hypothetical protein MED217_03525 [Flavobacterium sp. MED217]gi\|85829592\|gb\|EAQ48055.1\| hypothetical protein MED217_03525 [Leeuwenhoekiella blandensis MED217]`
27	`gi\|16082724\|ref\|NP_395170.1\| hypothetical protein (YPCD1.36c) [Yersinia pestis CO92]`	`122`	`HGM_OVER`	`40-109`	`-2.880`	`10`	`PB000795 Q74Z21_ASHGO/1-280 PB000795; Pfam-B_795;`
28	`gi\|16082725\|ref\|NP_395171.1\| hypothetical protein (YPCD1.37c) [Yersinia pestis CO92]`	`123`	`HGM_OVER`	`1-122`	`-5.460`	`8`	`PB002534 Q8H9W1_9CAUD/1-397 PB002534; Pfam-B_2534;`
29	`gi\|16082726\|ref\|NP_395172.1\| Yop secretion and targeting control protein (YPCD1.38c) [Yersinia pestis CO92]`	`92`	`HGM_OVER`	`8-84`	`-4.280`	`15`	`PB023890 Q7MUU3_PORGI/1-263 PB023890; Pfam-B_23890;`
30	`gi\|16082727\|ref\|NP_395173.1\| secretion control protein (YPCD1.39c) [Yersinia pestis CO92]`	`293`	`HGM_OVER`	`56-234`	`-3.970`	`8`	`HGC00962 gi\|162759780\|dbj\|BAAZ01005693.1\|3.0 TMP01305;`
31	`gi\|16082728\|ref\|NP_395174.1\| type III secretion system ATPase (YPCD1.40) [Yersinia pestis CO92]`	`439`	`HGM_OVER`	`140-434`	`-5.420`	`11`	`PB005684 gi\|160884252\|ref\|ZP_02065255.1\| hypothetical protein BACOVA_02230 [Bacteroides ovatus ATCC 8483]gi\|156109991\|gb\|EDO11736.1\| hypothetical protein BACOVA_02230 [Bacteroides ovatus ATCC 8483]`
32	`gi\|16082729\|ref\|NP_395175.1\| type III secretion apparatus component (YPCD1.41) [Yersinia pestis CO92]`	`154`	`HGM_OVER`	`49-146`	`-3.150`	`9`	`PB019278 gi\|154508461\|ref\|ZP_02044103.1\| hypothetical protein ACTODO_00960 [Actinomyces odontolyticus ATCC 17982]gi\|153798095\|gb\|EDN80515.1\| hypothetical protein ACTODO_00960 [Actinomyces odontolyticus ATCC 17982]`
33	`gi\|16082730\|ref\|NP_395176.1\| type III secretion apparatus component (YPCD1.42) [Yersinia pestis CO92]`	`455`	`HGM_OVER`	`19-93`	`-5.960`	`13`	`PB006791 A6TXD6_9CLOT/1-181 PB006791; Pfam-B_6791;`
34	`gi\|16082731\|ref\|NP_395177.1\| type III secretion system protein (YPCD1.43) [Yersinia pestis CO92]`	`307`	`HGM_OVER`	`153-300`	`-4.380`	`10`	`PB060121 Q64SA7_BACFR/1-251 PB060121; Pfam-B_60121;`
35	`gi\|16082732\|ref\|NP_395178.1\|(removed signalp:1-34) type III secretion system protein (YPCD1.44) [Yersinia pestis CO92]`	`183`	`HGM_OVER`	`135-182`	`-4.630`	`14`	`PB038151 Q8A4A5_BACTN/1-178 PB038151; Pfam-B_38151;`
36	`gi\|16082733\|ref\|NP_395179.1\|(removed signalp:1-28) needle complex export protein (YPCD1.45) [Yersinia pestis CO92]`	`60`	`HGM_OVER`	`4-38`	`-2.940`	`8`	`PB006154 _JGI.0331794_ 2004021056 [Human Gut Community Subject 7]`
37	`gi\|16082734\|ref\|NP_395180.1\| needle complex export protein (YPCD1.46) [Yersinia pestis CO92]`	`261`	`HGM_OVER`	`42-194`	`-4.420`	`11`	`PB004718 Q5LIA4_BACFN/1-189 PB004718; Pfam-B_4718;`
38	`gi\|16082735\|ref\|NP_395181.1\| needle complex export protein (YPCD1.47) [Yersinia pestis CO92]`	`354`	`HGM_OVER`	`221-341`	`-6.020`	`8`	`HGC00248 gi\|162576253\|dbj\|BAAV01029229.1\|2.0 TMP00024;`
39	`gi\|16082736\|ref\|NP_395182.1\|(removed signalp:1-23) needle complex outer membrane lipoprotein precursor (YPCD1.48) [Yersinia pestis CO92]`	`108`	`HGM_OVER`	`2-107`	`-3.000`	`6`	`PB144506 _Gut.Meta.Jp.0101058_ gi\|162866171\|dbj\|BABB01003836.1\|\|1 (- 121:946~0 complete)`
40	`gi\|16082737\|ref\|NP_395183.1\| transcriptional regulator (YPCD1.49) [Yersinia pestis CO92]`	`271`	`HGM_OVER`	`2-141`	`-7.890`	`11`	`PB037276 Q24TM0_DESHY/1-190 PB037276; Pfam-B_37276;`