FFAS03 list of results Y.pestis / VFDB

Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 4334 next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|16082692|ref|NP_395138.1| putative transposase (YPCD1.01) [Yersinia pestis CO92] 340 VFDB 1-340 -123.000 41 [L] COG4584 Transposase and inactivated derivatives
2 gi|16082693|ref|NP_395139.1| transposase/IS protein (YPCD1.02) [Yersinia pestis CO92] 259 VFDB 16-205 -11.300 12 [R] COG2607 Predicted ATPase (AAA+ superfamily)
54-252 -30.700 19 [L] COG1484 DNA replication protein
3 gi|16082696|ref|NP_395142.1| secretion chaperone (YPCD1.05c) [Yersinia pestis CO92] 130 VFDB 6-130 -11.600 8 [S] COG5465 Uncharacterized conserved protein
4 gi|16082697|ref|NP_395143.1| putative outer membrane virulence protein (YPCD1.06) [Yersinia pestis CO92] 219 VFDB 126-217 -6.600 8 [S] COG4718 Phage-related protein
5 gi|16082698|ref|NP_395144.1| hypothetical protein (YPCD1.07) [Yersinia pestis CO92] 98 VFDB 47-86 -7.170 17 [S] COG3771 Predicted membrane protein
6 gi|16082699|ref|NP_395145.1| hypothetical protein (YPCD1.08c) [Yersinia pestis CO92] 99 VFDB 2-94 -62.000 31 [R] COG3668 Plasmid stabilization system protein
7 gi|40548796|ref|NP_395146.2| hypothetical protein (YPCD1.09c) [Yersinia pestis CO92] 80 VFDB 1-79 -33.100 29 [K] COG3609 Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain
8 gi|16082702|ref|NP_395148.1| plasmid-partitioning protein (YPCD1.12c) [Yersinia pestis CO92] 320 VFDB 2-156 -22.500 8 [L] KOG3388 Predicted transcription regulator/nuclease, contains ParB domain
76-320 -39.500 10 [K] COG1475 Predicted transcriptional regulators
9 gi|16082703|ref|NP_395149.1| plasmid-partitioning protein SopA (YPCD1.13c) [Yersinia pestis CO92] 388 VFDB 64-387 -28.300 16 [D] COG0455 ATPases involved in chromosome partitioning
105-374 -64.500 19 [D] COG1192 ATPases involved in chromosome partitioning
10 gi|40548797|ref|NP_954989.1| hypothetical protein (YPCD1.14n) [Yersinia pestis CO92] 65 VFDB 1-64 -26.300 21 [L] COG2801 Transposase and inactivated derivatives
11 gi|16082705|ref|NP_395151.1| hypothetical protein (YPCD1.15c) [Yersinia pestis CO92] 152 VFDB 1-152 -42.500 15 [L] COG2801 Transposase and inactivated derivatives
12 gi|16082706|ref|NP_395152.1| hypothetical protein (YPCD1.16c) [Yersinia pestis CO92] 107 VFDB 6-107 -46.000 27 [L] COG2963 Transposase and inactivated derivatives
13 gi|16082708|ref|NP_395154.1| Yop targeting protein (YPCD1.19c) [Yersinia pestis CO92] 182 VFDB 31-148 -9.900 15 [R] COG3271 Predicted double-glycine peptidase
14 gi|16082709|ref|NP_395155.1| Yop targeted effector (YPCD1.20) [Yersinia pestis CO92] 322 VFDB 1-321 -8.450 7 [S] KOG4621 Uncharacterized conserved protein
15 gi|16082710|ref|NP_395156.1| YopT chaperone (YPCD1.21) [Yersinia pestis CO92] 132 VFDB 7-131 -6.490 7 [S] COG5465 Uncharacterized conserved protein
16 gi|16082711|ref|NP_395157.1| hypothetical protein (YPCD1.22c) [Yersinia pestis CO92] 129 VFDB 1-120 -6.660 19 [T] KOG1882 Transcriptional regulator SNIP1, contains FHA domain
17 gi|16082712|ref|NP_395158.1| hypothetical protein (YPCD1.23) [Yersinia pestis CO92] 139 VFDB 14-91 -8.600 19 [A] KOG0106 Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily)
18 gi|16082715|ref|NP_395161.1| secreted effector protein (YPCD1.26c) [Yersinia pestis CO92] 409 VFDB 9-409 -43.800 17 [T] KOG4641 FOG: Toll/interleukin receptor and related proteins containing LRR and TIR repeats
19 gi|16082716|ref|NP_395162.1| secreted effector protein (YPCD1.28c) [Yersinia pestis CO92] 306 VFDB 83-304 -11.500 11 [S] COG5613 Uncharacterized conserved protein
20 gi|16082717|ref|NP_395163.1| secreted effector protein (YPCD1.29c) [Yersinia pestis CO92] 401 VFDB 1-401 -112.000 100 [S] COG5613 Uncharacterized conserved protein

FFAS is supported by the NIH grant R01-GM087218-01

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#	Query	Length	Result vs.	Range	Score	%id	Covered by template(s)
1	`gi\|16082692\|ref\|NP_395138.1\| putative transposase (YPCD1.01) [Yersinia pestis CO92]`	`340`	`VFDB`	`1-340`	`-123.000`	`41`	`[L] COG4584 Transposase and inactivated derivatives`
2	`gi\|16082693\|ref\|NP_395139.1\| transposase/IS protein (YPCD1.02) [Yersinia pestis CO92]`	`259`	`VFDB`	`16-205`	`-11.300`	`12`	`[R] COG2607 Predicted ATPase (AAA+ superfamily)`
				`54-252`	`-30.700`	`19`	`[L] COG1484 DNA replication protein`
3	`gi\|16082696\|ref\|NP_395142.1\| secretion chaperone (YPCD1.05c) [Yersinia pestis CO92]`	`130`	`VFDB`	`6-130`	`-11.600`	`8`	`[S] COG5465 Uncharacterized conserved protein`
4	`gi\|16082697\|ref\|NP_395143.1\| putative outer membrane virulence protein (YPCD1.06) [Yersinia pestis CO92]`	`219`	`VFDB`	`126-217`	`-6.600`	`8`	`[S] COG4718 Phage-related protein`
5	`gi\|16082698\|ref\|NP_395144.1\| hypothetical protein (YPCD1.07) [Yersinia pestis CO92]`	`98`	`VFDB`	`47-86`	`-7.170`	`17`	`[S] COG3771 Predicted membrane protein`
6	`gi\|16082699\|ref\|NP_395145.1\| hypothetical protein (YPCD1.08c) [Yersinia pestis CO92]`	`99`	`VFDB`	`2-94`	`-62.000`	`31`	`[R] COG3668 Plasmid stabilization system protein`
7	`gi\|40548796\|ref\|NP_395146.2\| hypothetical protein (YPCD1.09c) [Yersinia pestis CO92]`	`80`	`VFDB`	`1-79`	`-33.100`	`29`	`[K] COG3609 Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain`
8	`gi\|16082702\|ref\|NP_395148.1\| plasmid-partitioning protein (YPCD1.12c) [Yersinia pestis CO92]`	`320`	`VFDB`	`2-156`	`-22.500`	`8`	`[L] KOG3388 Predicted transcription regulator/nuclease, contains ParB domain`
				`76-320`	`-39.500`	`10`	`[K] COG1475 Predicted transcriptional regulators`
9	`gi\|16082703\|ref\|NP_395149.1\| plasmid-partitioning protein SopA (YPCD1.13c) [Yersinia pestis CO92]`	`388`	`VFDB`	`64-387`	`-28.300`	`16`	`[D] COG0455 ATPases involved in chromosome partitioning`
				`105-374`	`-64.500`	`19`	`[D] COG1192 ATPases involved in chromosome partitioning`
10	`gi\|40548797\|ref\|NP_954989.1\| hypothetical protein (YPCD1.14n) [Yersinia pestis CO92]`	`65`	`VFDB`	`1-64`	`-26.300`	`21`	`[L] COG2801 Transposase and inactivated derivatives`
11	`gi\|16082705\|ref\|NP_395151.1\| hypothetical protein (YPCD1.15c) [Yersinia pestis CO92]`	`152`	`VFDB`	`1-152`	`-42.500`	`15`	`[L] COG2801 Transposase and inactivated derivatives`
12	`gi\|16082706\|ref\|NP_395152.1\| hypothetical protein (YPCD1.16c) [Yersinia pestis CO92]`	`107`	`VFDB`	`6-107`	`-46.000`	`27`	`[L] COG2963 Transposase and inactivated derivatives`
13	`gi\|16082708\|ref\|NP_395154.1\| Yop targeting protein (YPCD1.19c) [Yersinia pestis CO92]`	`182`	`VFDB`	`31-148`	`-9.900`	`15`	`[R] COG3271 Predicted double-glycine peptidase`
14	`gi\|16082709\|ref\|NP_395155.1\| Yop targeted effector (YPCD1.20) [Yersinia pestis CO92]`	`322`	`VFDB`	`1-321`	`-8.450`	`7`	`[S] KOG4621 Uncharacterized conserved protein`
15	`gi\|16082710\|ref\|NP_395156.1\| YopT chaperone (YPCD1.21) [Yersinia pestis CO92]`	`132`	`VFDB`	`7-131`	`-6.490`	`7`	`[S] COG5465 Uncharacterized conserved protein`
16	`gi\|16082711\|ref\|NP_395157.1\| hypothetical protein (YPCD1.22c) [Yersinia pestis CO92]`	`129`	`VFDB`	`1-120`	`-6.660`	`19`	`[T] KOG1882 Transcriptional regulator SNIP1, contains FHA domain`
17	`gi\|16082712\|ref\|NP_395158.1\| hypothetical protein (YPCD1.23) [Yersinia pestis CO92]`	`139`	`VFDB`	`14-91`	`-8.600`	`19`	`[A] KOG0106 Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily)`
18	`gi\|16082715\|ref\|NP_395161.1\| secreted effector protein (YPCD1.26c) [Yersinia pestis CO92]`	`409`	`VFDB`	`9-409`	`-43.800`	`17`	`[T] KOG4641 FOG: Toll/interleukin receptor and related proteins containing LRR and TIR repeats`
19	`gi\|16082716\|ref\|NP_395162.1\| secreted effector protein (YPCD1.28c) [Yersinia pestis CO92]`	`306`	`VFDB`	`83-304`	`-11.500`	`11`	`[S] COG5613 Uncharacterized conserved protein`
20	`gi\|16082717\|ref\|NP_395163.1\| secreted effector protein (YPCD1.29c) [Yersinia pestis CO92]`	`401`	`VFDB`	`1-401`	`-112.000`	`100`	`[S] COG5613 Uncharacterized conserved protein`