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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 689next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|13507740|ref|NP_109689.1| DNA polymerase III beta subunit MPN001 [Mycoplasma pneumoniae M129] 380 PfamA32U 1-120 -43.300 20  PF00712.19; DPO3B_CAUVC/1-121; DNA polymerase III beta subunit, N-terminal domain
135-256 -39.800 12  PF02767.16; DPO3B_PSEPK/129-244; DNA polymerase III beta subunit, central domain
258-380 -52.100 23  PF02768.15; DPO3B_BACSU/253-376; DNA polymerase III beta subunit, C-terminal domain
2 gi|13507741|ref|NP_109690.1| DnaJ domain-containing protein MPN002 [Mycoplasma pneumoniae M129] 309 PfamA32U 2-61 -37.100 43  PF00226.31; Q22028_CAEEL/17-79; DnaJ domain
120-309 -54.200 12  PF01556.18; T0NBZ6_9EURY/129-343; DnaJ C terminal domain
3 gi|13507742|ref|NP_109691.1| DNA gyrase subunit B MPN003 [Mycoplasma pneumoniae M129] 650 PfamA32U 39-143 -13.900 21  PF13589.6; A5G4D8_GEOUR/22-165; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
228-408 -57.900 40  PF00204.25; A9KS52_LACP7/226-396; DNA gyrase B
546-645 -30.300 17  PF16898.5; K5XBZ3_PHACS/641-767; C-terminal associated domain of TOPRIM
577-639 -31.600 63  PF00986.21; M9X0E0_MANHA/738-800; DNA gyrase B subunit, carboxyl terminus
4 gi|13507743|ref|NP_109692.1| DNA gyrase subunit A MPN004 [Mycoplasma pneumoniae M129] 839 PfamA32U 44-471 -62.700 20  PF00521.20; A0A0D1DXS4_USTMA/785-1232; DNA gyrase/topoisomerase IV, subunit A
5 gi|13507744|ref|NP_109693.1| seryl-tRNA synthetase MPN005 [Mycoplasma pneumoniae M129] 420 PfamA32U 1-104 -28.200 22  PF02403.22; C5WTV8_SORBI/1-114; Seryl-tRNA synthetase N-terminal domain
212-394 -13.700 14  PF00587.25; SYT_ECOLI/318-529; tRNA synthetase class II core domain (G, H, P, S and T)
6 gi|13507745|ref|NP_109694.1| thymidylate kinase MPN006 [Mycoplasma pneumoniae M129] 210 PfamA32U 9-197 -84.600 35  PF02223.17; KTHY_BACSU/8-199; Thymidylate kinase
7 gi|13507746|ref|NP_109695.1| DNA polymerase III subunit delta' MPN007 [Mycoplasma pneumoniae M129] 253 PfamA32U 1-223 -11.200 9  PF04665.12; Q6TUP8_YMTV5/6-246; Poxvirus A32 protein
2-142 -73.300 27  PF13177.6; A5VIC8_LACRD/13-171; DNA polymerase III, delta subunit
2-189 -23.200 7  PF05673.13; Q0K6N5_CUPNH/29-287; Protein of unknown function (DUF815 topsan)
8 gi|13507747|ref|NP_109696.1| tRNA modification GTPase TrmE MPN008 [Mycoplasma pneumoniae M129] 442 PfamA32U 6-121 -56.800 40  PF10396.9; A4CKF7_ROBBH/5-124; GTP-binding protein TrmE N-terminus
124-439 -82.100 27  PF12631.7; D5XDU4_THEPJ/127-455; MnmE helical domain
9 gi|13507748|ref|NP_109697.1| hydrolase MPN009 [Mycoplasma pneumoniae M129] 261 PfamA32U 4-260 -104.000 29  PF01026.21; Y454_HAEIN/4-256; TatD related DNase
10 gi|13507749|ref|NP_109698.1| hypothetical protein MPN010 [Mycoplasma pneumoniae M129] 131 PfamA32U 37-130 -38.000 43  PF01519.16; Y137_MYCPN/43-170; Protein of unknown function DUF16 topsan
11 gi|13507750|ref|NP_109699.1|(removed signal:1-26) hypothetical protein MPN011 [Mycoplasma pneumoniae M129] 205 PfamA32U 16-82 -29.000 32  PF00938.17; Y643_MYCPN/57-141; Lipoprotein
12 gi|13507751|ref|NP_109700.1|(removed signal:1-21) hypothetical protein MPN012 [Mycoplasma pneumoniae M129] 214 PfamA32U 2-65 -14.300 35  PF00938.17; Y643_MYCPN/57-141; Lipoprotein
13 gi|13507752|ref|NP_109701.1| hypothetical protein MPN013 [Mycoplasma pneumoniae M129] 257 PfamA32U 27-123 -35.800 12  PF17352.2; C5XFS2_SORBI/33-141; Male Flower Specific protein 18
120-256 -13.200 27  PF01519.16; Y137_MYCPN/43-170; Protein of unknown function DUF16 topsan
14 gi|13507753|ref|NP_109702.1| hypothetical protein MPN014 [Mycoplasma pneumoniae M129] 212 PfamA32U 2-101 -46.800 15  PF08275.11; Q8F416_LEPIN/119-248; DNA primase catalytic core, N-terminal domain
108-195 -43.900 27  PF13155.6; Q8EPY5_OCEIH/263-348; Toprim-like
15 gi|13507754|ref|NP_109703.1| hypothetical protein MPN015 [Mycoplasma pneumoniae M129] 285 PfamA32U 9-89 -15.700 8  PF18030.1; D3SB52_THISK/1-94; RimK PreATP-grasp domain
92-271 -67.800 17  PF08443.11; RIMK_HAEIN/105-293; RimK-like ATP-grasp domain
16 gi|13507755|ref|NP_109704.1| ribosomal S6 modification protein MPN016 [Mycoplasma pneumoniae M129] 288 PfamA32U 1-87 -15.600 21  PF18030.1; D3SB52_THISK/1-94; RimK PreATP-grasp domain
90-287 -66.400 24  PF08443.11; RIMK_HAEIN/105-293; RimK-like ATP-grasp domain
17 gi|13507756|ref|NP_109705.1| 5,10-methylene-tetrahydrofolate dehydrogenase MPN017 [Mycoplasma pneumoniae M129] 269 PfamA32U 2-111 -49.700 32  PF00763.23; FOLD_BACSK/6-121; Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
121-264 -67.900 27  PF02882.19; FOLD1_ARATH/184-349; Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain
18 gi|13507757|ref|NP_109706.1|(removed signal:1-25) transport ATP-binding protein MPN018 [Mycoplasma pneumoniae M129] 598 PfamA32U 14-296 -11.000 15  PF00664.23; ABCC8_CRICR/318-590; ABC transporter transmembrane region
306-577 -18.900 12  PF09818.9; Q10V01_TRIEI/4-493; Predicted ATPase of the ABC class
358-517 -29.200 24  PF00005.27; YTFR_ECOLI/25-174; ABC transporter
19 gi|13507758|ref|NP_109707.1| transport ATP-binding protein MPN019 [Mycoplasma pneumoniae M129] 634 PfamA32U 54-352 -10.900 16  PF00664.23; ABCC8_CRICR/318-590; ABC transporter transmembrane region
354-622 -20.000 12  PF09818.9; Q10V01_TRIEI/4-493; Predicted ATPase of the ABC class
413-562 -29.100 29  PF00005.27; YTFR_ECOLI/25-174; ABC transporter
20 gi|13507759|ref|NP_109708.1| helicases MPN020 [Mycoplasma pneumoniae M129] 1030 PfamA32U 198-571 -14.300 9  PF08455.10; R4KHE0_9FIRM/244-621; Bacterial SNF2 helicase associated
581-854 -48.800 29  PF00176.23; RAD54_SCHPO/267-575; SNF2 family N-terminal domain
826-1030 -31.700 15  PF16203.5; Q0UAJ3_PHANO/498-753; ERCC3/RAD25/XPB C-terminal helicase

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Bourne PE, Allerston CK, Krebs W, Li W, Shindyalov IN, Godzik A.,Friedberg I, Liu T, Wild D, Hwang S, Ghahramani Z, Chen L, Westbrook J. The status of structural genomics defined through the analysis of current targets and structures. Pac Symp Biocomput. 2004;:375-86.