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Results: 1-20 of 17691next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 PF10417.9; A4AVJ3_MARSH/157-196; C-terminal domain of 1-Cys peroxiredoxin 40 COG1018 1-40 -13.300 32  [O] KOG0852 Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes
CSGID 1-40 -19.900 40  IDP92083 peroxidoxin 2 [Toxoplasma gondii ME49] TGME49_109210 [Toxoplasma gondii ME49]
H.sapiens 1-40 -20.000 55  sp|P30041|PRDX6_HUMAN Peroxiredoxin-6 OS=Homo sapiens GN=PRDX6 PE=1 SV=3
HGM_OVER 3-35 -1.840 12  HGC00915 gi|162810474|dbj|BABA01034235.1|2.0 TMP01234;
NEW_HUMAN_DOMAINS 10-36 -8.720 22  sp|P08F94|PKHD1_HUMAN Fibrocystin OS=Homo sapiens GN=PKHD1 PE=1 SV=1
PDB1018 1-39 -19.300 48  2v2g_A mol:protein length:233 PEROXIREDOXIN 6
PfamA32U 10-40 -5.240 19  PF12602.8; Q326X0_SHIDS/1-62; Fertility inhibition protein N terminal
SCOP207 1-39 -19.000 48  d2v2ga_ c.47.1.10 (A:) automated matches {Arenicola marina [TaxId: 6344]}
VFDB 1-40 -13.300 32  [O] KOG0852 Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes
2 PF12574.8; A0A0F3MK43_9RICK/404-636; 120 KDa Rickettsia surface antigen 233 COG1018 104-233 -7.550 15  [H] COG0307 Riboflavin synthase alpha chain
CSGID 104-233 -7.490 14  IDP04105 gene: ribC; riboflavin synthase alpha chain [Yersinia pestis CO92] YPO2391 [Yersinia pestis CO92]
H.sapiens 103-205 -8.100 27  sp|Q9BZA8|PC11Y_HUMAN(removed signalp:1-28) Protocadherin-11 Y-linked OS=Homo sapiens GN=PCDH11Y PE=1 SV=1
HGM_OVER 33-222 -4.950 13  PB047496 gi|150008556|ref|YP_001303299.1| hypothetical protein BDI_1942 [Parabacteroides distasonis ATCC 8503]gi|149936980|gb|ABR43677.1| conserved hypothetical protein [Parabacteroides distasonis ATCC 8503]
NEW_HUMAN_DOMAINS 102-215 -6.640 6  sp|O15230|LAMA5_HUMAN Laminin subunit alpha-5 OS=Homo sapiens GN=LAMA5 PE=1 SV=8
PDB1018 1-230 -70.900 26  4lq8_A mol:protein length:340 Sca-family protein
PfamA32U 90-206 -6.780 13  PF15283.6; D3IEK1_9BACT/56-257; Domain of unknown function (DUF4595 topsan) with porin-like fold
SCOP207 115-232 -7.220 15  d4jxua_ e.17.1.0 (A:) automated matches {Sinorhizobium meliloti [TaxId: 266834]}
VFDB 104-233 -7.550 15  [H] COG0307 Riboflavin synthase alpha chain
3 PF09847.9; O29125_ARCFU/30-435; Membrane protein of 12 TMs 406 COG1018 1-406 -142.000 100  [R] COG3368 Predicted permease
CSGID 215-404 -6.110 11  IDP00408 gene: ccmB; heme exporter protein B YPO2735 [Yersinia pestis CO92]
H.sapiens 202-401 -6.530 9  sp|Q8IYB8|SUV3_HUMAN(removed signalp:1-18) ATP-dependent RNA helicase SUPV3L1, mitochondrial OS=Homo sapiens GN=SUPV3L1 PE=1 SV=1
HGM_OVER 189-286 -3.210 9  PB008694 Q9F6U1_BACTN/1-190 PB008694; Pfam-B_8694;
NEW_HUMAN_DOMAINS 375-404 -5.300 23  sp|Q9Y2G1|MRF_HUMAN Myelin gene regulatory factor OS=Homo sapiens GN=MRF PE=1 SV=3
PDB1018 371-406 -6.930 25  5xj0_Y mol:protein length:54 gp76
PfamA32U 16-404 -12.100 14  PF16949.5; B4D3C0_9BACT/40-578; Putative ATP-binding cassette
SCOP207 351-406 -4.430 21  d1zx3a1 a.43.1.6 (A:10-95) Hypothetical protein NE0241 {Nitrosomonas europaea [TaxId: 915]}
VFDB 1-406 -142.000 100  [R] COG3368 Predicted permease
4 PF00244.20; G1K9B0_ANOCA/9-229; 14-3-3 protein 221 COG1018 2-221 -92.100 81  [O] KOG0841 Multifunctional chaperone (14-3-3 family)
CSGID 1-215 -8.210 14  IDP91388 TPR repeat-containing protein [Vibrio vulnificus CMCP6] VV1_1438 [Vibrio vulnificus CMCP6]
H.sapiens 2-221 -92.800 96  sp|P27348|1433T_HUMAN 14-3-3 protein theta OS=Homo sapiens GN=YWHAQ PE=1 SV=1
HGM_OVER 142-211 -3.110 11  PB000795 Q74Z21_ASHGO/1-280 PB000795; Pfam-B_795;
NEW_HUMAN_DOMAINS 2-220 -6.050 10  sp|Q12769|NU160_HUMAN Nuclear pore complex protein Nup160 OS=Homo sapiens GN=NUP160 PE=1 SV=3
PDB1018 2-221 -93.500 96  2btp_A mol:protein length:256 14-3-3 PROTEIN TAU
PfamA32U 88-185 -8.810 20  PF04781.12; B3H4B1_ARATH/23-139; Protein of unknown function (DUF627 topsan)
SCOP207 2-221 -93.800 72  d3mhra1 a.118.7.1 (A:1-231) automated matches {Human (Homo sapiens) [TaxId: 9606]}
VFDB 2-221 -92.100 81  [O] KOG0841 Multifunctional chaperone (14-3-3 family)
5 PF16998.5; B9JAN2_AGRRK/36-151; 17 kDa outer membrane surface antigen 116 COG1018 2-111 -41.600 21  [M] COG4520 Surface antigen
CSGID 5-103 -6.950 10  IDP04641 gene: mutM; formamidopyrimidine-DNA glycosylase [Francisella tularensis subsp. tularensis SCHU S4] FTT0693c [Francisella tularensis subsp. tularensis SCHU S4]
H.sapiens 56-108 -8.310 11  sp|Q96FE7|P3IP1_HUMAN(removed signalp:1-21) Phosphoinositide-3-kinase-interacting protein 1 OS=Homo sapiens GN=PIK3IP1 PE=1 SV=2
HGM_OVER 36-115 -5.870 12  PB008694 Q9F6U1_BACTN/1-190 PB008694; Pfam-B_8694;
NEW_HUMAN_DOMAINS 14-105 -5.910 7  sp|O14525|ASTN1_HUMAN Astrotactin-1 OS=Homo sapiens GN=ASTN1 PE=1 SV=3
PDB1018 2-109 -8.990 13  1u34_A mol:protein length:119 Corticotropin releasing factor receptor 2
PfamA32U 9-111 -30.900 16  PF16587.5; B8J263_DESDA/16-118; 17 kDa common-antigen outer membrane protein
SCOP207 50-109 -7.840 15  d1u34a1 g.76.1.1 (A:39-133) Corticotropin releasing factor receptor 2, CRFR-2beta {Mouse (Mus musculus) [TaxId: 10090]}
VFDB 2-111 -41.600 21  [M] COG4520 Surface antigen
6 PF00389.30; Q9KCG9_BACHD/20-325; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 306 COG1018 1-306 -103.000 48  [HE] COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases
CSGID 1-306 -106.000 36  IDP02277 glycerate dehydrogenase [Bacillus anthracis str. `Ames Ancestor`] GBAA1434 [Bacillus anthracis str. `Ames Ancestor`]
H.sapiens 1-306 -101.000 43  sp|O43175|SERA_HUMAN D-3-phosphoglycerate dehydrogenase OS=Homo sapiens GN=PHGDH PE=1 SV=4
HGM_OVER 64-229 -3.230 11  PB015879 Q5LJ14_BACFN/120-411 PB015879; Pfam-B_15879;
NEW_HUMAN_DOMAINS 70-149 -5.010 11  sp|Q9UBI9|HDC_HUMAN Headcase protein homolog OS=Homo sapiens GN=HECA PE=1 SV=1
PDB1018 1-304 -109.000 43  2g76_A mol:protein length:335 D-3-phosphoglycerate dehydrogenase
PfamA32U 61-240 -12.100 21  PF05221.17; D9SB20_FIBSS/15-498; S-adenosyl-L-homocysteine hydrolase
100-274 -70.500 36  PF02826.19; Q98GE4_RHILO/107-283; D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
SCOP207 1-123 -48.900 19  d1sc6a2 c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}
91-274 -86.800 45  d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}
VFDB 1-306 -103.000 48  [HE] COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases
7 PF02826.19; Q98GE4_RHILO/107-283; D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 177 COG1018 1-177 -67.100 31  [CHR] COG1052 Lactate dehydrogenase and related dehydrogenases
CSGID 1-177 -72.300 31  IDP02277 glycerate dehydrogenase [Bacillus anthracis str. `Ames Ancestor`] GBAA1434 [Bacillus anthracis str. `Ames Ancestor`]
H.sapiens 1-177 -72.400 35  sp|Q9UBQ7|GRHPR_HUMAN Glyoxylate reductase/hydroxypyruvate reductase OS=Homo sapiens GN=GRHPR PE=1 SV=1
HGM_OVER 11-156 -3.490 9  PB033130 gi|160880323|ref|YP_001559291.1| transglutaminase domain protein [Clostridium phytofermentans ISDg]gi|160428989|gb|ABX42552.1| transglutaminase domain protein [Clostridium phytofermentans ISDg]
NEW_HUMAN_DOMAINS 65-175 -6.160 10  sp|A6NHR9|SMHD1_HUMAN Structural maintenance of chromosomes flexible hinge domain-containing protein 1 OS=Homo sapiens GN=SMCHD1 PE=1 SV=2
PDB1018 1-177 -73.400 38  5tx7_A mol:protein length:327 D-isomer specific 2-hydroxyacid dehydrogenase family protein
PfamA32U 1-177 -70.500 36  PF00389.30; Q9KCG9_BACHD/20-325; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
SCOP207 1-177 -81.300 28  d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}
VFDB 1-177 -67.100 31  [CHR] COG1052 Lactate dehydrogenase and related dehydrogenases
8 PF00198.23; A4ICH2_LEIIN/226-463; 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 238 COG1018 1-238 -91.500 44  [C] KOG0557 Dihydrolipoamide acetyltransferase
CSGID 1-238 -92.500 28  IDP02321 gene: sucB; dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex [Francisella tularensis subsp. tularensis SCHU S4] FTT0077 [Francisella tularensis subsp. tularensis SCHU S4]
H.sapiens 1-236 -90.700 45  sp|O00330|ODPX_HUMAN Pyruvate dehydrogenase protein X component, mitochondrial OS=Homo sapiens GN=PDHX PE=1 SV=3
36-238 -103.000 49  sp|P10515|ODP2_HUMAN Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial OS=Homo sapiens GN=DLAT PE=1 SV=3
HGM_OVER 9-154 -4.730 9  PB060121 Q64SA7_BACFR/1-251 PB060121; Pfam-B_60121;
NEW_HUMAN_DOMAINS 103-174 -5.670 11  sp|Q6NXP2|F71F2_HUMAN Protein FAM71F2 OS=Homo sapiens GN=FAM71F2 PE=2 SV=3
PDB1018 1-238 -102.000 33  3mae_A mol:protein length:256 2-oxoisovalerate dehydrogenase E2 component, dihydrolipoamide acetyltransferase
PfamA32U 4-227 -45.700 9  PF00302.18; B4ET40_PROMH/8-209; Chloramphenicol acetyltransferase
SCOP207 1-238 -104.000 33  d3maea_ c.43.1.0 (A:) automated matches {Listeria monocytogenes [TaxId: 265669]}
VFDB 1-238 -91.500 44  [C] KOG0557 Dihydrolipoamide acetyltransferase
9 PF16078.5; H6C9R5_EXODN/72-112; 2-oxoglutarate dehydrogenase N-terminus 41 COG1018 1-41 -17.300 31  [C] COG0567 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes
CSGID 1-41 -17.300 31  IDP00567 gene: kgd; alpha-ketoglutarate decarboxylase YPO1113 [Yersinia pestis CO92]
H.sapiens 1-41 -15.900 48  sp|Q02218|ODO1_HUMAN 2-oxoglutarate dehydrogenase, mitochondrial OS=Homo sapiens GN=OGDH PE=1 SV=3
HGM_OVER 4-38 -2.010 8  PB007740 Q89YT2_BACTN/1-193 PB007740; Pfam-B_7740;
NEW_HUMAN_DOMAINS 4-38 -7.810 11  sp|Q7Z3U7|MON2_HUMAN Protein MON2 homolog OS=Homo sapiens GN=MON2 PE=1 SV=2
PDB1018 1-41 -17.500 29  2jgd_A mol:protein length:933 2-OXOGLUTARATE DEHYDROGENASE E1 COMPONENT
PfamA32U 11-41 -5.700 9  PF10778.9; Q1ITK9_KORVE/30-184; Halocarboxylic acid dehydrogenase DehI
SCOP207 12-25 -4.640 14  d1hfes_ a.137.4.1 (S:) Fe-only hydrogenase smaller subunit {Desulfovibrio desulfuricans [TaxId: 876]}
VFDB 1-41 -17.300 31  [C] COG0567 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes
10 PF04029.14; H1YDD2_9SPHI/8-231; 2-phosphosulpholactate phosphatase 224 COG1018 8-224 -79.900 30  [HR] COG2045 Phosphosulfolactate phosphohydrolase and related enzymes
CSGID 14-119 -6.320 8  IDP01029 gene: cheY; chemotaxis regulator transmitting signal to flagellar motor component STM1916 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
H.sapiens 5-160 -5.850 9  sp|A8MYU2|KCNU1_HUMAN Potassium channel subfamily U member 1 OS=Homo sapiens GN=KCNU1 PE=2 SV=2
HGM_OVER 69-157 -4.730 14  PB031792 gi|154174791|ref|YP_001409041.1| flavodoxin family protein [Campylobacter curvus 525.92]gi|112804021|gb|EAU01365.1| flavodoxin family protein [Campylobacter curvus 525.92]
NEW_HUMAN_DOMAINS 8-157 -5.700 11  sp|Q9C0C9|UBE2O_HUMAN Ubiquitin-conjugating enzyme E2 O OS=Homo sapiens GN=UBE2O PE=1 SV=3
PDB1018 1-224 -80.900 31  1vr0_A mol:protein length:247 Probable 2-phosphosulfolactate phosphatase
PfamA32U 17-149 -6.810 7  PF09445.10; Q6CRW0_KLULA/100-266; RNA cap guanine-N2 methyltransferase
SCOP207 1-224 -81.300 31  d1vr0a1 c.148.1.1 (A:1-235) 2-phosphosulfolactate phosphatase ComB {Clostridium acetobutylicum [TaxId: 1488]}
VFDB 8-224 -79.900 30  [HR] COG2045 Phosphosulfolactate phosphohydrolase and related enzymes
11 PF16620.5; L5L3U3_PTEAL/250-410; Unstructured linker between I-set domains 2 and 3 on MYLCK 161 COG1018 3-155 -9.510 11  [R] KOG1777 Putative Zn-finger protein
CSGID 5-161 -14.600 12  IDP91521 C2 domain-containing protein [Toxoplasma gondii ME49] TGME49_040910 [Toxoplasma gondii ME49]
H.sapiens 5-139 -18.900 7  sp|P41440|S19A1_HUMAN Folate transporter 1 OS=Homo sapiens GN=SLC19A1 PE=1 SV=3
HGM_OVER 85-124 -4.870 15  PB006205 Q3F123_BACTI/1-181 PB006205; Pfam-B_6205;
NEW_HUMAN_DOMAINS 62-138 -5.520 20  sp|Q86Z02|HIPK1_HUMAN Homeodomain-interacting protein kinase 1 OS=Homo sapiens GN=HIPK1 PE=1 SV=1
PDB1018 33-161 -9.930 10  3gdb_A mol:protein length:937 Putative uncharacterized protein spr0440
39-132 -15.500 14  5lzs_b mol:protein length:245 Uncharacterized protein,eL29
PfamA32U 1-157 -11.000 12  PF05934.11; CLCC1_RAT/3-541; Mid-1-related chloride channel (MCLC)
SCOP207 36-106 -3.060 9  d3s8ga_ f.24.1.1 (A:) Bacterial ba3 type cytochrome c oxidase subunit I {Thermus thermophilus [TaxId: 274]}
VFDB 3-155 -9.510 11  [R] KOG1777 Putative Zn-finger protein
12 PF05635.11; K7WXD0_9NOST/8-110; 23S rRNA-intervening sequence protein 103 COG1018 27-64 -5.800 18  [V] COG1968 Uncharacterized bacitracin resistance protein
CSGID 27-64 -5.610 13  IDP90783 gene: uppP; undecaprenyl pyrophosphate phosphatase [Yersinia pestis CO92] YPO0649 [Yersinia pestis CO92]
H.sapiens 1-81 -7.000 19  sp|Q96QP1|ALPK1_HUMAN Alpha-protein kinase 1 OS=Homo sapiens GN=ALPK1 PE=2 SV=3
HGM_OVER 1-99 -2.910 10  PB034180 _Gut.Meta.Jp.0112129_ gi|163310377|dbj|BABD01000320.1||2 (+ 509:1679~0 complete)
NEW_HUMAN_DOMAINS 3-72 -7.170 12  sp|Q8NI27|THOC2_HUMAN THO complex subunit 2 OS=Homo sapiens GN=THOC2 PE=1 SV=2
PDB1018 1-103 -67.800 35  2gsc_A mol:protein length:128 Putative uncharacterized protein XCC0516
PfamA32U 4-90 -6.770 11  PF10033.9; ATG13_ASPOR/73-313; Autophagy-related protein 13
SCOP207 1-103 -69.300 35  d2gsca1 a.29.16.1 (A:9-125) Uncharacterized protein XCC0516 {Xanthomonas campestris pv. campestris [TaxId: 340]}
VFDB 27-64 -5.800 18  [V] COG1968 Uncharacterized bacitracin resistance protein
13 PF08521.10; B1Y781_LEPCP/20-172; Two-component sensor kinase N-terminal 153 COG1018 1-87 -8.540 10  [R] COG3726 Uncharacterized membrane protein affecting hemolysin expression
CSGID 1-153 -24.200 15  IDP90007 gene: qseC; quorum sensing Escherichia coli regulator C [Escherichia coli O157:H7 EDL933] Z4378 [Escherichia coli O157:H7 str. EDL933]
H.sapiens 16-152 -6.390 10  sp|Q9Y6A4|CP080_HUMAN UPF0468 protein C16orf80 OS=Homo sapiens GN=C16orf80 PE=1 SV=1
HGM_OVER 1-82 -5.380 12  PB009671 Q5LCM2_BACFN/1-111 PB009671; Pfam-B_9671;
NEW_HUMAN_DOMAINS 30-88 -5.310 14  sp|Q9UPR5|NAC2_HUMAN Sodium/calcium exchanger 2 OS=Homo sapiens GN=SLC8A2 PE=2 SV=2
PDB1018 1-153 -48.600 15  2kse_A mol:protein length:186 Sensor protein qseC
PfamA32U 1-87 -9.030 10  PF10144.9; SMP_YERPE/1-162; Bacterial virulence factor haemolysin
SCOP207 26-153 -7.320 9  d2w27a2 d.110.6.2 (A:263-407) Hypothetical protein YkuI, C-terminal domain {Bacillus subtilis [TaxId: 1423]}
VFDB 1-87 -8.540 10  [R] COG3726 Uncharacterized membrane protein affecting hemolysin expression
14 PF08793.10; Q0E553_SFAVA/142-176; 2-cysteine adaptor domain 35 COG1018 1-29 -5.820 24  [S] COG4042 Predicted membrane protein
CSGID 4-35 -3.670 34  IDP02637 gene: pagK; PagK [Salmonella typhimurium LT2] STM1867 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
H.sapiens 7-28 -8.940 45  sp|Q9Y566|SHAN1_HUMAN SH3 and multiple ankyrin repeat domains protein 1 OS=Homo sapiens GN=SHANK1 PE=1 SV=2
HGM_OVER 9-32 -1.200 20  PB007843 JCVI_PEP_1096682172521 /source_dna_id=JCVI_ORF_1096682172520 /offset=0 /translation_table=11 /length=152 /full_length=152
NEW_HUMAN_DOMAINS 10-31 -6.420 36  sp|Q7Z4H7|HAUS6_HUMAN HAUS augmin-like complex subunit 6 OS=Homo sapiens GN=HAUS6 PE=1 SV=2
PDB1018 7-35 -5.070 28  1jy4_A mol:protein length:35 B4DIMER
PfamA32U 9-30 -5.880 22  PF07173.12; J3N9M9_ORYBR/94-237; Glycine-rich domain-containing protein-like
SCOP207 14-34 -4.600 28  d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}
VFDB 1-29 -5.820 24  [S] COG4042 Predicted membrane protein
15 PF11591.8; A1YQX2_VOLCA/1-34; Ferredoxin chloroplastic transit peptide 34 COG1018 7-32 -4.180 8  [S] KOG4051 Uncharacterized conserved protein
CSGID 6-31 -3.280 3  IDP02689 hypothetical protein FTT0903 [Francisella tularensis subsp. tularensis SCHU S4] FTT0903 [Francisella tularensis subsp. tularensis SCHU S4]
H.sapiens 2-28 -6.940 29  sp|Q15424|SAFB1_HUMAN Scaffold attachment factor B1 OS=Homo sapiens GN=SAFB PE=1 SV=4
HGM_OVER 11-34 -1.360 20  HGC00106 gi|162841414|dbj|BABA01003295.1|1.0 TMP01000;
NEW_HUMAN_DOMAINS 7-34 -5.370 21  sp|Q9H5I5|PIEZ2_HUMAN Piezo-type mechanosensitive ion channel component 2 OS=Homo sapiens GN=PIEZO2 PE=2 SV=2
PDB1018 1-28 -18.500 74  1fct_A mol:protein length:32 FERREDOXIN CHLOROPLASTIC TRANSIT PEPTIDE SEQUENCE FROM THE GREEN ALGA
PfamA32U 3-26 -6.820 25  PF08377.10; F1MAQ5_RAT/374-1507; MAP2/Tau projection domain
SCOP207 8-33 -3.830 23  d2q07a3 d.17.6.5 (A:394-459) Uncharacterized protein AF0587 {Archaeoglobus fulgidus [TaxId: 2234]}
VFDB 7-32 -4.180 8  [S] KOG4051 Uncharacterized conserved protein
16 PF01257.19; Q1HPR5_BOMMO/56-203; Thioredoxin-like [2Fe-2S] ferredoxin 148 COG1018 1-147 -74.700 29  [C] COG1905 NADH:ubiquinone oxidoreductase 24 kD subunit
CSGID 9-148 -6.910 15  IDP00729 ABC transporter, ATP-binding protein SACOL2356 [Staphylococcus aureus subsp. aureus COL]
H.sapiens 1-148 -72.900 65  sp|P19404|NDUV2_HUMAN(removed signalp:1-11) NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial OS=Homo sapiens GN=NDUFV2 PE=1 SV=2
HGM_OVER 32-138 -4.210 9  PB007740 Q89YT2_BACTN/1-193 PB007740; Pfam-B_7740;
NEW_HUMAN_DOMAINS 1-45 -5.450 20  sp|Q6ZP01|RBM44_HUMAN RNA-binding protein 44 OS=Homo sapiens GN=RBM44 PE=2 SV=2
PDB1018 1-148 -75.700 35  2fug_2 mol:protein length:181 NADH-quinone oxidoreductase chain 2
PfamA32U 71-147 -17.400 18  PF07845.11; K9UG38_CHAP6/7-125; Protein of unknown function (DUF1636 topsan)
SCOP207 1-148 -76.900 35  d3iam2_ c.47.1.21 (2:) automated matches {Thermus thermophilus HB8 [TaxId: 300852]}
VFDB 1-147 -74.700 29  [C] COG1905 NADH:ubiquinone oxidoreductase 24 kD subunit
17 PF08975.10; B9JYZ4_AGRVS/31-145; Domain of unknown function (DUF1868 topsan) 115 COG1018 1-115 -20.900 53  [S] COG5255 Uncharacterized protein conserved in bacteria
CSGID 5-95 -5.280 15  IDP06160 gene: folE; GTP cyclohydrolase I [Helicobacter pylori J99] NP_223581 [Helicobacter pylori J99]
H.sapiens 14-115 -12.400 18  sp|Q9P0M2|AKA7G_HUMAN A-kinase anchor protein 7 isoform gamma OS=Homo sapiens GN=AKAP7 PE=2 SV=1
HGM_OVER 11-102 -3.810 9  PB009534 gi|153852721|ref|ZP_01994158.1| hypothetical protein DORLON_00140 [Dorea longicatena DSM 13814]gi|149754363|gb|EDM64294.1| hypothetical protein DORLON_00140 [Dorea longicatena DSM 13814]
NEW_HUMAN_DOMAINS 5-84 -7.710 20  sp|Q6ZVL6|CK041_HUMAN UPF0606 protein C11orf41 OS=Homo sapiens GN=C11orf41 PE=2 SV=2
PDB1018 1-115 -55.200 53  2fsq_A mol:protein length:243 Atu0111 protein
PfamA32U 16-111 -10.100 10  PF10469.9; A7UR96_ANOGA/136-349; AKAP7 2`5` RNA ligase-like domain
SCOP207 1-115 -54.500 53  d2fsqa1 d.61.1.4 (A:6-237) Putative phosphoesterase Atu0111 {Agrobacterium tumefaciens [TaxId: 358]}
VFDB 1-115 -20.900 53  [S] COG5255 Uncharacterized protein conserved in bacteria
18 PF03390.15; Q5WJJ9_BACSK/33-442; 2-hydroxycarboxylate transporter family 410 COG1018 1-410 -110.000 31  [C] COG3493 Na+/citrate symporter
CSGID 5-410 -5.860 10  IDP91361 NhaP-type Na+/H+ and K+/H+ antiporters [Vibrio vulnificus CMCP6] VV1_2840 [Vibrio vulnificus CMCP6]
H.sapiens 6-408 -8.680 10  sp|Q86UD5|NHDC2_HUMAN Mitochondrial sodium/hydrogen exchanger NHA2 OS=Homo sapiens GN=NHEDC2 PE=1 SV=2
HGM_OVER 98-195 -5.050 9  PB006154 _JGI.0331794_ 2004021056 [Human Gut Community Subject 7]
NEW_HUMAN_DOMAINS 361-401 -5.480 14  sp|O43313|ATMIN_HUMAN ATM interactor OS=Homo sapiens GN=ATMIN PE=1 SV=2
PDB1018 1-410 -111.000 31  5x9r_A mol:protein length:438 Citrate-sodium symporter
PfamA32U 35-403 -13.400 13  PF05684.12; Q9FLW1_ARATH/79-442; Protein of unknown function (DUF819 topsan)
SCOP207 346-395 -4.470 18  d1g40a3 g.18.1.1 (A:127-184) Complement control protein {Vaccinia virus [TaxId: 10245]}
VFDB 1-410 -110.000 31  [C] COG3493 Na+/citrate symporter
19 PF03171.20; ACCO1_ARATH/158-259; 2OG-Fe(II) oxygenase superfamily 102 COG1018 2-102 -58.100 34  [QR] KOG0143 Iron/ascorbate family oxidoreductases
CSGID 1-102 -45.800 36  IDP00483 putative iron/ascorbate oxidoreductase family protein YPO1316 [Yersinia pestis CO92]
H.sapiens 15-102 -10.700 15  sp|Q02809|PLOD1_HUMAN(removed signalp:1-18) Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1 OS=Homo sapiens GN=PLOD1 PE=1 SV=2
HGM_OVER 63-102 -4.720 12  PB001025 Q1QFV3_NITHX/1-288 PB001025; Pfam-B_1025;
NEW_HUMAN_DOMAINS 12-99 -5.610 15  sp|Q8N7U6|EFHB_HUMAN EF-hand domain-containing family member B OS=Homo sapiens GN=EFHB PE=2 SV=4
PDB1018 1-102 -64.800 62  1w9y_A mol:protein length:319 1-AMINOCYCLOPROPANE-1-CARBOXYLATE OXIDASE 1
PfamA32U 16-98 -8.970 10  PF08007.12; Q9CP87_PASMU/26-337; Cupin superfamily protein
SCOP207 1-102 -64.500 62  d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]}
VFDB 2-102 -58.100 34  [QR] KOG0143 Iron/ascorbate family oxidoreductases
20 PF13532.6; D0N998_PHYIT/73-283; 2OG-Fe(II) oxygenase superfamily 211 COG1018 1-211 -71.500 37  [A] KOG2731 DNA alkylation damage repair protein
CSGID 110-205 -7.900 13  IDP90534 gene: ssb; single-strand DNA-binding protein [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj1071 [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]
H.sapiens 1-211 -60.400 20  sp|Q13686|ALKB1_HUMAN Alkylated DNA repair protein alkB homolog 1 OS=Homo sapiens GN=ALKBH1 PE=1 SV=2
HGM_OVER 83-208 -4.620 10  PB003645 Q65HI2_BACLD/1-230 PB003645; Pfam-B_3645;
NEW_HUMAN_DOMAINS 110-211 -6.370 9  sp|O75161|NPHP4_HUMAN Nephrocystin-4 OS=Homo sapiens GN=NPHP4 PE=1 SV=2
PDB1018 1-211 -83.500 38  5xeg_A mol:protein length:231 Oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed
PfamA32U 1-206 -12.500 9  PF05721.13; Q92PC6_RHIME/55-292; Phytanoyl-CoA dioxygenase (PhyH)
74-210 -13.700 17  PF09859.9; Q98JN4_RHILO/75-246; Oxygenase, catalysing oxidative methylation of damaged DNA
SCOP207 1-211 -67.500 24  d4jhta_ b.82.2.10 (A:) automated matches {Escherichia coli K-12 [TaxId: 83333]}
VFDB 1-211 -71.500 37  [A] KOG2731 DNA alkylation damage repair protein

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Bourne PE, Allerston CK, Krebs W, Li W, Shindyalov IN, Godzik A.,Friedberg I, Liu T, Wild D, Hwang S, Ghahramani Z, Chen L, Westbrook J. The status of structural genomics defined through the analysis of current targets and structures. Pac Symp Biocomput. 2004;:375-86.