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Filter & download results: Zscore <   Identity ≥(%)   Query residues aligned ≥(%)   Max number of homologs:   Template Database:

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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 21-40 of 4052< prev pagenext page >

# Query Length Result vs. Range Score %id Covered by template(s)
21 gi|15896427|ref|NP_349776.1|(removed signalp:1-33) oligopeptide ABC transporter, periplasmic binding component (CA_C3179) [Clostridium acetobutylicum ATCC 824] 534 HGM_OVER 346-491 -4.000 15  PB007147 Q11UU2_CYTH3/1-245 PB007147; Pfam-B_7147;
22 gi|15895557|ref|NP_348906.1| biotin carboxyl carrier protein (CA_C2289) [Clostridium acetobutylicum ATCC 824] 129 HGM_OVER 57-117 -2.840 PB032242 Q8FLW6_COREF/1-257 PB032242; Pfam-B_32242;
23 gi|15894699|ref|NP_348048.1| hypothetical protein (CA_C1420) [Clostridium acetobutylicum ATCC 824] 468 HGM_OVER 295-431 -5.330 13  PB004996 Q5NNS6_ZYMMO/1-150 PB004996; Pfam-B_4996;
24 gi|15004730|ref|NP_149190.1| hypothetical protein (CA_P0026) [Clostridium acetobutylicum ATCC 824] 192 HGM_OVER 19-118 -4.990 16  PB046158 _JGI.0336690_ 2004028347 [Human Gut Community Subject 8]
25 gi|15004854|ref|NP_149314.1| integrin-like repeat-containing lysozyme (CA_P0151) [Clostridium acetobutylicum ATCC 824] 752 HGM_OVER 51-519 -4.390 PB002770 Q744K2_MYCPA/1-559 PB002770; Pfam-B_2770;
26 gi|15004805|ref|NP_149265.1| hypothetical protein (CA_P0102) [Clostridium acetobutylicum ATCC 824] 500 HGM_OVER 135-339 -4.710 PB032242 Q8FLW6_COREF/1-257 PB032242; Pfam-B_32242;
27 gi|15004805|ref|NP_149265.1| hypothetical protein (CA_P0102) [Clostridium acetobutylicum ATCC 824] 500 HGM_OVER 334-475 -6.680 PB202086 Q8G498_BIFLO/2-200 PB202086; Pfam-B_202086;
28 gi|15004805|ref|NP_149265.1| hypothetical protein (CA_P0102) [Clostridium acetobutylicum ATCC 824] 500 HGM_OVER 21-169 -5.630 10  PB202086 Q8G498_BIFLO/2-200 PB202086; Pfam-B_202086;
29 gi|15004805|ref|NP_149265.1| hypothetical protein (CA_P0102) [Clostridium acetobutylicum ATCC 824] 308 HGM_OVER 122-281 -7.100 10  PB032242 Q8FLW6_COREF/1-257 PB032242; Pfam-B_32242;
30 gi|15896509|ref|NP_349858.1| hypothetical protein (CA_C3264) [Clostridium acetobutylicum ATCC 824] 133 HGM_OVER 76-133 -4.520 16  PB000520 Q9RVX4_DEIRA/1-194 PB000520; Pfam-B_520;
31 gi|15896412|ref|NP_349761.1| lysine-specific permease (CA_C3164) [Clostridium acetobutylicum ATCC 824] 489 HGM_OVER 307-419 -4.210 HGC00965 gi|163282470|dbj|BABD01028218.1|2.0 TMP01310;
32 gi|15895899|ref|NP_349248.1| trigger factor (CA_C2641) [Clostridium acetobutylicum ATCC 824] 431 HGM_OVER 276-323 -4.700 18  HGC00915 gi|162810474|dbj|BABA01034235.1|2.0 TMP01234;
33 gi|15895101|ref|NP_348450.1| homoserine O-succinyltransferase (CA_C1825) [Clostridium acetobutylicum ATCC 824] 301 HGM_OVER 101-179 -3.850 16  PB001572 gi|163816107|ref|ZP_02207475.1| hypothetical protein COPEUT_02291 [Coprococcus eutactus ATCC 27759]gi|158448527|gb|EDP25522.1| hypothetical protein COPEUT_02291 [Coprococcus eutactus ATCC 27759]
34 gi|15894638|ref|NP_347987.1|(removed signalp:1-33) xylanase/chitin deacetylase (CA_C1359) [Clostridium acetobutylicum ATCC 824] 244 HGM_OVER 42-141 -3.560 12  PB031792 gi|154174791|ref|YP_001409041.1| flavodoxin family protein [Campylobacter curvus 525.92]gi|112804021|gb|EAU01365.1| flavodoxin family protein [Campylobacter curvus 525.92]
35 gi|15004813|ref|NP_149273.1| NH2-acetyltransferase (CA_P0110) [Clostridium acetobutylicum ATCC 824] 137 HGM_OVER 49-137 -5.700 11  PB012991 Q2RHT0_MOOTA/1-175 PB012991; Pfam-B_12991;
36 gi|15893349|ref|NP_346698.1| hypothetical protein (CA_C0051) [Clostridium acetobutylicum ATCC 824] 66 HGM_OVER 13-63 -2.700 13  PB014120 _Gut.Meta.Jp.0147711_ gi|163636126|dbj|BABG01000147.1||5 (+ 2345:3428~0 complete)
37 gi|15895869|ref|NP_349218.1| hypothetical protein (CA_C2611) [Clostridium acetobutylicum ATCC 824] 207 HGM_OVER 90-207 -4.240 PB042013 A7V626_BACUN/1-162 PB042013; Pfam-B_42013;
38 gi|15894130|ref|NP_347479.1|(removed signalp:1-30) ribonuclease precursor (barnase), secreted (CA_C0843) [Clostridium acetobutylicum ATCC 824] 126 HGM_OVER 35-126 -4.650 20  HGC01024 gi|162869036|dbj|BABB01000971.1|4.0 TMP01399;
39 gi|15895875|ref|NP_349224.1|(removed signalp:1-34) methyl-accepting chemotaxis protein (CA_C2617) [Clostridium acetobutylicum ATCC 824] 630 HGM_OVER 330-487 -4.520 14  PB202086 Q8G498_BIFLO/2-200 PB202086; Pfam-B_202086;
40 gi|15896733|ref|NP_350082.1| transcriptional regulator (CA_C3496) [Clostridium acetobutylicum ATCC 824] 106 HGM_OVER 18-90 -6.520 15  PB128892 A6TNK2_9CLOT/1-174 PB128892; Pfam-B_128892;


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Tkacz A, Godzik A., Rychlewski L. A support vector machine approach to the identification of phosphorylation sites. Cell Mol Biol Lett. 2005;10(1):73-89.