FFAS03 list of results C.trachomatis / HGM

Shows best template from each database, and all templates with significant scores covering different query fragments

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# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|15604718|ref|NP_219502.1| hypothetical protein (CT875) [Chlamydia trachomatis D/UW-3/CX] 591 HGM_OVER 299-381 -4.320 17 HGC00593 gi|162858151|dbj|BABB01011554.1|1.0 TMP00709;
2 gi|15604719|ref|NP_219503.1| hypothetical protein (CT001) [Chlamydia trachomatis D/UW-3/CX] 90 HGM_OVER 22-78 -3.940 13 HGC01215 gi|162843249|dbj|BABA01001460.1|3.0 TMP01713;
3 gi|15604720|ref|NP_219504.1| aspartyl/glutamyl-tRNA amidotransferase subunit C (CT002) [Chlamydia trachomatis D/UW-3/CX] 100 HGM_OVER 1-39 -3.030 12 PB060121 Q64SA7_BACFR/1-251 PB060121; Pfam-B_60121;
4 gi|15604721|ref|NP_219505.1| aspartyl/glutamyl-tRNA amidotransferase subunit A (CT003) [Chlamydia trachomatis D/UW-3/CX] 491 HGM_OVER 25-121 -2.240 9 HGC00024 gi|162813637|dbj|BABA01031072.1|2.0 TMP01508;
5 gi|15604722|ref|NP_219506.1| aspartyl/glutamyl-tRNA amidotransferase subunit B (CT004) [Chlamydia trachomatis D/UW-3/CX] 488 HGM_OVER 166-292 -2.340 15 PB019279 Q5LE73_BACFN/1-147 PB019279; Pfam-B_19279;
6 gi|15604723|ref|NP_219507.1| hypothetical protein (CT005) [Chlamydia trachomatis D/UW-3/CX] 363 HGM_OVER 44-164 -5.790 15 PB053244 _HOMD.0087087_ pint_c_2_2642 Prevotella intermedia 17 [158005 - 157583] (REVERSE SENSE) ORF
7 gi|15604724|ref|NP_219508.1| hypothetical protein (CT006) [Chlamydia trachomatis D/UW-3/CX] 189 HGM_OVER 87-157 -5.350 8 PB009534 gi|153852721|ref|ZP_01994158.1| hypothetical protein DORLON_00140 [Dorea longicatena DSM 13814]gi|149754363|gb|EDM64294.1| hypothetical protein DORLON_00140 [Dorea longicatena DSM 13814]
8 gi|15604725|ref|NP_219509.1| hypothetical protein (CT007) [Chlamydia trachomatis D/UW-3/CX] 316 HGM_OVER 1-199 -10.700 10 PB004718 Q5LIA4_BACFN/1-189 PB004718; Pfam-B_4718;
9 gi|15604726|ref|NP_219510.1| ribonuclease HIII (CT008) [Chlamydia trachomatis D/UW-3/CX] 300 HGM_OVER 92-156 -3.540 18 HGC00711 gi|162743779|dbj|BAAZ01020484.1|1.0 TMP00907;
10 gi|15604727|ref|NP_219511.1| HTH transcriptional regulator (CT009) [Chlamydia trachomatis D/UW-3/CX] 143 HGM_OVER 1-59 -5.700 11 PB001025 Q1QFV3_NITHX/1-288 PB001025; Pfam-B_1025;
11 gi|15604728|ref|NP_219512.1| lipid A biosynthesis lauroyl acyltransferase (CT010) [Chlamydia trachomatis D/UW-3/CX] 455 HGM_OVER 28-317 -4.440 8 PB023890 Q7MUU3_PORGI/1-263 PB023890; Pfam-B_23890;
12 gi|15604729|ref|NP_219513.1| hypothetical protein (CT011) [Chlamydia trachomatis D/UW-3/CX] 418 HGM_OVER 1-172 -6.260 7 PB011023 A7V2G7_BACUN/1-167 PB011023; Pfam-B_11023;
13 gi|15604730|ref|NP_219514.1| hypothetical protein (CT012) [Chlamydia trachomatis D/UW-3/CX] 264 HGM_OVER 105-216 -5.230 8 PB004996 Q5NNS6_ZYMMO/1-150 PB004996; Pfam-B_4996;
14 gi|15604731|ref|NP_219515.1| cytochrome d ubiquinol oxidase subunit I (CT013) [Chlamydia trachomatis D/UW-3/CX] 446 HGM_OVER 219-435 -3.670 10 HGC00024 gi|162813637|dbj|BABA01031072.1|2.0 TMP01508;
15 gi|15604732|ref|NP_219516.1| cytochrome d ubiquinol oxidase subunit II (CT014) [Chlamydia trachomatis D/UW-3/CX] 353 HGM_OVER 23-173 -3.550 8 PB007011 gi|160888195|ref|ZP_02069198.1| hypothetical protein BACUNI_00603 [Bacteroides uniformis ATCC 8492]gi|156862330|gb|EDO55761.1| hypothetical protein BACUNI_00603 [Bacteroides uniformis ATCC 8492]
16 gi|15604733|ref|NP_219517.1| ATPase (CT015) [Chlamydia trachomatis D/UW-3/CX] 434 HGM_OVER 229-406 -3.760 13 PB006791 A6TXD6_9CLOT/1-181 PB006791; Pfam-B_6791;
17 gi|15604734|ref|NP_219518.1| hypothetical protein (CT016) [Chlamydia trachomatis D/UW-3/CX] 242 HGM_OVER 142-239 -5.580 14 HGC00991 gi|163600283|dbj|BABF01000984.1|3.0 TMP01348;
18 gi|15604735|ref|NP_219519.1| hypothetical protein (CT017) [Chlamydia trachomatis D/UW-3/CX] 433 HGM_OVER 40-157 -5.920 15 PB044572 Q8A533_BACTN/1-343 PB044572; Pfam-B_44572;
19 gi|15604736|ref|NP_219520.1| hypothetical protein (CT018) [Chlamydia trachomatis D/UW-3/CX] 157 HGM_OVER 24-122 -4.040 6 HGC00690 gi|162868815|dbj|BABB01001192.1|3.0 TMP00870;
20 gi|15604737|ref|NP_219521.1| isoleucyl-tRNA synthetase (CT019) [Chlamydia trachomatis D/UW-3/CX] 500 HGM_OVER 13-396 -4.120 12 PB002589 gi|91201099|emb|CAJ74158.1| hypothetical protein [Candidatus Kuenenia stuttgartiensis]

FFAS is supported by the NIH grant R01-GM087218-01

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#	Query	Length	Result vs.	Range	Score	%id	Covered by template(s)
1	`gi\|15604718\|ref\|NP_219502.1\| hypothetical protein (CT875) [Chlamydia trachomatis D/UW-3/CX]`	`591`	`HGM_OVER`	`299-381`	`-4.320`	`17`	`HGC00593 gi\|162858151\|dbj\|BABB01011554.1\|1.0 TMP00709;`
2	`gi\|15604719\|ref\|NP_219503.1\| hypothetical protein (CT001) [Chlamydia trachomatis D/UW-3/CX]`	`90`	`HGM_OVER`	`22-78`	`-3.940`	`13`	`HGC01215 gi\|162843249\|dbj\|BABA01001460.1\|3.0 TMP01713;`
3	`gi\|15604720\|ref\|NP_219504.1\| aspartyl/glutamyl-tRNA amidotransferase subunit C (CT002) [Chlamydia trachomatis D/UW-3/CX]`	`100`	`HGM_OVER`	`1-39`	`-3.030`	`12`	`PB060121 Q64SA7_BACFR/1-251 PB060121; Pfam-B_60121;`
4	`gi\|15604721\|ref\|NP_219505.1\| aspartyl/glutamyl-tRNA amidotransferase subunit A (CT003) [Chlamydia trachomatis D/UW-3/CX]`	`491`	`HGM_OVER`	`25-121`	`-2.240`	`9`	`HGC00024 gi\|162813637\|dbj\|BABA01031072.1\|2.0 TMP01508;`
5	`gi\|15604722\|ref\|NP_219506.1\| aspartyl/glutamyl-tRNA amidotransferase subunit B (CT004) [Chlamydia trachomatis D/UW-3/CX]`	`488`	`HGM_OVER`	`166-292`	`-2.340`	`15`	`PB019279 Q5LE73_BACFN/1-147 PB019279; Pfam-B_19279;`
6	`gi\|15604723\|ref\|NP_219507.1\| hypothetical protein (CT005) [Chlamydia trachomatis D/UW-3/CX]`	`363`	`HGM_OVER`	`44-164`	`-5.790`	`15`	`PB053244 _HOMD.0087087_ pint_c_2_2642 Prevotella intermedia 17 [158005 - 157583] (REVERSE SENSE) ORF`
7	`gi\|15604724\|ref\|NP_219508.1\| hypothetical protein (CT006) [Chlamydia trachomatis D/UW-3/CX]`	`189`	`HGM_OVER`	`87-157`	`-5.350`	`8`	`PB009534 gi\|153852721\|ref\|ZP_01994158.1\| hypothetical protein DORLON_00140 [Dorea longicatena DSM 13814]gi\|149754363\|gb\|EDM64294.1\| hypothetical protein DORLON_00140 [Dorea longicatena DSM 13814]`
8	`gi\|15604725\|ref\|NP_219509.1\| hypothetical protein (CT007) [Chlamydia trachomatis D/UW-3/CX]`	`316`	`HGM_OVER`	`1-199`	`-10.700`	`10`	`PB004718 Q5LIA4_BACFN/1-189 PB004718; Pfam-B_4718;`
9	`gi\|15604726\|ref\|NP_219510.1\| ribonuclease HIII (CT008) [Chlamydia trachomatis D/UW-3/CX]`	`300`	`HGM_OVER`	`92-156`	`-3.540`	`18`	`HGC00711 gi\|162743779\|dbj\|BAAZ01020484.1\|1.0 TMP00907;`
10	`gi\|15604727\|ref\|NP_219511.1\| HTH transcriptional regulator (CT009) [Chlamydia trachomatis D/UW-3/CX]`	`143`	`HGM_OVER`	`1-59`	`-5.700`	`11`	`PB001025 Q1QFV3_NITHX/1-288 PB001025; Pfam-B_1025;`
11	`gi\|15604728\|ref\|NP_219512.1\| lipid A biosynthesis lauroyl acyltransferase (CT010) [Chlamydia trachomatis D/UW-3/CX]`	`455`	`HGM_OVER`	`28-317`	`-4.440`	`8`	`PB023890 Q7MUU3_PORGI/1-263 PB023890; Pfam-B_23890;`
12	`gi\|15604729\|ref\|NP_219513.1\| hypothetical protein (CT011) [Chlamydia trachomatis D/UW-3/CX]`	`418`	`HGM_OVER`	`1-172`	`-6.260`	`7`	`PB011023 A7V2G7_BACUN/1-167 PB011023; Pfam-B_11023;`
13	`gi\|15604730\|ref\|NP_219514.1\| hypothetical protein (CT012) [Chlamydia trachomatis D/UW-3/CX]`	`264`	`HGM_OVER`	`105-216`	`-5.230`	`8`	`PB004996 Q5NNS6_ZYMMO/1-150 PB004996; Pfam-B_4996;`
14	`gi\|15604731\|ref\|NP_219515.1\| cytochrome d ubiquinol oxidase subunit I (CT013) [Chlamydia trachomatis D/UW-3/CX]`	`446`	`HGM_OVER`	`219-435`	`-3.670`	`10`	`HGC00024 gi\|162813637\|dbj\|BABA01031072.1\|2.0 TMP01508;`
15	`gi\|15604732\|ref\|NP_219516.1\| cytochrome d ubiquinol oxidase subunit II (CT014) [Chlamydia trachomatis D/UW-3/CX]`	`353`	`HGM_OVER`	`23-173`	`-3.550`	`8`	`PB007011 gi\|160888195\|ref\|ZP_02069198.1\| hypothetical protein BACUNI_00603 [Bacteroides uniformis ATCC 8492]gi\|156862330\|gb\|EDO55761.1\| hypothetical protein BACUNI_00603 [Bacteroides uniformis ATCC 8492]`
16	`gi\|15604733\|ref\|NP_219517.1\| ATPase (CT015) [Chlamydia trachomatis D/UW-3/CX]`	`434`	`HGM_OVER`	`229-406`	`-3.760`	`13`	`PB006791 A6TXD6_9CLOT/1-181 PB006791; Pfam-B_6791;`
17	`gi\|15604734\|ref\|NP_219518.1\| hypothetical protein (CT016) [Chlamydia trachomatis D/UW-3/CX]`	`242`	`HGM_OVER`	`142-239`	`-5.580`	`14`	`HGC00991 gi\|163600283\|dbj\|BABF01000984.1\|3.0 TMP01348;`
18	`gi\|15604735\|ref\|NP_219519.1\| hypothetical protein (CT017) [Chlamydia trachomatis D/UW-3/CX]`	`433`	`HGM_OVER`	`40-157`	`-5.920`	`15`	`PB044572 Q8A533_BACTN/1-343 PB044572; Pfam-B_44572;`
19	`gi\|15604736\|ref\|NP_219520.1\| hypothetical protein (CT018) [Chlamydia trachomatis D/UW-3/CX]`	`157`	`HGM_OVER`	`24-122`	`-4.040`	`6`	`HGC00690 gi\|162868815\|dbj\|BABB01001192.1\|3.0 TMP00870;`
20	`gi\|15604737\|ref\|NP_219521.1\| isoleucyl-tRNA synthetase (CT019) [Chlamydia trachomatis D/UW-3/CX]`	`500`	`HGM_OVER`	`13-396`	`-4.120`	`12`	`PB002589 gi\|91201099\|emb\|CAJ74158.1\| hypothetical protein [Candidatus Kuenenia stuttgartiensis]`