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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 4372next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|15607143|ref|NP_214515.1| chromosomal replication initiation protein (Rv0001) [Mycobacterium tuberculosis H37Rv] 507 CSGID 6-502 -117.000 47  IDP00004 Chromosomal replication initiator protein dnaA BA_0001 [Bacillus anthracis str. Ames]
2 gi|15607144|ref|NP_214516.1| DNA polymerase III subunit beta (Rv0002) [Mycobacterium tuberculosis H37Rv] 402 CSGID 13-400 -97.100 29  IDP90614 DNA polymerase III subunit beta [Vibrio cholerae O1 biovar eltor str. N16961] VC0013 [Vibrio cholerae O1 biovar El Tor str. N16961]
3 gi|15607145|ref|NP_214517.1| recombination protein F (Rv0003) [Mycobacterium tuberculosis H37Rv] 385 CSGID 1-377 -101.000 25  IDP00109 gene: recF; Rec protein NT01SF4517 [Shigella flexneri 2a str. 2457T]
4 gi|15607146|ref|NP_214518.1| hypothetical protein (Rv0004) [Mycobacterium tuberculosis H37Rv] 187 CSGID 52-165 -42.200 14  IDP90373 hypothetical protein [Chlamydia trachomatis D/UW-3/CX] CT_191 [Chlamydia trachomatis D/UW-3/CX]
5 gi|15607147|ref|NP_214519.1| DNA gyrase subunit B (Rv0005) [Mycobacterium tuberculosis H37Rv] 714 CSGID 5-714 -82.600 34  IDP92137 DNA gyrase subunit B, putative [Toxoplasma gondii ME49] TGME49_097780 [Toxoplasma gondii ME49]
37-714 -192.000 51  IDP02606 gene: gyrB; DNA gyrase subunit B [Listeria monocytogenes EGD-e] lmo0006 [Listeria monocytogenes EGD-e]
6 gi|15607148|ref|NP_214520.1| DNA gyrase subunit A (Rv0006) [Mycobacterium tuberculosis H37Rv] 838 CSGID 9-838 -167.000 46  IDP90834 DNA gyrase, subunit A [Vibrio cholerae O1 biovar eltor str. N16961] VC1258 [Vibrio cholerae O1 biovar El Tor str. N16961]
7 gi|15607149|ref|NP_214521.1| hypothetical protein (Rv0007) [Mycobacterium tuberculosis H37Rv] 304 CSGID 1-294 -11.300 10  IDP91949 pneumococcal histidine triad protein E [Streptococcus pneumoniae str. Canada MDR_19A] SpneCM_010100007099 [Streptococcus pneumoniae str. Canada MDR_19A]
8 gi|15607150|ref|NP_214522.1| hypothetical protein (Rv0008c) [Mycobacterium tuberculosis H37Rv] 145 CSGID 7-133 -6.430 26  IDP90283 gene: GRA6; granule antigen protein GRA6 [Toxoplasma gondii] TGME49_075440 [Toxoplasma gondii]
9 gi|15607151|ref|NP_214523.1| iron-regulated peptidyl-prolyl cis-trans isomerase A (Rv0009) [Mycobacterium tuberculosis H37Rv] 182 CSGID 13-173 -84.000 41  IDP01228 peptidyl-prolyl cis-trans isomerase, cyclophilin-type BA_4283 [Bacillus anthracis str. Ames]
10 gi|15607152|ref|NP_214524.1| hypothetical protein (Rv0010c) [Mycobacterium tuberculosis H37Rv] 141 CSGID 18-141 -6.160 11  IDP95308 hypothetical protein VCA0021 [Vibrio cholerae O1 biovar El Tor str. N16961] NP_232422 [Vibrio cholerae O1 biovar El Tor str. N16961]
11 gi|15607153|ref|NP_214525.1| putative septation inhibitor protein (Rv0011c) [Mycobacterium tuberculosis H37Rv] 93 CSGID 3-59 -5.620 IDP05012 cell wall surface anchor family protein [Bacillus anthracis str. Ames] BA_5070 [Bacillus anthracis str. Ames]
12 gi|15607154|ref|NP_214526.1| hypothetical protein (Rv0012) [Mycobacterium tuberculosis H37Rv] 262 CSGID 22-256 -70.300 15  IDP05645 hypothetical protein CD3297 [Clostridium difficile 630] CD3297 [Peptoclostridium difficile 630]
13 gi|57116682|ref|YP_177615.1| para-aminobenzoate synthase component II (Rv0013) [Mycobacterium tuberculosis H37Rv] 232 CSGID 1-232 -102.000 100  IDP06559 anthranilate synthase component II [Mycobacterium tuberculosis H37Rv] YP_177615 [Mycobacterium tuberculosis H37Rv]
14 gi|15607156|ref|NP_214528.1| transmembrane serine/threonine-protein kinase B PKNB (protein kinase B) (STPK B) (Rv0014c) [Mycobacterium tuberculosis H37Rv] 626 CSGID 1-626 -138.000 27  IDP06302 serine/threonine protein kinase [Streptococcus pneumoniae TIGR4] NP_346168 [Streptococcus pneumoniae TIGR4]
15 gi|15607157|ref|NP_214529.1| transmembrane serine/threonine-protein kinase A PKNA (protein kinase A) (STPK A) (Rv0015c) [Mycobacterium tuberculosis H37Rv] 431 CSGID 4-427 -101.000 28  IDP06302 serine/threonine protein kinase [Streptococcus pneumoniae TIGR4] NP_346168 [Streptococcus pneumoniae TIGR4]
16 gi|15607158|ref|NP_214530.1|(removed signalp:1-30) penicillin-binding protein PbpA (Rv0016c) [Mycobacterium tuberculosis H37Rv] 461 CSGID 12-458 -101.000 23  IDP00345 hypothetical protein lmo0441 lmo0441 [Listeria monocytogenes EGD-e]
17 gi|15607159|ref|NP_214531.1|(removed signalp:1-35) cell division protein RodA (Rv0017c) [Mycobacterium tuberculosis H37Rv] 434 CSGID 12-414 -15.200 12  IDP91390 Lipid A core - O-antigen ligase [Vibrio vulnificus CMCP6] VV1_1426 [Vibrio vulnificus CMCP6]
18 gi|15607160|ref|NP_214532.1| serine/threonine phosphatase (Rv0018c) [Mycobacterium tuberculosis H37Rv] 514 CSGID 8-248 -82.000 34  IDP02614 hypothetical protein lmo1821 [Listeria monocytogenes EGD-e] lmo1821 [Listeria monocytogenes EGD-e]
12-419 -25.800 14  IDP92014 protein phosphatase 2C, putative [Toxoplasma gondii ME49] TGME49_067100 [Toxoplasma gondii ME49]
19 gi|15607161|ref|NP_214533.1| hypothetical protein (Rv0019c) [Mycobacterium tuberculosis H37Rv] 155 CSGID 63-154 -31.000 17  IDP92663 hypothetical protein BB0811 [Bordetella bronchiseptica RB50] NP_887360 [Bordetella bronchiseptica RB50]
20 gi|15607162|ref|NP_214534.1| hypothetical protein (Rv0020c) [Mycobacterium tuberculosis H37Rv] 527 CSGID 32-520 -13.400 IDP91521 C2 domain-containing protein [Toxoplasma gondii ME49] TGME49_040910 [Toxoplasma gondii ME49]
443-526 -24.600 22  IDP92663 hypothetical protein BB0811 [Bordetella bronchiseptica RB50] NP_887360 [Bordetella bronchiseptica RB50]

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Jaroszewski L, Godzik A. Clustering of highly homologous sequences to reduce the size of large protein databases. Bioinformatics. 2001 Mar;17(3):282-3.