FFAS03 list of results B.fragilis / CSGID

Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 4678 next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|60680547|ref|YP_210691.1| hypothetical protein (BF1003) [Bacteroides fragilis NCTC 9343] 117 CSGID 26-117 -35.600 14 IDP06550 set218a-004 [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
2 gi|60680256|ref|YP_210400.1| hypothetical protein (BF0697) [Bacteroides fragilis NCTC 9343] 74 CSGID 47-74 -6.610 32 IDP05388 hypothetical protein BA_2383 [Bacillus anthracis str. Ames] BA_2383 [Bacillus anthracis str. Ames]
3 gi|60681449|ref|YP_211593.1| MatE family transmembrane protein (BF1960) [Bacteroides fragilis NCTC 9343] 447 CSGID 1-442 -95.300 20 IDP05138 putative drug/sodium antiporter [Clostridium difficile 630] CD2874 [Peptoclostridium difficile 630]
4 gi|60683425|ref|YP_213569.1| 30S ribosomal protein S14 (BF3990) [Bacteroides fragilis NCTC 9343] 99 CSGID 41-99 -43.300 39 IDP04080 30S ribosomal protein S14 [Bacillus anthracis str. Sterne] BAS0123 [Bacillus anthracis str. Sterne]
5 gi|60682385|ref|YP_212529.1| putative CTP pyrophosphohydrolase (BF2916) [Bacteroides fragilis NCTC 9343] 130 CSGID 1-129 -77.700 29 IDP02584 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase [Salmonella typhimurium LT2] STM1301 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
6 gi|60680762|ref|YP_210906.1| putative transmembrane conjugate transposon protein (BF1242) [Bacteroides fragilis NCTC 9343] 110 CSGID 8-77 -6.060 20 IDP02016 hypothetical protein YPO0252 [Yersinia pestis CO92] YPO0252 [Yersinia pestis CO92]
7 gi|60683330|ref|YP_213474.1| ATP-dependent protease ATP-binding subunit ClpX (BF3893) [Bacteroides fragilis NCTC 9343] 415 CSGID 6-415 -104.000 51 IDP02333 gene: clpX; ATP-dependent protease ATP-binding subunit [Francisella tularensis subsp. tularensis SCHU S4] FTT0625 [Francisella tularensis subsp. tularensis SCHU S4]
8 gi|60682477|ref|YP_212621.1|(removed signalp:1-23) hypothetical protein (BF3007) [Bacteroides fragilis NCTC 9343] 565 CSGID 4-343 -32.800 8 IDP04095 hypothetical protein [Yersinia pestis CO92] YPO1987 [Yersinia pestis CO92]
4-564 -24.000 10 IDP02495 gene: pflA; paralyzed flagella protein PflA [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj1565c [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]
9 gi|60681243|ref|YP_211387.1| hypothetical protein (BF1751) [Bacteroides fragilis NCTC 9343] 157 CSGID 1-117 -7.550 6 IDP06159 hypothetical protein jhp0866 [Helicobacter pylori J99] NP_223584 [Helicobacter pylori J99]
10 gi|60682315|ref|YP_212459.1| hypothetical protein (BF2845) [Bacteroides fragilis NCTC 9343] 207 CSGID 146-206 -6.380 18 IDP91376 hypothetical protein VV1_1694 [Vibrio vulnificus CMCP6] VV1_1694 [Vibrio vulnificus CMCP6]
11 gi|60680924|ref|YP_211068.1| putative anti-sigma factor (BF1413) [Bacteroides fragilis NCTC 9343] 311 CSGID 116-282 -6.240 13 IDP95268 hypothetical protein A1S_0043 [Acinetobacter baumannii ATCC 17978] YP_001083140 [Acinetobacter baumannii ATCC 17978]
12 gi|60683563|ref|YP_213707.1| putative SufE Fe/S-cluster-related protein (BF4142) [Bacteroides fragilis NCTC 9343] 142 CSGID 1-136 -74.300 30 IDP00875 gene: ynhA; cysteine desufuration protein SufE STM1374 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
13 gi|60682225|ref|YP_212369.1| putative two component system response regulator (BF2753) [Bacteroides fragilis NCTC 9343] 225 CSGID 1-225 -94.900 28 IDP95294 response regulator protein [Staphylococcus aureus subsp. aureus USA300_FPR3757] YP_494943 [Staphylococcus aureus subsp. aureus USA300_FPR3757]
14 gi|60682801|ref|YP_212945.1| nicotinate phosphoribosyltransferase (BF3334) [Bacteroides fragilis NCTC 9343] 388 CSGID 2-388 -96.800 33 IDP90895 gene: pncB; nicotinate phosphoribosyltransferase [Yersinia pestis CO92] YPO1413 [Yersinia pestis CO92]
15 gi|60680875|ref|YP_211019.1| hypothetical protein (BF1359) [Bacteroides fragilis NCTC 9343] 245 CSGID 2-244 -20.000 12 IDP05456 putative wall-associated protein [Bacillus anthracis str. Ames] BA_1094 [Bacillus anthracis str. Ames]
16 gi|60682029|ref|YP_212173.1| putative bifunctional CbiF/CbiG cobalamin biosynthesis protein (BF2549) [Bacteroides fragilis NCTC 9343] 599 CSGID 1-346 -72.900 28 IDP93847 cobalamin biosynthesis protein CbiG [Yersinia enterocolitica subsp. enterocolitica 8081] YP_001006909 [Yersinia enterocolitica subsp. enterocolitica 8081]
352-598 -65.700 44 IDP05539 gene: cbiF; precorrin-4 C(11)-methyltransferase [Clostridium difficile 630] CD3426 [Peptoclostridium difficile 630]
17 gi|60681247|ref|YP_211391.1| hypothetical protein (BF1755) [Bacteroides fragilis NCTC 9343] 299 CSGID 120-299 -36.200 13 IDP90083 hypothetical protein CGSHiII_00664 [Haemophilus influenzae PittII] ZP_01795671 [Haemophilus influenzae PittII]
171-299 -36.900 17 IDP06196 hypothetical protein HP0336 [Helicobacter pylori 26695] NP_207134 [Helicobacter pylori 26695]
18 gi|60681605|ref|YP_211749.1| hypothetical protein (BF2124) [Bacteroides fragilis NCTC 9343] 361 CSGID 155-354 -6.830 12 IDP06453 gene: F4L; F4L [Monkeypox virus Zaire-96-I-16] NP_536480 [Monkeypox virus Zaire-96-I-16]
19 gi|60681337|ref|YP_211481.1| hypothetical protein (BF1846) [Bacteroides fragilis NCTC 9343] 71 CSGID 3-53 -5.650 7 IDP05644 gene: bclA2; exosporium glycoprotein [Clostridium difficile 630] CD3230 [Peptoclostridium difficile 630]
20 gi|60680681|ref|YP_210825.1| hypothetical protein (BF1156) [Bacteroides fragilis NCTC 9343] 221 CSGID 3-207 -51.400 11 IDP01014 gene: pipB2; secreted effector protein STM2780 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]

FFAS is supported by the NIH grant R01-GM087218-01

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#	Query	Length	Result vs.	Range	Score	%id	Covered by template(s)
1	`gi\|60680547\|ref\|YP_210691.1\| hypothetical protein (BF1003) [Bacteroides fragilis NCTC 9343]`	`117`	`CSGID`	`26-117`	`-35.600`	`14`	`IDP06550 set218a-004 [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]`
2	`gi\|60680256\|ref\|YP_210400.1\| hypothetical protein (BF0697) [Bacteroides fragilis NCTC 9343]`	`74`	`CSGID`	`47-74`	`-6.610`	`32`	`IDP05388 hypothetical protein BA_2383 [Bacillus anthracis str. Ames] BA_2383 [Bacillus anthracis str. Ames]`
3	`gi\|60681449\|ref\|YP_211593.1\| MatE family transmembrane protein (BF1960) [Bacteroides fragilis NCTC 9343]`	`447`	`CSGID`	`1-442`	`-95.300`	`20`	`IDP05138 putative drug/sodium antiporter [Clostridium difficile 630] CD2874 [Peptoclostridium difficile 630]`
4	`gi\|60683425\|ref\|YP_213569.1\| 30S ribosomal protein S14 (BF3990) [Bacteroides fragilis NCTC 9343]`	`99`	`CSGID`	`41-99`	`-43.300`	`39`	`IDP04080 30S ribosomal protein S14 [Bacillus anthracis str. Sterne] BAS0123 [Bacillus anthracis str. Sterne]`
5	`gi\|60682385\|ref\|YP_212529.1\| putative CTP pyrophosphohydrolase (BF2916) [Bacteroides fragilis NCTC 9343]`	`130`	`CSGID`	`1-129`	`-77.700`	`29`	`IDP02584 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase [Salmonella typhimurium LT2] STM1301 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]`
6	`gi\|60680762\|ref\|YP_210906.1\| putative transmembrane conjugate transposon protein (BF1242) [Bacteroides fragilis NCTC 9343]`	`110`	`CSGID`	`8-77`	`-6.060`	`20`	`IDP02016 hypothetical protein YPO0252 [Yersinia pestis CO92] YPO0252 [Yersinia pestis CO92]`
7	`gi\|60683330\|ref\|YP_213474.1\| ATP-dependent protease ATP-binding subunit ClpX (BF3893) [Bacteroides fragilis NCTC 9343]`	`415`	`CSGID`	`6-415`	`-104.000`	`51`	`IDP02333 gene: clpX; ATP-dependent protease ATP-binding subunit [Francisella tularensis subsp. tularensis SCHU S4] FTT0625 [Francisella tularensis subsp. tularensis SCHU S4]`
8	`gi\|60682477\|ref\|YP_212621.1\|(removed signalp:1-23) hypothetical protein (BF3007) [Bacteroides fragilis NCTC 9343]`	`565`	`CSGID`	`4-343`	`-32.800`	`8`	`IDP04095 hypothetical protein [Yersinia pestis CO92] YPO1987 [Yersinia pestis CO92]`
				`4-564`	`-24.000`	`10`	`IDP02495 gene: pflA; paralyzed flagella protein PflA [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj1565c [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]`
9	`gi\|60681243\|ref\|YP_211387.1\| hypothetical protein (BF1751) [Bacteroides fragilis NCTC 9343]`	`157`	`CSGID`	`1-117`	`-7.550`	`6`	`IDP06159 hypothetical protein jhp0866 [Helicobacter pylori J99] NP_223584 [Helicobacter pylori J99]`
10	`gi\|60682315\|ref\|YP_212459.1\| hypothetical protein (BF2845) [Bacteroides fragilis NCTC 9343]`	`207`	`CSGID`	`146-206`	`-6.380`	`18`	`IDP91376 hypothetical protein VV1_1694 [Vibrio vulnificus CMCP6] VV1_1694 [Vibrio vulnificus CMCP6]`
11	`gi\|60680924\|ref\|YP_211068.1\| putative anti-sigma factor (BF1413) [Bacteroides fragilis NCTC 9343]`	`311`	`CSGID`	`116-282`	`-6.240`	`13`	`IDP95268 hypothetical protein A1S_0043 [Acinetobacter baumannii ATCC 17978] YP_001083140 [Acinetobacter baumannii ATCC 17978]`
12	`gi\|60683563\|ref\|YP_213707.1\| putative SufE Fe/S-cluster-related protein (BF4142) [Bacteroides fragilis NCTC 9343]`	`142`	`CSGID`	`1-136`	`-74.300`	`30`	`IDP00875 gene: ynhA; cysteine desufuration protein SufE STM1374 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]`
13	`gi\|60682225\|ref\|YP_212369.1\| putative two component system response regulator (BF2753) [Bacteroides fragilis NCTC 9343]`	`225`	`CSGID`	`1-225`	`-94.900`	`28`	`IDP95294 response regulator protein [Staphylococcus aureus subsp. aureus USA300_FPR3757] YP_494943 [Staphylococcus aureus subsp. aureus USA300_FPR3757]`
14	`gi\|60682801\|ref\|YP_212945.1\| nicotinate phosphoribosyltransferase (BF3334) [Bacteroides fragilis NCTC 9343]`	`388`	`CSGID`	`2-388`	`-96.800`	`33`	`IDP90895 gene: pncB; nicotinate phosphoribosyltransferase [Yersinia pestis CO92] YPO1413 [Yersinia pestis CO92]`
15	`gi\|60680875\|ref\|YP_211019.1\| hypothetical protein (BF1359) [Bacteroides fragilis NCTC 9343]`	`245`	`CSGID`	`2-244`	`-20.000`	`12`	`IDP05456 putative wall-associated protein [Bacillus anthracis str. Ames] BA_1094 [Bacillus anthracis str. Ames]`
16	`gi\|60682029\|ref\|YP_212173.1\| putative bifunctional CbiF/CbiG cobalamin biosynthesis protein (BF2549) [Bacteroides fragilis NCTC 9343]`	`599`	`CSGID`	`1-346`	`-72.900`	`28`	`IDP93847 cobalamin biosynthesis protein CbiG [Yersinia enterocolitica subsp. enterocolitica 8081] YP_001006909 [Yersinia enterocolitica subsp. enterocolitica 8081]`
				`352-598`	`-65.700`	`44`	`IDP05539 gene: cbiF; precorrin-4 C(11)-methyltransferase [Clostridium difficile 630] CD3426 [Peptoclostridium difficile 630]`
17	`gi\|60681247\|ref\|YP_211391.1\| hypothetical protein (BF1755) [Bacteroides fragilis NCTC 9343]`	`299`	`CSGID`	`120-299`	`-36.200`	`13`	`IDP90083 hypothetical protein CGSHiII_00664 [Haemophilus influenzae PittII] ZP_01795671 [Haemophilus influenzae PittII]`
				`171-299`	`-36.900`	`17`	`IDP06196 hypothetical protein HP0336 [Helicobacter pylori 26695] NP_207134 [Helicobacter pylori 26695]`
18	`gi\|60681605\|ref\|YP_211749.1\| hypothetical protein (BF2124) [Bacteroides fragilis NCTC 9343]`	`361`	`CSGID`	`155-354`	`-6.830`	`12`	`IDP06453 gene: F4L; F4L [Monkeypox virus Zaire-96-I-16] NP_536480 [Monkeypox virus Zaire-96-I-16]`
19	`gi\|60681337\|ref\|YP_211481.1\| hypothetical protein (BF1846) [Bacteroides fragilis NCTC 9343]`	`71`	`CSGID`	`3-53`	`-5.650`	`7`	`IDP05644 gene: bclA2; exosporium glycoprotein [Clostridium difficile 630] CD3230 [Peptoclostridium difficile 630]`
20	`gi\|60680681\|ref\|YP_210825.1\| hypothetical protein (BF1156) [Bacteroides fragilis NCTC 9343]`	`221`	`CSGID`	`3-207`	`-51.400`	`11`	`IDP01014 gene: pipB2; secreted effector protein STM2780 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]`