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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 4778next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|29345411|ref|NP_808914.1| hypothetical protein BT_0001 [Bacteroides thetaiotaomicron VPI-5482] 205 PDB1018 7-95 -7.070 11  1nkw_S mol:protein length:115 50S ribosomal protein L24
2 gi|29345412|ref|NP_808915.1|(removed signal:1-19) hypothetical protein BT_0002 [Bacteroides thetaiotaomicron VPI-5482] 312 PDB1018 2-264 -7.920 4dkd_C mol:protein length:292 Macrophage colony-stimulating factor 1 receptor
3 gi|29345413|ref|NP_808916.1| hypothetical protein BT_0003 [Bacteroides thetaiotaomicron VPI-5482] 258 PDB1018 2-258 -96.300 54  4fmr_A mol:protein length:265 uncharacterized hypothetical protein
4 gi|29345414|ref|NP_808917.1| hypothetical protein BT_0004 [Bacteroides thetaiotaomicron VPI-5482] 222 PDB1018 64-209 -7.100 21  1zw9_A mol:protein length:240 HSP82
5 gi|29345415|ref|NP_808918.1| 30S ribosomal protein S17 BT_0005 [Bacteroides thetaiotaomicron VPI-5482] 178 PDB1018 1-177 -63.900 20  5oql_v mol:protein length:161 40S ribosomal protein S11-like protein
85-177 -65.900 43  5o5j_Q mol:protein length:98 30S ribosomal protein S17
6 gi|29345416|ref|NP_808919.1| hypothetical protein BT_0006 [Bacteroides thetaiotaomicron VPI-5482] 148 PDB1018 9-73 -8.590 21  1wwx_A mol:protein length:107 E74-like factor 5 ESE-2b
7 gi|29345417|ref|NP_808920.1| hypothetical protein BT_0007 [Bacteroides thetaiotaomicron VPI-5482] 130 PDB1018 28-118 -8.220 12  5o9z_I mol:protein length:312 Pre-mRNA-splicing factor 38A
8 gi|29345418|ref|NP_808921.1| hypothetical protein BT_0008 [Bacteroides thetaiotaomicron VPI-5482] 181 PDB1018 6-180 -70.400 18  6g96_B mol:protein length:176 Acetyltransferase
9 gi|29345419|ref|NP_808922.1|(removed signal:1-26) phosphate-binding periplasmic protein precursor, putative ABC transporter BT_0009 [Bacteroides thetaiotaomicron VPI-5482] 343 PDB1018 9-335 -107.000 30  5i84_A mol:protein length:335 Phosphate-binding protein PstS
10 gi|29345420|ref|NP_808923.1| hypothetical protein BT_0010 [Bacteroides thetaiotaomicron VPI-5482] 357 PDB1018 245-357 -8.070 26  5m41_A mol:protein length:757 Nigritoxine
11 gi|29345421|ref|NP_808924.1| hypothetical protein BT_0011 [Bacteroides thetaiotaomicron VPI-5482] 282 PDB1018 196-278 -8.820 26  1mv3_A mol:protein length:213 Myc box dependent interacting protein 1
12 gi|29345422|ref|NP_808925.1|(removed signal:1-34) hypothetical protein BT_0012 [Bacteroides thetaiotaomicron VPI-5482] 354 PDB1018 1-301 -9.120 11  4mr0_A mol:protein length:648 Plasmin and fibronectin-binding protein A
13 gi|29345423|ref|NP_808926.1| hypothetical protein BT_0013 [Bacteroides thetaiotaomicron VPI-5482] 180 PDB1018 19-132 -9.090 13  3ivp_A mol:protein length:126 Putative transposon-related DNA-binding protein
14 gi|29345424|ref|NP_808927.1| two-component system histidine kinase with response regulator receiver domain BT_0014 [Bacteroides thetaiotaomicron VPI-5482] 807 PDB1018 176-562 -45.200 17  4i5s_A mol:protein length:450 Putative histidine kinase CovS; VicK-like protein
300-557 -59.900 26  4q20_A mol:protein length:268 Sensor protein DivL
450-694 -58.200 19  2ayx_A mol:protein length:254 Sensor kinase protein rcsC
15 gi|29345425|ref|NP_808928.1| rteB, two-component system response regulator BT_0015 [Bacteroides thetaiotaomicron VPI-5482] 432 PDB1018 3-432 -117.000 39  4l4u_A mol:protein length:447 Transcriptional regulator (NtrC family)
16 gi|29345426|ref|NP_808929.1| hypothetical protein BT_0016 [Bacteroides thetaiotaomicron VPI-5482] 212 PDB1018 136-210 -7.660 18  3sok_A mol:protein length:151 Fimbrial protein
17 gi|29345427|ref|NP_808930.1| hypothetical protein BT_0017 [Bacteroides thetaiotaomicron VPI-5482] 315 PDB1018 33-86 -7.170 13  2m4l_A mol:protein length:99 protein BT_0846
18 gi|29345428|ref|NP_808931.1| hypothetical protein BT_0018 [Bacteroides thetaiotaomicron VPI-5482] 238 PDB1018 98-151 -7.030 24  2m4l_A mol:protein length:99 protein BT_0846
19 gi|29345429|ref|NP_808932.1| hypothetical protein BT_0019 [Bacteroides thetaiotaomicron VPI-5482] 106 PDB1018 52-104 -7.920 17  2vt1_B mol:protein length:93 SURFACE PRESENTATION OF ANTIGENS PROTEIN SPAS
20 gi|29345430|ref|NP_808933.1| hypothetical protein BT_0020 [Bacteroides thetaiotaomicron VPI-5482] 152 PDB1018 44-150 -6.780 10  5mrw_C mol:protein length:187 Potassium-transporting ATPase KdpC subunit

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Lesley SA, Kuhn P, Godzik A., Deacon AM, Mathews I, Kreusch A, Spraggon G, Klock HE, McMullan D, Shin T, Vincent J, Robb A, Brinen LS, Miller MD, McPhillips TM, Miller MA, Scheibe D, Canaves JM, Guda C, Jaroszewski L, Selby TL, Elsliger MA, Wooley J, Taylor SS, Hodgson KO, Wilson IA, Schultz PG, Stevens RC. Structural genomics of the Thermotoga maritima proteome implemented in a high-throughput structure determination pipeline. Proc Natl Acad Sci U S A. 2002 Sep 3;99(18):11664-9. Epub 2002 Aug 22.