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Filter & download results: Zscore <   Identity ≥(%)   Query residues aligned ≥(%)   Max number of homologs:   Template Database:
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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 4334next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|16082692|ref|NP_395138.1| putative transposase (YPCD1.01) [Yersinia pestis CO92] 340 PfamA32U 1-91 -15.000 8  PF01710.16; P74195_SYNY3/1-119; Transposase
124-244 -14.700 8  PF00665.26; P71644_MYCTU/136-254; Integrase core domain
215-288 -13.900 16  PF13683.6; Q7DB06_CAUVC/199-265; Integrase core domain
2 gi|16082693|ref|NP_395139.1| transposase/IS protein (YPCD1.02) [Yersinia pestis CO92] 259 PfamA32U 5-228 -11.100 12  PF13337.6; R6V945_9CLOT/51-507; Putative ATP-dependent Lon protease
56-235 -73.900 31  PF01695.17; Y4IQ_SINFN/60-238; IstB-like ATP binding protein
3 gi|16082696|ref|NP_395142.1| secretion chaperone (YPCD1.05c) [Yersinia pestis CO92] 130 PfamA32U 7-118 -37.100 17  PF05932.13; Q87P37_VIBPA/6-126; Tir chaperone protein (CesT) family
4 gi|16082697|ref|NP_395143.1| putative outer membrane virulence protein (YPCD1.06) [Yersinia pestis CO92] 219 PfamA32U 1-126 -23.700 100  PF09020.10; YOPE_YERPE/1-126; YopE, N terminal
127-195 -34.100 39  PF03545.13; Q9I788_PSEAE/132-201; Yersinia virulence determinant (YopE)
5 gi|16082698|ref|NP_395144.1| hypothetical protein (YPCD1.07) [Yersinia pestis CO92] 98 PfamA32U 18-98 -8.000 22  PF11200.8; A7AQJ9_BABBO/2-370; Protein of unknown function (DUF2981 topsan)
6 gi|16082699|ref|NP_395145.1| hypothetical protein (YPCD1.08c) [Yersinia pestis CO92] 99 PfamA32U 3-89 -31.600 20  PF05016.15; A0A023JAP0_SALTM/4-92; ParE toxin of type II toxin-antitoxin system, parDE
7 gi|40548796|ref|NP_395146.2| hypothetical protein (YPCD1.09c) [Yersinia pestis CO92] 80 PfamA32U 1-79 -41.700 36  PF03693.14; PARD1_MYCTU/1-80; Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH
8 gi|16082702|ref|NP_395148.1| plasmid-partitioning protein (YPCD1.12c) [Yersinia pestis CO92] 320 PfamA32U 76-156 -26.800 25  PF02195.18; PARB_CHLTR/12-105; ParB-like nuclease domain
157-317 -25.300 11  PF07506.11; Q9F5B9_AGRRH/157-326; RepB plasmid partitioning protein
162-235 -27.600 63  PF18090.1; D7U710_VITVI/142-216; Centromere-binding protein HTH domain
9 gi|16082703|ref|NP_395149.1| plasmid-partitioning protein SopA (YPCD1.13c) [Yersinia pestis CO92] 388 PfamA32U 106-294 -62.200 23  PF13614.6; R5N830_9FIRM/2-184; AAA domain
106-382 -34.300 12  PF07015.11; Q1M9M0_RHIL3/1-231; VirC1 protein
109-348 -61.500 20  PF01656.23; P72976_SYNY3/5-270; CobQ/CobB/MinD/ParA nucleotide binding domain
10 gi|40548797|ref|NP_954989.1| hypothetical protein (YPCD1.14n) [Yersinia pestis CO92] 65 PfamA32U 18-65 -24.900 27  PF13333.6; Q5F880_NEIG1/215-270; Integrase core domain
11 gi|16082705|ref|NP_395151.1| hypothetical protein (YPCD1.15c) [Yersinia pestis CO92] 152 PfamA32U 23-78 -25.100 21  PF13276.6; Q1WUI0_LACS1/209-271; HTH-like domain
99-152 -11.300 11  PF02914.15; TRA_HAEIN/267-485; Bacteriophage Mu transposase
12 gi|16082706|ref|NP_395152.1| hypothetical protein (YPCD1.16c) [Yersinia pestis CO92] 107 PfamA32U 8-83 -40.600 44  PF01527.20; G3XCY0_PSEAE/3-78; Transposase
13 gi|16082708|ref|NP_395154.1| Yop targeting protein (YPCD1.19c) [Yersinia pestis CO92] 182 PfamA32U 33-137 -20.000 15  PF15644.6; R4M122_9ACTN/808-932; Papain fold toxin 1, glutamine deamidase
14 gi|16082709|ref|NP_395155.1| Yop targeted effector (YPCD1.20) [Yersinia pestis CO92] 322 PfamA32U 103-320 -75.000 100  PF03543.14; YOPT_YERPE/103-320; Yersinia/Haemophilus virulence surface antigen
15 gi|16082710|ref|NP_395156.1| YopT chaperone (YPCD1.21) [Yersinia pestis CO92] 132 PfamA32U 8-114 -31.300 15  PF05932.13; Q87P37_VIBPA/6-126; Tir chaperone protein (CesT) family
16 gi|16082711|ref|NP_395157.1| hypothetical protein (YPCD1.22c) [Yersinia pestis CO92] 129 PfamA32U 74-124 -7.260 18  PF09871.9; F7XP05_METZD/16-103; Uncharacterized protein conserved in archaea (DUF2098 topsan)
17 gi|16082712|ref|NP_395158.1| hypothetical protein (YPCD1.23) [Yersinia pestis CO92] 139 PfamA32U 2-113 -8.200 21  PF10682.9; UL40_HCMVM/7-220; Glycoprotein of human cytomegalovirus HHV-5
18 gi|16082715|ref|NP_395161.1| secreted effector protein (YPCD1.26c) [Yersinia pestis CO92] 409 PfamA32U 136-263 -20.400 18  PF14580.6; H3BFR2_LATCH/1-175; Leucine-rich repeat
19 gi|16082716|ref|NP_395162.1| secreted effector protein (YPCD1.28c) [Yersinia pestis CO92] 306 PfamA32U 13-306 -98.300 100  PF05844.12; O68699_YERPE/13-306; YopD protein
20 gi|16082717|ref|NP_395163.1| secreted effector protein (YPCD1.29c) [Yersinia pestis CO92] 401 PfamA32U 108-396 -13.500 9  PF05844.12; O68699_YERPE/13-306; YopD protein

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.