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# Query Length Result vs. Range Score %id Covered by template(s)
1 IDP00001 aldehyde-alcohol dehydrogenase BA_4599 [Bacillus anthracis str. Ames] 867 VFDB 18-427 -38.500 15  [E] COG0014 Gamma-glutamyl phosphate reductase
413-864 -101.000 34  [C] KOG3857 Alcohol dehydrogenase, class IV
452-867 -103.000 49  [C] COG1454 Alcohol dehydrogenase, class IV
2 IDP00002 surface layer protein, (pxo1-54) GBAA_pXO1_0079 [Bacillus anthracis str. 'Ames Ancestor'] 404 VFDB 58-218 -5.820 [K] COG1802 Transcriptional regulators
3 IDP00003 gene: gerXC; spore germination protein xc, (pxo1-112) GBAA_pXO1_0158 [Bacillus anthracis str. 'Ames Ancestor'] 317 VFDB 1-316 -9.480 [M] COG3317 Uncharacterized lipoprotein
4 IDP00004 Chromosomal replication initiator protein dnaA BA_0001 [Bacillus anthracis str. Ames] 446 VFDB 3-446 -121.000 42  [L] COG0593 ATPase involved in DNA replication initiation
5 IDP00005 internalin, putative BA_0552 [Bacillus anthracis str. Ames] 1070 VFDB 3-891 -63.900 12  [S] COG4886 Leucine-rich repeat (LRR) protein
6 IDP00006 immune inhibitor A metalloprotease BA_0672 [Bacillus anthracis str. Ames] 799 VFDB 1-799 -135.000 32  [S] COG4412 Uncharacterized protein conserved in bacteria
7 IDP00007 gene: racE-1; glutamate racemase BA_0847 [Bacillus anthracis str. Ames] 276 VFDB 2-265 -82.000 26  [M] COG0796 Glutamate racemase
8 IDP00008 gene: cysG; uroporphyrin-III C-methyltransferase BA_1445 [Bacillus anthracis str. Ames] 258 VFDB 2-257 -98.100 38  [H] COG0007 Uroporphyrinogen-III methylase
9 IDP00009 3-dehydroquinate synthase BA_1538 [Bacillus anthracis str. Ames] 363 VFDB 1-354 -96.400 36  [E] COG0337 3-dehydroquinate synthetase
10 IDP00010 uroporphyrin-III C-methyltransferase, putative BA_2144 [Bacillus anthracis str. Ames] 474 VFDB 2-269 -82.000 36  [H] COG0007 Uroporphyrinogen-III methylase
244-468 -34.400 15  [H] COG1587 Uroporphyrinogen-III synthase
11 IDP00011 alcohol dehydrogenase, iron-containing BA_2222 [Bacillus anthracis str. Ames] 392 VFDB 1-386 -99.500 33  [C] COG1454 Alcohol dehydrogenase, class IV
12 IDP00012 3-phosphoshikimate 1-carboxyvinyltransferase (5-enolpyruvylshikimate-3-phosphate synthase) (EPSP synthase) (EPSPS) BA_2953 [Bacillus anthracis str. Ames] 429 VFDB 1-427 -90.800 23  [E] COG0128 5-enolpyruvylshikimate-3-phosphate synthase
13 IDP00013 LPXTG-motif cell wall anchor domain protein BA_3254 [Bacillus anthracis str. Ames] 372 VFDB 3-369 -29.400 [S] COG1511 Predicted membrane protein
38-316 -32.800 10  [Z] KOG1003 Actin filament-coating protein tropomyosin
14 IDP00014 Protein recA (Recombinase A) BA_3915 [Bacillus anthracis str. Ames] 343 VFDB 1-340 -88.100 60  [L] COG0468 RecA/RadA recombinase
15 IDP00015 UDP-N-acetylenolpyruvoylglucosamine reductase 1 (UDP-N-acetylmuramate dehydrogenase 1) BA_4048 [Bacillus anthracis str. Ames] 301 VFDB 1-301 -108.000 62  [M] COG0812 UDP-N-acetylmuramate dehydrogenase
16 IDP00016 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase) (Meso-diaminopimelate-adding enzyme) (Meso-A2pm-adding enzyme) (UDP-N-acetylmuramyl-tripeptide synthetase) (UDP-MurNAc-tripeptide synthetase) BA_4053 [Bacillus anthracis str. Ames] 491 VFDB 1-488 -124.000 42  [M] COG0769 UDP-N-acetylmuramyl tripeptide synthase
17 IDP00017 gene: ribBA; Riboflavin biosynthesis protein ribBA [Includes: 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase); GTP cyclohydrolase-2 (GTP cyclohydrolase II)] BA_4333 [Bacillus anthracis str. Ames] 397 VFDB 2-397 -97.200 50  [H] KOG1284 Bifunctional GTP cyclohydrolase II/3,4-dihydroxy-2butanone-4-phosphate synthase
18 IDP00018 gene: racE-2; glutamate racemase BA_4717 [Bacillus anthracis str. Ames] 269 VFDB 2-262 -82.200 25  [M] COG0796 Glutamate racemase
19 IDP00019 gene: pykA-2; pyruvate kinase BA_4843 [Bacillus anthracis str. Ames] 585 VFDB 1-472 -122.000 41  [G] COG0469 Pyruvate kinase
475-585 -27.300 63  [T] COG3848 Phosphohistidine swiveling domain
20 IDP00020 UDP-N-acetylenolpyruvoylglucosamine reductase 2 (UDP-N-acetylmuramate dehydrogenase 2) BA_5315 [Bacillus anthracis str. Ames] 305 VFDB 3-302 -105.000 40  [M] COG0812 UDP-N-acetylmuramate dehydrogenase

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Li Z, and Godzik A. Modeling and Analyzing Three-Dimensional Structures of Human Disease Proteins Pacific Symposium on Biocomputing 11:439-450(2006) [PDF]