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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 7380next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 IDP00001 aldehyde-alcohol dehydrogenase BA_4599 [Bacillus anthracis str. Ames] 867 HGM_OVER 603-703 -2.380 15  PB044863 Q5LB69_BACFN/1-105 PB044863; Pfam-B_44863;
2 IDP00002 surface layer protein, (pxo1-54) GBAA_pXO1_0079 [Bacillus anthracis str. 'Ames Ancestor'] 404 HGM_OVER 21-206 -2.930 15  PB009233 Q7MX23_PORGI/1-175 PB009233; Pfam-B_9233;
3 IDP00003 gene: gerXC; spore germination protein xc, (pxo1-112) GBAA_pXO1_0158 [Bacillus anthracis str. 'Ames Ancestor'] 317 HGM_OVER 1-109 -7.860 14  PB029229 gi|150007903|ref|YP_001302646.1| hypothetical protein BDI_1263 [Parabacteroides distasonis ATCC 8503]gi|149936327|gb|ABR43024.1| conserved hypothetical protein [Parabacteroides distasonis ATCC 8503]
4 IDP00004 Chromosomal replication initiator protein dnaA BA_0001 [Bacillus anthracis str. Ames] 446 HGM_OVER 169-353 -3.560 HGC00816 gi|163609134|dbj|BABG01026932.1|1.0 TMP01075;
5 IDP00005 internalin, putative BA_0552 [Bacillus anthracis str. Ames] 1070 HGM_OVER 519-789 -3.680 PB022815 A4DEQ0_LISMO/1-452 PB022815; Pfam-B_22815;
6 IDP00006 immune inhibitor A metalloprotease BA_0672 [Bacillus anthracis str. Ames] 799 HGM_OVER 216-410 -5.590 PB005346 A0R807_PELPD/1-258 PB005346; Pfam-B_5346;
7 IDP00007 gene: racE-1; glutamate racemase BA_0847 [Bacillus anthracis str. Ames] 276 HGM_OVER 10-118 -3.960 20  PB012991 Q2RHT0_MOOTA/1-175 PB012991; Pfam-B_12991;
8 IDP00008 gene: cysG; uroporphyrin-III C-methyltransferase BA_1445 [Bacillus anthracis str. Ames] 258 HGM_OVER 42-233 -4.150 HGC00166 gi|163579340|dbj|BABE01005762.1|1.0 TMP00473;
9 IDP00009 3-dehydroquinate synthase BA_1538 [Bacillus anthracis str. Ames] 363 HGM_OVER 76-165 -3.610 17  PB010473 Q8A4J5_BACTN/121-234 PB010473; Pfam-B_10473;
10 IDP00010 uroporphyrin-III C-methyltransferase, putative BA_2144 [Bacillus anthracis str. Ames] 474 HGM_OVER 43-233 -3.980 HGC00166 gi|163579340|dbj|BABE01005762.1|1.0 TMP00473;
11 IDP00011 alcohol dehydrogenase, iron-containing BA_2222 [Bacillus anthracis str. Ames] 392 HGM_OVER 40-89 -2.880 16  PB009661 _Gut.Meta.Jp.0000785_ gi|162567239|dbj|BAAU01000237.1||2 (- 3549:4008~0 complete)
12 IDP00012 3-phosphoshikimate 1-carboxyvinyltransferase (5-enolpyruvylshikimate-3-phosphate synthase) (EPSP synthase) (EPSPS) BA_2953 [Bacillus anthracis str. Ames] 429 HGM_OVER 316-405 -2.740 15  PB162020 _JGI.0344610_ 2004040329 [Human Gut Community Subject 8]
13 IDP00013 LPXTG-motif cell wall anchor domain protein BA_3254 [Bacillus anthracis str. Ames] 372 HGM_OVER 59-190 -5.690 12  PB202086 Q8G498_BIFLO/2-200 PB202086; Pfam-B_202086;
14 IDP00014 Protein recA (Recombinase A) BA_3915 [Bacillus anthracis str. Ames] 343 HGM_OVER 63-161 -5.710 14  PB044863 Q5LB69_BACFN/1-105 PB044863; Pfam-B_44863;
15 IDP00015 UDP-N-acetylenolpyruvoylglucosamine reductase 1 (UDP-N-acetylmuramate dehydrogenase 1) BA_4048 [Bacillus anthracis str. Ames] 301 HGM_OVER 41-80 -4.140 PB009661 _Gut.Meta.Jp.0000785_ gi|162567239|dbj|BAAU01000237.1||2 (- 3549:4008~0 complete)
16 IDP00016 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase) (Meso-diaminopimelate-adding enzyme) (Meso-A2pm-adding enzyme) (UDP-N-acetylmuramyl-tripeptide synthetase) (UDP-MurNAc-tripeptide synthetase) BA_4053 [Bacillus anthracis str. Ames] 491 HGM_OVER 336-419 -3.250 15  PB031792 gi|154174791|ref|YP_001409041.1| flavodoxin family protein [Campylobacter curvus 525.92]gi|112804021|gb|EAU01365.1| flavodoxin family protein [Campylobacter curvus 525.92]
17 IDP00017 gene: ribBA; Riboflavin biosynthesis protein ribBA [Includes: 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase); GTP cyclohydrolase-2 (GTP cyclohydrolase II)] BA_4333 [Bacillus anthracis str. Ames] 397 HGM_OVER 236-371 -4.080 14  PB001025 Q1QFV3_NITHX/1-288 PB001025; Pfam-B_1025;
18 IDP00018 gene: racE-2; glutamate racemase BA_4717 [Bacillus anthracis str. Ames] 269 HGM_OVER 7-115 -3.950 17  PB012991 Q2RHT0_MOOTA/1-175 PB012991; Pfam-B_12991;
19 IDP00019 gene: pykA-2; pyruvate kinase BA_4843 [Bacillus anthracis str. Ames] 585 HGM_OVER 107-310 -2.610 12  PB021133 Q64YN4_BACFR/1-310 PB021133; Pfam-B_21133;
20 IDP00020 UDP-N-acetylenolpyruvoylglucosamine reductase 2 (UDP-N-acetylmuramate dehydrogenase 2) BA_5315 [Bacillus anthracis str. Ames] 305 HGM_OVER 70-273 -4.630 PB001823 Q5L7Q9_BACFN/1-326 PB001823; Pfam-B_1823;

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Li Z, and Godzik A. Modeling and Analyzing Three-Dimensional Structures of Human Disease Proteins Pacific Symposium on Biocomputing 11:439-450(2006) [PDF]