FFAS03 list of results S.cerevisiae / VFDB

Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 21-40 of 8069 < prev page next page >

# Query Length Result vs. Range Score %id Covered by template(s)
21 gi|6319264|ref|NP_009347.1| Acetyl-coA synthetase isoform which, along with Acs2p, is the nuclear source of acetyl-coA for histone acetlyation; expressed during growth on nonfermentable carbon sources and under aerobic conditions; Acs1p (YAL054C) [Saccharomyces cerevisiae] 713 VFDB 28-713 -170.000 43 [I] KOG1175 Acyl-CoA synthetase
22 gi|6319265|ref|NP_009348.1|(removed signalp:1-22) Putative FAD transporter; required for uptake of FAD into endoplasmic reticulum; involved in cell wall maintenance; Flc2p (YAL053W) [Saccharomyces cerevisiae] 761 VFDB 2-160 -20.300 17 [R] KOG4680 Uncharacterized conserved protein, contains ML domain
23 gi|50593114|ref|NP_009349.2| Oleate-activated transcription factor, acts alone and as a heterodimer with Pip2p; activates genes involved in beta-oxidation of fatty acids and peroxisome organization and biogenesis; Oaf1p (YAL051W) [Saccharomyces cerevisiae] 500 VFDB 4-499 -13.700 7 [K] KOG4216 Steroid hormone nuclear receptor
38-180 -13.900 12 [K] KOG3815 Transcription factor Doublesex
24 gi|50593114|ref|NP_009349.2| Oleate-activated transcription factor, acts alone and as a heterodimer with Pip2p; activates genes involved in beta-oxidation of fatty acids and peroxisome organization and biogenesis; Oaf1p (YAL051W) [Saccharomyces cerevisiae] 500 VFDB 4-394 -6.380 8 [Z] KOG2053 Mitochondrial inheritance and actin cytoskeleton organization protein
25 gi|50593114|ref|NP_009349.2| Oleate-activated transcription factor, acts alone and as a heterodimer with Pip2p; activates genes involved in beta-oxidation of fatty acids and peroxisome organization and biogenesis; Oaf1p (YAL051W) [Saccharomyces cerevisiae] 500 VFDB 208-347 -6.620 10 [S] COG1422 Predicted membrane protein
26 gi|50593114|ref|NP_009349.2| Oleate-activated transcription factor, acts alone and as a heterodimer with Pip2p; activates genes involved in beta-oxidation of fatty acids and peroxisome organization and biogenesis; Oaf1p (YAL051W) [Saccharomyces cerevisiae] 297 VFDB 2-97 -7.450 11 [S] COG1422 Predicted membrane protein
27 gi|6319267|ref|NP_009350.1| Cytoplasmic protein of unknown function, potential Hsp82p interactor; null mutant displays decreased frequency of mitochondrial genome loss (petite formation); Aim2p (YAL049C) [Saccharomyces cerevisiae] 246 VFDB 1-246 -104.000 100 [R] KOG3043 Predicted hydrolase related to dienelactone hydrolase
28 gi|6319268|ref|NP_009351.1| Evolutionarily-conserved tail-anchored outer mitochondrial membrane GTPase which regulates mitochondrial morphology; cells lacking Gem1p contain collapsed, globular, or grape-like mitochondria; not required for pheromone-induced cell death; Gem1p (YAL048C) [Saccharomyces cerevisiae] 662 VFDB 2-661 -140.000 28 [V] KOG1707 Predicted Ras related/Rac-GTP binding protein
29 gi|6319269|ref|NP_009352.1| Component of the cytoplasmic Tub4p (gamma-tubulin) complex, binds spindle pole bodies and links them to microtubules; has roles in astral microtubule formation and stabilization; Spc72p (YAL047C) [Saccharomyces cerevisiae] 622 VFDB 10-618 -11.700 11 [U] KOG4809 Rab6 GTPase-interacting protein involved in endosome-to-TGN transport
30 gi|6319270|ref|NP_009353.1| Putative protein of unknown function; null mutant displays increased frequency of mitochondrial genome loss (petite formation); Aim1p (YAL046C) [Saccharomyces cerevisiae] 118 VFDB 38-118 -51.100 29 [T] KOG3348 BolA (bacterial stress-induced morphogen)-related protein
31 gi|12621476|ref|NP_075206.1| Putative protein of unknown function; similar to S. pombe uvi31 which is a putative DNA repair protein; Yal044w-ap (YAL044W-A) [Saccharomyces cerevisiae] 110 VFDB 9-110 -57.700 33 [T] COG0271 Stress-induced morphogen (activity unknown)
32 gi|37362609|ref|NP_009355.2| H subunit of the mitochondrial glycine decarboxylase complex, required for the catabolism of glycine to 5,10-methylene-THF; expression is regulated by levels of levels of 5,10-methylene-THF in the cytoplasm; Gcv3p (YAL044C) [Saccharomyces cerevisiae] 170 VFDB 5-143 -66.600 32 [E] KOG3373 Glycine cleavage system H protein (lipoate-binding)
39-169 -67.200 38 [E] COG0509 Glycine cleavage system H protein (lipoate-binding)
33 gi|6319273|ref|NP_009356.1| Subunit of holo-CPF, a multiprotein complex and functional homolog of mammalian CPSF, required for the cleavage and polyadenylation of mRNA and snoRNA 3' ends; involved in pre-tRNA processing; binds to the phosphorylated CTD of RNAPII; Pta1p (YAL043C) [Saccharomyces cerevisiae] 785 VFDB 1-783 -11.400 9 [YU] KOG1241 Karyopherin (importin) beta 1
34 gi|6319274|ref|NP_009358.1| Protein localized to COPII-coated vesicles, forms a complex with Erv41p; involved in the membrane fusion stage of transport; Erv46p (YAL042W) [Saccharomyces cerevisiae] 415 VFDB 1-414 -120.000 31 [U] KOG2667 COPII vesicle protein
35 gi|6319276|ref|NP_009359.1| Guanine nucleotide exchange factor (GEF or GDP-release factor) for Cdc42p; required for polarity establishment and maintenance, and mutants have morphological defects in bud formation and shmooing; Cdc24p (YAL041W) [Saccharomyces cerevisiae] 854 VFDB 156-822 -75.800 15 [F] KOG2070 Guanine nucleotide exchange factor
270-853 -45.000 14 [T] COG5422 RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases
36 gi|6319277|ref|NP_009360.1| G1 cyclin involved in cell cycle progression; activates Cdc28p kinase to promote the G1 to S phase transition; plays a role in regulating transcription of the other G1 cyclins, CLN1 and CLN2; regulated by phosphorylation and proteolysis; Cln3p (YAL040C) [Saccharomyces cerevisiae] 580 VFDB 1-578 -22.700 9 [R] KOG0835 Cyclin L
2-378 -74.600 17 [D] COG5024 Cyclin
5-413 -64.800 13 [D] KOG0655 G1/S-specific cyclin E
37 gi|6319278|ref|NP_009361.1| Cytochrome c heme lyase (holocytochrome c synthase), attaches heme to apo-cytochrome c (Cyc1p or Cyc7p) in the mitochondrial intermembrane space; human ortholog may have a role in microphthalmia with linear skin defects (MLS); Cyc3p (YAL039C) [Saccharomyces cerevisiae] 269 VFDB 5-263 -77.500 36 [CO] KOG3996 Holocytochrome c synthase/heme-lyase
38 gi|6319279|ref|NP_009362.1| Pyruvate kinase, functions as a homotetramer in glycolysis to convert phosphoenolpyruvate to pyruvate, the input for aerobic (TCA cycle) or anaerobic (glucose fermentation) respiration; Cdc19p (YAL038W) [Saccharomyces cerevisiae] 500 VFDB 12-500 -126.000 39 [G] KOG2323 Pyruvate kinase
39 gi|33438756|ref|NP_878040.1| Putative protein of unknown function; Yal037c-ap (YAL037C-A) [Saccharomyces cerevisiae] 30 VFDB 1-26 -2.620 23 [Z] KOG3756 Pinin (desmosome-associated protein)
40 gi|6319280|ref|NP_009363.1| Putative protein of unknown function; (YAL037W) [Saccharomyces cerevisiae] 267 VFDB 12-210 -14.400 9 [V] KOG1717 Dual specificity phosphatase

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#	Query	Length	Result vs.	Range	Score	%id	Covered by template(s)
21	`gi\|6319264\|ref\|NP_009347.1\| Acetyl-coA synthetase isoform which, along with Acs2p, is the nuclear source of acetyl-coA for histone acetlyation; expressed during growth on nonfermentable carbon sources and under aerobic conditions; Acs1p (YAL054C) [Saccharomyces cerevisiae]`	`713`	`VFDB`	`28-713`	`-170.000`	`43`	`[I] KOG1175 Acyl-CoA synthetase`
22	`gi\|6319265\|ref\|NP_009348.1\|(removed signalp:1-22) Putative FAD transporter; required for uptake of FAD into endoplasmic reticulum; involved in cell wall maintenance; Flc2p (YAL053W) [Saccharomyces cerevisiae]`	`761`	`VFDB`	`2-160`	`-20.300`	`17`	`[R] KOG4680 Uncharacterized conserved protein, contains ML domain`
23	`gi\|50593114\|ref\|NP_009349.2\| Oleate-activated transcription factor, acts alone and as a heterodimer with Pip2p; activates genes involved in beta-oxidation of fatty acids and peroxisome organization and biogenesis; Oaf1p (YAL051W) [Saccharomyces cerevisiae]`	`500`	`VFDB`	`4-499`	`-13.700`	`7`	`[K] KOG4216 Steroid hormone nuclear receptor`
				`38-180`	`-13.900`	`12`	`[K] KOG3815 Transcription factor Doublesex`
24	`gi\|50593114\|ref\|NP_009349.2\| Oleate-activated transcription factor, acts alone and as a heterodimer with Pip2p; activates genes involved in beta-oxidation of fatty acids and peroxisome organization and biogenesis; Oaf1p (YAL051W) [Saccharomyces cerevisiae]`	`500`	`VFDB`	`4-394`	`-6.380`	`8`	`[Z] KOG2053 Mitochondrial inheritance and actin cytoskeleton organization protein`
25	`gi\|50593114\|ref\|NP_009349.2\| Oleate-activated transcription factor, acts alone and as a heterodimer with Pip2p; activates genes involved in beta-oxidation of fatty acids and peroxisome organization and biogenesis; Oaf1p (YAL051W) [Saccharomyces cerevisiae]`	`500`	`VFDB`	`208-347`	`-6.620`	`10`	`[S] COG1422 Predicted membrane protein`
26	`gi\|50593114\|ref\|NP_009349.2\| Oleate-activated transcription factor, acts alone and as a heterodimer with Pip2p; activates genes involved in beta-oxidation of fatty acids and peroxisome organization and biogenesis; Oaf1p (YAL051W) [Saccharomyces cerevisiae]`	`297`	`VFDB`	`2-97`	`-7.450`	`11`	`[S] COG1422 Predicted membrane protein`
27	`gi\|6319267\|ref\|NP_009350.1\| Cytoplasmic protein of unknown function, potential Hsp82p interactor; null mutant displays decreased frequency of mitochondrial genome loss (petite formation); Aim2p (YAL049C) [Saccharomyces cerevisiae]`	`246`	`VFDB`	`1-246`	`-104.000`	`100`	`[R] KOG3043 Predicted hydrolase related to dienelactone hydrolase`
28	`gi\|6319268\|ref\|NP_009351.1\| Evolutionarily-conserved tail-anchored outer mitochondrial membrane GTPase which regulates mitochondrial morphology; cells lacking Gem1p contain collapsed, globular, or grape-like mitochondria; not required for pheromone-induced cell death; Gem1p (YAL048C) [Saccharomyces cerevisiae]`	`662`	`VFDB`	`2-661`	`-140.000`	`28`	`[V] KOG1707 Predicted Ras related/Rac-GTP binding protein`
29	`gi\|6319269\|ref\|NP_009352.1\| Component of the cytoplasmic Tub4p (gamma-tubulin) complex, binds spindle pole bodies and links them to microtubules; has roles in astral microtubule formation and stabilization; Spc72p (YAL047C) [Saccharomyces cerevisiae]`	`622`	`VFDB`	`10-618`	`-11.700`	`11`	`[U] KOG4809 Rab6 GTPase-interacting protein involved in endosome-to-TGN transport`
30	`gi\|6319270\|ref\|NP_009353.1\| Putative protein of unknown function; null mutant displays increased frequency of mitochondrial genome loss (petite formation); Aim1p (YAL046C) [Saccharomyces cerevisiae]`	`118`	`VFDB`	`38-118`	`-51.100`	`29`	`[T] KOG3348 BolA (bacterial stress-induced morphogen)-related protein`
31	`gi\|12621476\|ref\|NP_075206.1\| Putative protein of unknown function; similar to S. pombe uvi31 which is a putative DNA repair protein; Yal044w-ap (YAL044W-A) [Saccharomyces cerevisiae]`	`110`	`VFDB`	`9-110`	`-57.700`	`33`	`[T] COG0271 Stress-induced morphogen (activity unknown)`
32	`gi\|37362609\|ref\|NP_009355.2\| H subunit of the mitochondrial glycine decarboxylase complex, required for the catabolism of glycine to 5,10-methylene-THF; expression is regulated by levels of levels of 5,10-methylene-THF in the cytoplasm; Gcv3p (YAL044C) [Saccharomyces cerevisiae]`	`170`	`VFDB`	`5-143`	`-66.600`	`32`	`[E] KOG3373 Glycine cleavage system H protein (lipoate-binding)`
				`39-169`	`-67.200`	`38`	`[E] COG0509 Glycine cleavage system H protein (lipoate-binding)`
33	`gi\|6319273\|ref\|NP_009356.1\| Subunit of holo-CPF, a multiprotein complex and functional homolog of mammalian CPSF, required for the cleavage and polyadenylation of mRNA and snoRNA 3' ends; involved in pre-tRNA processing; binds to the phosphorylated CTD of RNAPII; Pta1p (YAL043C) [Saccharomyces cerevisiae]`	`785`	`VFDB`	`1-783`	`-11.400`	`9`	`[YU] KOG1241 Karyopherin (importin) beta 1`
34	`gi\|6319274\|ref\|NP_009358.1\| Protein localized to COPII-coated vesicles, forms a complex with Erv41p; involved in the membrane fusion stage of transport; Erv46p (YAL042W) [Saccharomyces cerevisiae]`	`415`	`VFDB`	`1-414`	`-120.000`	`31`	`[U] KOG2667 COPII vesicle protein`
35	`gi\|6319276\|ref\|NP_009359.1\| Guanine nucleotide exchange factor (GEF or GDP-release factor) for Cdc42p; required for polarity establishment and maintenance, and mutants have morphological defects in bud formation and shmooing; Cdc24p (YAL041W) [Saccharomyces cerevisiae]`	`854`	`VFDB`	`156-822`	`-75.800`	`15`	`[F] KOG2070 Guanine nucleotide exchange factor`
				`270-853`	`-45.000`	`14`	`[T] COG5422 RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases`
36	`gi\|6319277\|ref\|NP_009360.1\| G1 cyclin involved in cell cycle progression; activates Cdc28p kinase to promote the G1 to S phase transition; plays a role in regulating transcription of the other G1 cyclins, CLN1 and CLN2; regulated by phosphorylation and proteolysis; Cln3p (YAL040C) [Saccharomyces cerevisiae]`	`580`	`VFDB`	`1-578`	`-22.700`	`9`	`[R] KOG0835 Cyclin L`
				`2-378`	`-74.600`	`17`	`[D] COG5024 Cyclin`
				`5-413`	`-64.800`	`13`	`[D] KOG0655 G1/S-specific cyclin E`
37	`gi\|6319278\|ref\|NP_009361.1\| Cytochrome c heme lyase (holocytochrome c synthase), attaches heme to apo-cytochrome c (Cyc1p or Cyc7p) in the mitochondrial intermembrane space; human ortholog may have a role in microphthalmia with linear skin defects (MLS); Cyc3p (YAL039C) [Saccharomyces cerevisiae]`	`269`	`VFDB`	`5-263`	`-77.500`	`36`	`[CO] KOG3996 Holocytochrome c synthase/heme-lyase`
38	`gi\|6319279\|ref\|NP_009362.1\| Pyruvate kinase, functions as a homotetramer in glycolysis to convert phosphoenolpyruvate to pyruvate, the input for aerobic (TCA cycle) or anaerobic (glucose fermentation) respiration; Cdc19p (YAL038W) [Saccharomyces cerevisiae]`	`500`	`VFDB`	`12-500`	`-126.000`	`39`	`[G] KOG2323 Pyruvate kinase`
39	`gi\|33438756\|ref\|NP_878040.1\| Putative protein of unknown function; Yal037c-ap (YAL037C-A) [Saccharomyces cerevisiae]`	`30`	`VFDB`	`1-26`	`-2.620`	`23`	`[Z] KOG3756 Pinin (desmosome-associated protein)`
40	`gi\|6319280\|ref\|NP_009363.1\| Putative protein of unknown function; (YAL037W) [Saccharomyces cerevisiae]`	`267`	`VFDB`	`12-210`	`-14.400`	`9`	`[V] KOG1717 Dual specificity phosphatase`