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Filter & download results: Zscore <   Identity ≥(%)   Query residues aligned ≥(%)   Max number of homologs:   Template Database:
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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 4053next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|15894240|ref|NP_347589.1| hypothetical protein (CA_C0953) [Clostridium acetobutylicum ATCC 824] 132 PDB1018 26-132 -9.770 12  3kwt_A mol:protein length:148 Munc13-1
2 gi|15895268|ref|NP_348617.1| ABC-type transport system, ATPase component (CA_C1998) [Clostridium acetobutylicum ATCC 824] 224 PDB1018 1-224 -108.000 39  5lj9_A mol:protein length:231 Macrolide export ATP-binding/permease protein MacB
3 gi|15895079|ref|NP_348428.1| ribosome-binding factor A (CA_C1803) [Clostridium acetobutylicum ATCC 824] 121 PDB1018 1-118 -61.900 19  1pa4_A mol:protein length:116 Probable ribosome-binding factor A
4 gi|15896238|ref|NP_349587.1| dimethyladenosine transferase (CA_C2986) [Clostridium acetobutylicum ATCC 824] 276 PDB1018 2-274 -103.000 31  4jxj_A mol:protein length:276 Ribosomal RNA small subunit methyltransferase A
5 gi|15894673|ref|NP_348022.1| phosphoribosylglycinamide formyltransferase (CA_C1394) [Clostridium acetobutylicum ATCC 824] 204 PDB1018 1-204 -81.700 36  3p9x_A mol:protein length:211 phosphoribosylglycinamide formyltransferase
6 gi|15894664|ref|NP_348013.1| Alpha-ribazole-5'-phosphate phosphatase, CobC (CA_C1385) [Clostridium acetobutylicum ATCC 824] 191 PDB1018 1-191 -92.600 29  4ij5_A mol:protein length:211 Phosphoserine phosphatase 1
7 gi|15894369|ref|NP_347718.1| Beta-glucosidase family protein (CA_C1084) [Clostridium acetobutylicum ATCC 824] 474 PDB1018 2-471 -150.000 60  4ze4_A mol:protein length:485 Putative 6-phospho-beta-galactobiosidase
8 gi|15896898|ref|NP_350247.1| alpha/beta fold family hydrolase (CA_C3665) [Clostridium acetobutylicum ATCC 824] 265 PDB1018 4-263 -76.700 32  3pf8_A mol:protein length:270 Cinnamoyl esterase
9 gi|15895531|ref|NP_348880.1| ATP-dependent exonuclease synthesis protein AddB (CA_C2263) [Clostridium acetobutylicum ATCC 824] 500 PDB1018 1-500 -107.000 29  3u44_B mol:protein length:1166 ATP-dependent helicase/deoxyribonuclease subunit B
10 gi|15895531|ref|NP_348880.1| ATP-dependent exonuclease synthesis protein AddB (CA_C2263) [Clostridium acetobutylicum ATCC 824] 500 PDB1018 1-497 -96.800 30  3u44_B mol:protein length:1166 ATP-dependent helicase/deoxyribonuclease subunit B
11 gi|15895531|ref|NP_348880.1| ATP-dependent exonuclease synthesis protein AddB (CA_C2263) [Clostridium acetobutylicum ATCC 824] 500 PDB1018 1-500 -120.000 32  3u44_B mol:protein length:1166 ATP-dependent helicase/deoxyribonuclease subunit B
12 gi|15895531|ref|NP_348880.1| ATP-dependent exonuclease synthesis protein AddB (CA_C2263) [Clostridium acetobutylicum ATCC 824] 403 PDB1018 1-399 -104.000 35  3u44_B mol:protein length:1166 ATP-dependent helicase/deoxyribonuclease subunit B
13 gi|15895492|ref|NP_348841.1| chemotaxis protein CheW (CA_C2224) [Clostridium acetobutylicum ATCC 824] 147 PDB1018 2-147 -72.200 32  2ho9_A mol:protein length:167 Chemotaxis protein cheW
14 gi|15894672|ref|NP_348021.1| phosphoribosylaminoimidazole synthetase (CA_C1393) [Clostridium acetobutylicum ATCC 824] 332 PDB1018 2-331 -98.100 49  3p4e_A mol:protein length:349 Phosphoribosylformylglycinamidine cyclo-ligase
15 gi|15893880|ref|NP_347229.1| riboflavin synthase subunit alpha (CA_C0591) [Clostridium acetobutylicum ATCC 824] 213 PDB1018 1-197 -94.100 39  4e0f_A mol:protein length:210 Riboflavin synthase subunit alpha
16 gi|15893578|ref|NP_346927.1| hypothetical protein (CA_C0286) [Clostridium acetobutylicum ATCC 824] 244 PDB1018 9-244 -8.080 9  5kk2_E mol:protein length:323 Voltage-dependent calcium channel gamma-2 subunit
17 gi|15896862|ref|NP_350211.1| oligopeptide ABC transporter, ATPase component (CA_C3628) [Clostridium acetobutylicum ATCC 824] 322 PDB1018 8-322 -109.000 32  4fwi_B mol:protein length:334 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component
18 gi|15895331|ref|NP_348680.1| segregation and condensation protein A (CA_C2061) [Clostridium acetobutylicum ATCC 824] 249 PDB1018 1-165 -71.900 41  3w6j_A mol:protein length:174 ScpA
173-249 -27.900 32  5h66_C mol:protein length:80 Segregation and condensation protein A
19 gi|15894096|ref|NP_347445.1| hydrogenase formation factor (hypE) (CA_C0809) [Clostridium acetobutylicum ATCC 824] 335 PDB1018 2-335 -96.500 46  2z1t_A mol:protein length:343 Hydrogenase expression/formation protein HypE
20 gi|15895945|ref|NP_349294.1| DNA helicase (CA_C2687) [Clostridium acetobutylicum ATCC 824] 714 PDB1018 1-605 -133.000 33  4cdg_A mol:protein length:673 BLOOM SYNDROME PROTEIN
3-714 -31.900 13  5v9x_A mol:protein length:877 ATP-dependent DNA helicase

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Bourne PE, Allerston CK, Krebs W, Li W, Shindyalov IN, Godzik A.,Friedberg I, Liu T, Wild D, Hwang S, Ghahramani Z, Chen L, Westbrook J. The status of structural genomics defined through the analysis of current targets and structures. Pac Symp Biocomput. 2004;:375-86.