FFAS03 list of results H.pylori / HGM

Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 1653 next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|15644635|ref|NP_206803.1| transcription antitermination protein NusB (HP0001) [Helicobacter pylori 26695] 138 HGM_OVER 4-137 -5.930 6 HGC00422 gi|163631722|dbj|BABG01004545.1|2.0 TMP00397;
2 gi|15644636|ref|NP_206804.1| 6,7-dimethyl-8-ribityllumazine synthase (HP0002) [Helicobacter pylori 26695] 156 HGM_OVER 12-143 -4.540 10 PB035451 Q3Z7G7_DEHE1/1-135 PB035451; Pfam-B_35451;
3 gi|15644637|ref|NP_206805.1| 2-dehydro-3-deoxyphosphooctonate aldolase (HP0003) [Helicobacter pylori 26695] 276 HGM_OVER 14-113 -3.470 8 HGC00991 gi|163600283|dbj|BABF01000984.1|3.0 TMP01348;
4 gi|15644638|ref|NP_206806.1| carbonic anhydrase (icfA) (HP0004) [Helicobacter pylori 26695] 221 HGM_OVER 77-126 -4.040 12 HGC00991 gi|163600283|dbj|BABF01000984.1|3.0 TMP01348;
5 gi|15644639|ref|NP_206807.1| orotidine 5'-phosphate decarboxylase (HP0005) [Helicobacter pylori 26695] 227 HGM_OVER 176-226 -1.960 9 PB009661 _Gut.Meta.Jp.0000785_ gi|162567239|dbj|BAAU01000237.1||2 (- 3549:4008~0 complete)
6 gi|15644640|ref|NP_206808.1| pantoate--beta-alanine ligase (HP0006) [Helicobacter pylori 26695] 276 HGM_OVER 8-81 -2.790 23 PB031792 gi|154174791|ref|YP_001409041.1| flavodoxin family protein [Campylobacter curvus 525.92]gi|112804021|gb|EAU01365.1| flavodoxin family protein [Campylobacter curvus 525.92]
7 gi|15646197|ref|NP_206811.1| outer membrane protein (HP0009) [Helicobacter pylori 26695] 634 HGM_OVER 434-606 -6.660 14 PB004718 Q5LIA4_BACFN/1-189 PB004718; Pfam-B_4718;
8 gi|15644643|ref|NP_206812.1| chaperonin GroEL (HP0010) [Helicobacter pylori 26695] 546 HGM_OVER 77-177 -3.040 14 HGC00711 gi|162743779|dbj|BAAZ01020484.1|1.0 TMP00907;
9 gi|15644644|ref|NP_206813.1| co-chaperonin GroES (HP0011) [Helicobacter pylori 26695] 118 HGM_OVER 70-106 -3.810 13 PB048420 Q64S71_BACFR/1-165 PB048420; Pfam-B_48420;
10 gi|15644645|ref|NP_206814.1| DNA primase (HP0012) [Helicobacter pylori 26695] 559 HGM_OVER 7-121 -3.180 13 HGC00991 gi|163600283|dbj|BABF01000984.1|3.0 TMP01348;
11 gi|15644646|ref|NP_206815.1| hypothetical protein (HP0013) [Helicobacter pylori 26695] 350 HGM_OVER 1-116 -2.470 10 PB040621 Q8A865_BACTN/1-132 PB040621; Pfam-B_40621;
12 gi|15644647|ref|NP_206816.1| hypothetical protein (HP0014) [Helicobacter pylori 26695] 275 HGM_OVER 4-129 -2.470 9 HGC00024 gi|162813637|dbj|BABA01031072.1|2.0 TMP01508;
13 gi|15644648|ref|NP_206817.1| hypothetical protein (HP0015) [Helicobacter pylori 26695] 93 HGM_OVER 20-93 -5.320 12 PB006154 _JGI.0331794_ 2004021056 [Human Gut Community Subject 7]
14 gi|15644649|ref|NP_206818.1| hypothetical protein (HP0016) [Helicobacter pylori 26695] 87 HGM_OVER 7-63 -3.850 12 PB006205 Q3F123_BACTI/1-181 PB006205; Pfam-B_6205;
15 gi|15644650|ref|NP_206819.1| virB4 homolog (virB4) (HP0017) [Helicobacter pylori 26695] 787 HGM_OVER 11-201 -14.000 10 HGC00816 gi|163609134|dbj|BABG01026932.1|1.0 TMP01075;
16 gi|15644651|ref|NP_206820.1| hypothetical protein (HP0018) [Helicobacter pylori 26695] 469 HGM_OVER 1-113 -7.860 10 PB045072 _Gut.Meta.Jp.0111663_ gi|163310555|dbj|BABD01000145.1||3 (+ 1662:2028~0 complete)
17 gi|15644652|ref|NP_206821.1| chemotaxis protein (cheV) (HP0019) [Helicobacter pylori 26695] 321 HGM_OVER 195-287 -3.890 16 PB001572 gi|163816107|ref|ZP_02207475.1| hypothetical protein COPEUT_02291 [Coprococcus eutactus ATCC 27759]gi|158448527|gb|EDP25522.1| hypothetical protein COPEUT_02291 [Coprococcus eutactus ATCC 27759]
18 gi|15644653|ref|NP_206822.1| carboxynorspermidine decarboxylase (nspC) (HP0020) [Helicobacter pylori 26695] 405 HGM_OVER 83-216 -2.860 7 PB002534 Q8H9W1_9CAUD/1-397 PB002534; Pfam-B_2534;
19 gi|15644654|ref|NP_206823.1| lipid A 1-phosphatase (HP0021) [Helicobacter pylori 26695] 190 HGM_OVER 40-190 -3.640 11 PB032242 Q8FLW6_COREF/1-257 PB032242; Pfam-B_32242;
20 gi|15644655|ref|NP_206824.1| lipid A phosphoethanolamine transferase (HP0022) [Helicobacter pylori 26695] 521 HGM_OVER 224-427 -3.370 10 PB007733 A3U921_9FLAO/1-209 PB007733; Pfam-B_7733;

FFAS is supported by the NIH grant R01-GM087218-01

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#	Query	Length	Result vs.	Range	Score	%id	Covered by template(s)
1	`gi\|15644635\|ref\|NP_206803.1\| transcription antitermination protein NusB (HP0001) [Helicobacter pylori 26695]`	`138`	`HGM_OVER`	`4-137`	`-5.930`	`6`	`HGC00422 gi\|163631722\|dbj\|BABG01004545.1\|2.0 TMP00397;`
2	`gi\|15644636\|ref\|NP_206804.1\| 6,7-dimethyl-8-ribityllumazine synthase (HP0002) [Helicobacter pylori 26695]`	`156`	`HGM_OVER`	`12-143`	`-4.540`	`10`	`PB035451 Q3Z7G7_DEHE1/1-135 PB035451; Pfam-B_35451;`
3	`gi\|15644637\|ref\|NP_206805.1\| 2-dehydro-3-deoxyphosphooctonate aldolase (HP0003) [Helicobacter pylori 26695]`	`276`	`HGM_OVER`	`14-113`	`-3.470`	`8`	`HGC00991 gi\|163600283\|dbj\|BABF01000984.1\|3.0 TMP01348;`
4	`gi\|15644638\|ref\|NP_206806.1\| carbonic anhydrase (icfA) (HP0004) [Helicobacter pylori 26695]`	`221`	`HGM_OVER`	`77-126`	`-4.040`	`12`	`HGC00991 gi\|163600283\|dbj\|BABF01000984.1\|3.0 TMP01348;`
5	`gi\|15644639\|ref\|NP_206807.1\| orotidine 5'-phosphate decarboxylase (HP0005) [Helicobacter pylori 26695]`	`227`	`HGM_OVER`	`176-226`	`-1.960`	`9`	`PB009661 _Gut.Meta.Jp.0000785_ gi\|162567239\|dbj\|BAAU01000237.1\|\|2 (- 3549:4008~0 complete)`
6	`gi\|15644640\|ref\|NP_206808.1\| pantoate--beta-alanine ligase (HP0006) [Helicobacter pylori 26695]`	`276`	`HGM_OVER`	`8-81`	`-2.790`	`23`	`PB031792 gi\|154174791\|ref\|YP_001409041.1\| flavodoxin family protein [Campylobacter curvus 525.92]gi\|112804021\|gb\|EAU01365.1\| flavodoxin family protein [Campylobacter curvus 525.92]`
7	`gi\|15646197\|ref\|NP_206811.1\| outer membrane protein (HP0009) [Helicobacter pylori 26695]`	`634`	`HGM_OVER`	`434-606`	`-6.660`	`14`	`PB004718 Q5LIA4_BACFN/1-189 PB004718; Pfam-B_4718;`
8	`gi\|15644643\|ref\|NP_206812.1\| chaperonin GroEL (HP0010) [Helicobacter pylori 26695]`	`546`	`HGM_OVER`	`77-177`	`-3.040`	`14`	`HGC00711 gi\|162743779\|dbj\|BAAZ01020484.1\|1.0 TMP00907;`
9	`gi\|15644644\|ref\|NP_206813.1\| co-chaperonin GroES (HP0011) [Helicobacter pylori 26695]`	`118`	`HGM_OVER`	`70-106`	`-3.810`	`13`	`PB048420 Q64S71_BACFR/1-165 PB048420; Pfam-B_48420;`
10	`gi\|15644645\|ref\|NP_206814.1\| DNA primase (HP0012) [Helicobacter pylori 26695]`	`559`	`HGM_OVER`	`7-121`	`-3.180`	`13`	`HGC00991 gi\|163600283\|dbj\|BABF01000984.1\|3.0 TMP01348;`
11	`gi\|15644646\|ref\|NP_206815.1\| hypothetical protein (HP0013) [Helicobacter pylori 26695]`	`350`	`HGM_OVER`	`1-116`	`-2.470`	`10`	`PB040621 Q8A865_BACTN/1-132 PB040621; Pfam-B_40621;`
12	`gi\|15644647\|ref\|NP_206816.1\| hypothetical protein (HP0014) [Helicobacter pylori 26695]`	`275`	`HGM_OVER`	`4-129`	`-2.470`	`9`	`HGC00024 gi\|162813637\|dbj\|BABA01031072.1\|2.0 TMP01508;`
13	`gi\|15644648\|ref\|NP_206817.1\| hypothetical protein (HP0015) [Helicobacter pylori 26695]`	`93`	`HGM_OVER`	`20-93`	`-5.320`	`12`	`PB006154 _JGI.0331794_ 2004021056 [Human Gut Community Subject 7]`
14	`gi\|15644649\|ref\|NP_206818.1\| hypothetical protein (HP0016) [Helicobacter pylori 26695]`	`87`	`HGM_OVER`	`7-63`	`-3.850`	`12`	`PB006205 Q3F123_BACTI/1-181 PB006205; Pfam-B_6205;`
15	`gi\|15644650\|ref\|NP_206819.1\| virB4 homolog (virB4) (HP0017) [Helicobacter pylori 26695]`	`787`	`HGM_OVER`	`11-201`	`-14.000`	`10`	`HGC00816 gi\|163609134\|dbj\|BABG01026932.1\|1.0 TMP01075;`
16	`gi\|15644651\|ref\|NP_206820.1\| hypothetical protein (HP0018) [Helicobacter pylori 26695]`	`469`	`HGM_OVER`	`1-113`	`-7.860`	`10`	`PB045072 _Gut.Meta.Jp.0111663_ gi\|163310555\|dbj\|BABD01000145.1\|\|3 (+ 1662:2028~0 complete)`
17	`gi\|15644652\|ref\|NP_206821.1\| chemotaxis protein (cheV) (HP0019) [Helicobacter pylori 26695]`	`321`	`HGM_OVER`	`195-287`	`-3.890`	`16`	`PB001572 gi\|163816107\|ref\|ZP_02207475.1\| hypothetical protein COPEUT_02291 [Coprococcus eutactus ATCC 27759]gi\|158448527\|gb\|EDP25522.1\| hypothetical protein COPEUT_02291 [Coprococcus eutactus ATCC 27759]`
18	`gi\|15644653\|ref\|NP_206822.1\| carboxynorspermidine decarboxylase (nspC) (HP0020) [Helicobacter pylori 26695]`	`405`	`HGM_OVER`	`83-216`	`-2.860`	`7`	`PB002534 Q8H9W1_9CAUD/1-397 PB002534; Pfam-B_2534;`
19	`gi\|15644654\|ref\|NP_206823.1\| lipid A 1-phosphatase (HP0021) [Helicobacter pylori 26695]`	`190`	`HGM_OVER`	`40-190`	`-3.640`	`11`	`PB032242 Q8FLW6_COREF/1-257 PB032242; Pfam-B_32242;`
20	`gi\|15644655\|ref\|NP_206824.1\| lipid A phosphoethanolamine transferase (HP0022) [Helicobacter pylori 26695]`	`521`	`HGM_OVER`	`224-427`	`-3.370`	`10`	`PB007733 A3U921_9FLAO/1-209 PB007733; Pfam-B_7733;`