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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 21-40 of 5436< prev pagenext page >

# Query Length Result vs. Range Score %id Covered by template(s)
21 gi|30260216|ref|NP_842593.1| hypothetical protein (BA_0022) [Bacillus anthracis str. Ames] 73 VFDB 15-73 -6.720 [S] COG4226 Uncharacterized protein encoded in hypervariable junctions of pilus gene clusters
22 gi|30260217|ref|NP_842594.1| sigma-k factor processing regulatory protein BofA (BA_0024) [Bacillus anthracis str. Ames] 89 VFDB 1-86 -7.510 12  [S] KOG4556 Predicted membrane protein
23 gi|30260218|ref|NP_842595.1| csfB protein, putative (BA_0025) [Bacillus anthracis str. Ames] 59 VFDB 1-35 -7.520 25  [K] COG1996 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger)
24 gi|30260219|ref|NP_842596.1| lysine decarboxylase (BA_0026) [Bacillus anthracis str. Ames] 473 VFDB 1-472 -108.000 21  [E] COG1982 Arginine/lysine/ornithine decarboxylases
25 gi|30260220|ref|NP_842597.1| thymidylate kinase (BA_0027) [Bacillus anthracis str. Ames] 208 VFDB 1-207 -97.500 54  [F] COG0125 Thymidylate kinase
26 gi|30260221|ref|NP_842598.1| DNA polymerase III subunit delta' (BA_0028) [Bacillus anthracis str. Ames] 327 VFDB 2-326 -72.700 25  [L] COG2812 DNA polymerase III, gamma/tau subunits
27 gi|30260222|ref|NP_842599.1| hypothetical protein (BA_0029) [Bacillus anthracis str. Ames] 278 VFDB 7-268 -100.000 40  [S] COG1774 Uncharacterized homolog of PSP1
28 gi|30260223|ref|NP_842600.1| DNA replication intiation control protein YabA (BA_0030) [Bacillus anthracis str. Ames] 116 VFDB 1-116 -48.500 31  [S] COG4467 Uncharacterized protein conserved in bacteria
29 gi|30260224|ref|NP_842601.1| hypothetical protein (BA_0031) [Bacillus anthracis str. Ames] 246 VFDB 3-245 -92.900 46  [R] COG4123 Predicted O-methyltransferase
30 gi|30260225|ref|NP_842602.1| GIY-YIG nuclease superfamily protein (BA_0032) [Bacillus anthracis str. Ames] 96 VFDB 1-92 -59.100 32  [L] COG2827 Predicted endonuclease containing a URI domain
31 gi|30260226|ref|NP_842603.1| hypothetical protein (BA_0033) [Bacillus anthracis str. Ames] 291 VFDB 2-291 -96.200 39  [R] COG0313 Predicted methyltransferases
32 gi|30260227|ref|NP_842604.1| transition state transcriptional regulatory protein AbrB (BA_0034) [Bacillus anthracis str. Ames] 94 VFDB 1-50 -35.300 58  [K] COG2002 Regulators of stationary/sporulation gene expression
33 gi|30260228|ref|NP_842605.1| methionyl-tRNA synthetase (BA_0036) [Bacillus anthracis str. Ames] 660 VFDB 2-589 -176.000 24  [J] KOG1247 Methionyl-tRNA synthetase
417-659 -56.200 19  [J] KOG2241 tRNA-binding protein
34 gi|30260229|ref|NP_842606.1| TatD family deoxyribonuclease (BA_0037) [Bacillus anthracis str. Ames] 255 VFDB 2-255 -113.000 31  [L] COG0084 Mg-dependent DNase
35 gi|30260230|ref|NP_842607.1| primase-related protein (BA_0038) [Bacillus anthracis str. Ames] 185 VFDB 2-178 -58.900 46  [L] COG1658 Small primase-like proteins (Toprim domain)
36 gi|30260231|ref|NP_842608.1| dimethyladenosine transferase (BA_0039) [Bacillus anthracis str. Ames] 292 VFDB 1-292 -94.900 25  [J] COG0030 Dimethyladenosine transferase (rRNA methylation)
37 gi|30260232|ref|NP_842609.1| yabG protein (BA_0040) [Bacillus anthracis str. Ames] 287 VFDB 2-285 -7.270 12  [U] COG0681 Signal peptidase I
38 gi|30260233|ref|NP_842610.1| veg protein (BA_0041) [Bacillus anthracis str. Ames] 86 VFDB 1-85 -54.900 52  [S] COG4466 Uncharacterized protein conserved in bacteria
39 gi|30260234|ref|NP_842611.1| small, acid-soluble spore protein (BA_0042) [Bacillus anthracis str. Ames] 59 VFDB 1-56 -5.210 14  [S] COG3619 Predicted membrane protein
40 gi|30260235|ref|NP_842612.1| 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (BA_0043) [Bacillus anthracis str. Ames] 289 VFDB 1-289 -96.300 27  [I] COG1947 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rychlewski L, Zhang B, Godzik A. Functional insights from structural predictions: analysis of the Escherichia coli genome. Protein Sci. 1999 Mar;8(3):614-24.