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Query: gi|30260203|ref|NP_842580.1|(removed signalp:1-28) D-alanyl-D-alanine carboxypeptidase (BA_0009) [Bacillus anthracis str. Ames], from B.anthracis

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst ETGSALNIEAGAAILVEANSGKILYQKNADELLSIASMTKMMSEYLVHEAVDKGKFKWDQKIKVSEYAYKVSQDASLSNVALENGGSYTVKELYEAMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKELGLKNYKFVNSTGLTNKDLKGMHPEGTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIPKKEFRPEKEKFAMSNWNWMLKGLVKEYDGVDGLKTGSTPEAGDCFTGTVERNGMRFISVVIKTSSHTARFDETKKLYDYGFANFEMKQMYKKGSSVKGQETVRVENAKDKDVAVQTKQAISLPVPKGSKEVYKTELKESSKGQEAPIKKGAALGQMVITPKDTNDPGFLTGKSLQVDLVTTSEVEEANWFTRAMRGIGSFFSGIWNSAVDTVKGWFLast
1 -117.000IDP01881 gene: dacA; D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str. `Ames Ancestor`] GBAA0009 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  100  29ETGSALNIEAGAAILVEANSGKILYQKNADELLSIASMTKMMSEYLVHEAVDKGKFKWDQKIKVSEYAYKVSQDASLSNVALENGGSYTVKELYEAMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKELGLKNYKFVNSTGLTNKDLKGMHPEGTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIPKKEFRPEKEKFAMSNWNWMLKGLVKEYDGVDGLKTGSTPEAGDCFTGTVERNGMRFISVVIKTSSHTARFDETKKLYDYGFANFEMKQMYKKGSSVKGQETVRVENAKDKDVAVQTKQAISLPVPKGSKEVYKTELKESSKGQEAPIKKGAALGQMVITPKDTNDPGFLTGKSLQVDLVTTSEVEEANWFTRAMRGIGSFFSGIWNSAVDTVKGWF 435
2 -110.000IDP01885 D-alanyl-D-alanine carboxypeptidase, putative [Bacillus anthracis str. `Ames Ancestor`] GBAA5639 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  44  24HAEEKIHIEAAAALLFDADTGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSNVPFEKGRQYTVRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFVNATGLNNTDLKGKHPEGTDPNAENSMSARDMGILSKAMITKYPEMLEDTKQRFRNFPNHPKPIRMENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMDERFTESRELIEYGFNNFEKQKLKVDK-----NNTLSVAQGKEDQVTVAPEKEITVIAKKGSKNPYKIGTEVDDGHLVAPIKKDAKVGSITLESTDK-YGFLDGSNSMKVTAKTTEEVEKANWFVLTMRSIGDFFSNLWSKV........ 422
3 -103.000IDP01407 D-alanyl-D-alanine carboxypeptidase VC0947 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  29  30VTPDAPQIAAKGYVLMDYHSGKVLAEKEMDTKLSPASLTKMMTSYVIGQEVKRGNISLNDDVVISKNAWAKNFPDS-SKMFVEVGTTVKVSDLNRGIIIQSGNDACVAMAEHVAGTEDAFVDLMNAWASSLGMKNSHFTNSHGLD--------------DPNLYSTPYDLALLGQALIRXVPEEYAIYSEQKFTY----NGITQYNRNGLLWD---KSMNVDGIKTGHTSGAGYNLVSSATEGNMRLVAVVMGTDNENARKAESKKLLSYGFRFFETVAPHKAGETFV---NETIWMGDKDTIALGVDKDTYVTLPRGQAKDLTASFVLEKQ-LKAPLKKGDIVGTLYYQLAGNDI--------AQYPLLALEDVQEGSLFSRLWDYLVLLFKSWF........... 391
4 -102.000IDP01487 D-alanyl-D-alanine carboxypeptidase VCA0270 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  27  29.VPEPPQLAANGYVLIDFHTGKVLVEHNAHQKLNPASLTKLMTSYVAGQEMKRGNIHADDQVRISNNAWAKKF-PDSSKMFIEVGTYVNLMDLYRGLIVQSGNDASVAIAEHVAGSEGAFVSLMNSWAQQLGMNNSSFANPHGLD--------------NPALYSTPYDIALLGRAIIRDLPEIYPLYSELSFTY----NGITQHNRNGLLRD---RSMNVDGMKTGYTSGAGYSLASSATSGEMRLISVVMGSKSVKSREAESKQLLSYGFRFYETVTPHQKDTVIQ---NQRLWYGDKNEVALGSADTVYLTLPRSDVKKLNAVIQLDQN-LEAPIAKGDVVGSIFYYIDEEKV--------GEAKLVSQESVEQGGIFKRLMDWFKLLFSGWF........... 389
5 -101.000IDP00982 gene: dacD; D-alanyl-D-alanine carboxypeptidase STM2062 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  27  30.APQPPAIDAGAWVLMDYTTGQVLTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRISPDDIVTVGRDAWAKDNPVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQPQFVAMMNSYVKKLNLQDTHFETVHGLD--------------APGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTW----NGITQQNRNGLLWD---KTMHIDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGAKSSKGREEQARKLLQWGQQNFATVQILHSGKKVG---SERIWYGDKEKIALGTEQDFWMALPKAEIPHIKAKYVLDRKELEAPIAAHQQVGEIELYDRDKLI--------AQWPLVTLESVGKGGMFSRLSDYFQHK................ 389
6 -101.000IDP02327 gene: dacC; D-alanyl-D-alanine carboxypeptidase [Yersinia pestis CO92] YPO1320 [Yersinia pestis CO92]  ali follow..  30  62DDPAAPQIDAKAYVLMDFNSGKVLAEGNPDLRLDPASLTKIMSSYVIGQSIKAGKIQPDDLVTVGKDAWATGNPAGSSLMFLKPGDRVKVSDLNKGIVIQSGNDASIALADYVAGSQDSFVGLMNNYAKALGLSNTHFMTVHGLD--------------SPGQYSTARDMALLGQALIRDVPEEYALHKEKEFTF----NKIRQTNRNRLLWNS---SLNVDGMKTGYTNGAGYNLVASATDGPMRLISVVLGAPSDKVRFSESEKLLTWGFRFYETVVPIKSTKPFV---TEKVWLGDNSQVELGVAEDAAITIPKGQMKNLKASYTLNQTELRAPLAKHQVVGTIDFQLNGKTI--------EQRPLVVLNEVKEGGIFSRFWDYVMMKLNQWFGGI........ 430
7 -99.600IDP02523 gene: dacF; D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str. `Ames Ancestor`] GBAA4297 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  38  35ETTPKLAEQASSAIVIEQDTGKVLFDKNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASEHAASMGG----SQIFLEPGEEMTVNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKDLGLKNTHFQNPTGLP--------------AKDHYSTANDMAIMAKELMK-YPLIRKYTGKYEDYLRETDKKFWLVNTNKLV----RFYPGVDGVKTGFTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTKLLDYAFGQYMTKKLYTRGEKIK---TVQVGKGKKEKVDLVASDNVSLLMKKGENMDKVKQEVIAEKKVKAPIKKGDALGTLVIKKDKDVLL--------KQTIVAKEDVAAASWWELFKRSFGMFSTS............. 395
8 -97.400IDP05772 gene: dacD; penicillin binding protein 6b [Escherichia coli O157:H7 EDL933] Z3171 [Escherichia coli O157:H7 str. EDL933]  ali follow..  28  65.SPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLD--------------APGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTW----NGITQQNRNGLLWD---KTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFTTVQILHRGKKVG---TERIWYGDKENIALGTEQEFWMVLPKAEIPHIKAKYTLDGKELTAPISAHQRVGEIELYDRDKQV--------AHWPLVTLESVGEGSMFSRLSDYFHHK................ 424
9 -95.600IDP02286 gene: dacD; D-alanyl-D-alanine carboxypeptidase (penicillin binding protein) family protein [Francisella tularensis subsp. tularensis SCHU S4] FTT1029 [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  24  46.RPANIELDAPAWVTMDYRTGDIVSEKNMDVRRAPASLTKIMTSYIVASEIKAGNLSWDTMIPISENAASTGG----SKMYVKAGAKVSVRNLVTGMDVVSGNDATIALAEYIGGTTQAFTDLMNQTAKAIGMNNTHFANPDGLP--------------GGEQYTTAHDMALLARSYIYNFPEAYKVYDDKGLVWNA----TKQDSVSIAD----RKQCLPKFDRATGNVIESYTVKDLDDQAKDKCISVVLGTTSSAKRDSESAKLLRYALSKYENVLLYKANSPVTISADNIPNAKAGQKLTVASNQNIYKTVPKTYVPYLKQGIEFNPN-LNAPIKTGQTVGNLVITLGDT------KEEIASIPVVAMNNVSQKGWW.......................... 444
10 -95.200IDP02399 D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. `Ames Ancestor`] GBAA2559 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  29  26LYVNGPIIQAKSAILIDANSGEVVYKKNEENSIQSATLSKLMTEYIVLEQLDKGNIQLDEVVKISNEVFRAET----SPIQVTSKDKTTVRDLLHALLLTGNNRSTLALAEHIAGNEDNFTQLMNEKAKQLKLSQSPFLNATGMNNGT-----------NKLSTTTAIEVGKLATRLVTDFPDVLNVTKLTSYQFT---KDTKVFNTNKMIYSLNIKLQGVDGLQTSFSTNSNYSFVSTAKRGDTRLISVILDADNENSTFIETKKLLQYGFDPSSYSALQAFKDAVT---SWAVLLQFKNLIIQTLLIFFIITILMLLHIRQKKSEDFN............................................................................. 338
11 -90.100IDP02617 D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. `Ames Ancestor`] GBAA1286 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  23  40PPKEGPNVFSQFATTIDAKTGDILYDKNAHHRAFPASMTKVLTAILLME-----HTKPEDQFTFSQLALDQEKSN--YQIEFQPGETINRNTALMILMVLSANDVSYAIAERIGGSVENFANMMNERAKQLGATDSHFVTPNGLH--------------DPNHYTTPYDMAMITRGVQK-YPEILQAMNTKRTTVTTSRQTVSIFNKSTYF-----ENPFSIGGKTGFTNEARNTLVLLNEKDGNRIINVVMASQRPE-IYEDLKQMADYSFGQFVKQTVLDKHSWHQ---KTTYLNK---DIDSELEKSAELMLKKDEVKNVKTTFRAADSLYHKGIHRGEVVGAVDITKNNQTIA--------TVNVLSKEDVTFAMPKKDTIEPEVNESNVKIISIGIGAAILF 408
12 -88.700IDP02666 D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. `Ames Ancestor`] GBAA1490 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  25  23YAKMNSNVSARNAVLMEQHSGRVLYGKAEHEPQKIASITKIMTALLAAE-----SGKMKERVLVSNEAVRVEG----SAIYLKPGQKVKLEDLVYGLMLRSGNDAAQVIAENVGGSIEGFVYLMNEKAKQIRMKDTHFSNPHGLDG-------------DGSHYSSAYDMALLTRYAMGN-ETFKEIFGTKTYKSDSW--DYPWKNKHKLVTS---YYEFATGGKTGFTKKAGRTLVTTASKDGLDLIVVTLSASS---DWDDHMNLFDKGFDRFEQTKVLGQGA-------LAEITEKKYANHVYTKNSFSVPLTEEEKKSVVLKV---ELDKSAKLVDGVKVGKTDVYVGNEKVG--------ERNLFYSKRKLVATTG-MYWNNVKEIFSYMIGVGSD...... 373
13 -86.000IDP05765 hypothetical protein lmo2812 [Listeria monocytogenes EGD-e] lmo2812 [Listeria monocytogenes EGD-e]  ali follow..  35  23.EQPNLYLSANAAAVYSVENGEALYEQNADKVMPIASLSKLMTAFLVLEAVDNNELSWDEKLDLVRLDDPSAV----SLYAITQKRTWSVRDLYSAMLTMSANDAAETLGDRLDGAD--FPKEMNNQAKKLGMSSTTFVSASGLDVD------------GKSAVSTTKDLFLLSSKLISTHPEVLETTSKPTVTTD---KGAKLESTNDLLG----SIQGLDGLKTGFTDEAGYCFIGTAERGGKRVISIVLDAGTAEKRFKDTEKLMEVGFKE..................................................................................................................................... 271
14 -81.200IDP01726 D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. `Ames Ancestor`] GBAA5252 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  30  30VRADQPSITGQYGITIDADTGEILYGKREDERSYPASIAKMMTTLLLLE-----NVKEDEEITVTENAIKT--ESQSKKIKLRAGEKLKRDEALKLMLIISADPIAESIAEHIAGSKNEFVKMMNARAKELGTKHATFKNASGAD--------------ALGNKVSPYDIAMITKEALK-YPVVLEYMNSTRTTLHTSERSPNIANYGREE---LYDDPYAIGSKSGLSALGKYTVVTVDEKDGKRVINVVLSSTR-KQLYPDTKKMAHYAFQQLK................................................................................................................................... 279
15 -80.300IDP95290 D-alanyl-D-alanine endopeptidase [Acinetobacter baumannii ATCC 17978] YP_001083314 [Acinetobacter baumannii ATCC 17978]  ali follow..  25  4..NAQPSVSARAALVMDAQTGEVLYSKNTNASVPIASITKLMTAVVTAD----ARLNMSEEITLEQIDFAGAG-GKNSSSTLRVGDKMNRAEVLLFALMKSENPAAAALARTYPGGRAAFVAAMNAKARALGMNATHYYESTGL---------------DPRNVSSARDLGILASTASQ-YGLIRQFSTTPTYDFNLGYRVLKSNNTNALVRN---GGWNINLSKTGYINEAGRCVVMHTTVNSRPAVIVLLGEPSTQARNNDATNLLGWLSNLPKRI................................................................................................................................. 255
16 -79.800IDP01499 gene: pbpG; D-alanyl-D-alanine endopeptidase VCA0870 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  22  38KTVKKQELSANSALVIDLKTNEIIYSNNPDAVKPIASVTKLMTAIVTLDA----KLPMDAKLPITIKDAK---EMKGVHSRVKIGSEISRKDMLLLTLMSSENRAAASLAHHYPGGYKAFIKAMNAKAKALGMKNTRFVEPTGL---------------SAKNVSTARDLVVLLKASKK-YPLLGKLSATDKKTVTKPRYTLDFRNTNRLVHN---DNWKIDLTKTGFTNAAGHCLVMRTQMGRRQVAFVVLDTKGKLSPVGDANRLRTWIETGKVTPLSSEAKQ-------YKKQRSQEQIAKISDYKS................................................................................................. 316
17 -79.000IDP05345 gene: pbpG; penicillin-binding protein 7 [Escherichia coli O157:H7 EDL933] Z3383 [Escherichia coli O157:H7 str. EDL933]  ali follow..  24  34TTASQPEIASGSAMIVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLDA----RLPLDEKLKVDISQTP---EMKGVYSRVRLNSEISRKDMLLLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSLGMNNTRFVEPTGL---------------SVHNVSTARDLTKLLIASKQ-YPLIGQLSTTREDMATNPTYTLPFRNTNHLVYR---DNWNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVMDAFGKYTHFADASRLRTWIETGKVMPVPAAALSYKK---QKAAQMAAAGQTA....................................................................................................... 310
18 -77.600IDP02740 D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. `Ames Ancestor`] GBAA1950 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  39  56PKYIPPEVDAKAAMIIDASNGDIIYQHNENEAFAPAAQTE------------------------------------GARIPVQVNDTLTVKDLFHALMIESANNSAVALAEHMAKTEKDFVQLMNAKAKQLKMSDAKFANASGLQEPD-----------GSETKMTAADVANLAYHLIKDYPEILEVTHLRQSQLA---NNINVISTNDMLNNKALYIEGIDGLKTGFTDSAGYCFTGTAKQGDTRIITVVMGTKGKTKRFTETNKLMTYAFGLVN................................................................................................................................... 285
19 -71.800IDP91872 gene: vanYD; D,D-carboxypeptidase VanYD [Enterococcus faecium] ACM47285 [Enterococcus faecium]  ali follow..  24  99ANTIDLNIIAANAIVVNKDTDAVLYQKNGTDRIAPASTAKMITALTVLE-----YCSPEEEMRVGAEIEMIH--SDSSTAWLMKGDTLTVRQLLIALMLPSGNDAAYTLAVNTGKTIKIFMDKVNEKARELGVTDSNFVVPDGYD--------------AEGQYTTAYDLAIIAKACLEN-PIISEIVASNTSYEKPNGREVTYNNSNELLPNSPYYRPEVIGLKTGTSSLGGACVVSAAVIDGETYICVAMGSTK-ESRFQDSVDILDKIKAQ..................................................................................................................................... 363
20 -19.700IDP02545 beta-lactamase [Francisella tularensis subsp. tularensis SCHU S4] FTT0611c [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  13  37...........GIYTLNTDDKTNI-KYNESYHFPICSVFKFLLVGAILDYDMHNQGFLDKKIPINQDDIGKL---GYAPITAKNVGKTLTISQLNYAAILSDSPASNILVRELGGLQN-----LNKFIKKLGDNDTIITADE--------PEINYTQPHSNINKTTPKAITKDIYKLAF-------------------GNILDKKHKDIFIKYLQDNNTGANRIKTGTCGQYA--VAIIWPKNQQPIALGILYTNPNDKNAPSNEEII........................................................................................................................................... 271
21 -16.800IDP00042 gene: bla1; beta-lactamase BA_2507 [Bacillus anthracis str. Ames]  ali follow..  15  68...........GVYAIDTGTNQTI-AYRPNERFAFASTYKALAAGVLLQQNSTKKL--DEVITYTKEDLVDYSPVTEKHV----DTGMTLGEIAEAAVRYSDNTAGNILFHKIGGPKG-----YEKALRQMGDRVTMSDRFE--------TELNEAIPGDIRDTSTAKAIATNLKAFTA-------------------GNALPNHKRNILTKWMKGNATGDKLIKSGAGSYGTRNDIAIVWPPNRAPIIIAILSSKDEKGATYDNQLI........................................................................................................................................... 297
22 -12.200IDP06517 beta-lactamase [Enterococcus faecium DO] AFK58557 [Enterococcus faecium DO]  ali follow..  12  79...........IGSIYVKKNNRIIMEKDPSLYYQIGSVQKALTTLLILKQVERGHLSLDTQITIRDLLYMRSGLHRTASPTIPMTDEEVVQFAIQHLKFTDYSLNFTILTIKLTN--QPYEKLLTDDIEPLGLQHTKFYDQVKNSSNHALSYQMSKEDDTGNISMSVYDLNTLFTQVL-------------------SGKLVSKDLLFSLWRENANGHPYSGGVYSGDNNIDSFDTSAIFSKDSQDAIIMESNIKADKTIKLPTADLRN.......................................................................................................................................... 374
23 -11.000IDP02180 putative periplasmic beta-lactamase [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0299 [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  20  33...........TFVFYDGKTWASNDFSRAMETFSPASTFKIFNALI---ALDSGVIKTKKEIFYHYRGEKVFLSSWAQDMNLSSAIKYSNVLAFK------------EVARRIG------IKTMQEYLNKLHYGNAKISKIDTF---------------DNSLKISAKEQAILLFRLSQNSLPF---------------SQEAMNSVKEMIYLKNMENLELFG-KTGFNDEQKIAIVGFVYLKDENKYKAFAKFEDLYKREKILEKYLD.......................................................................................................................................... 247
24 -10.300IDP01247 penicillin-binding protein, putative BA_3214 [Bacillus anthracis str. Ames]  ali follow..  14  60........ETTSVQYALIDNGKLILSGTKDTLYGIGSTSKVYTAAAVMKLVDEGKVDLDASVTLLNHSSGLQGSTLNNAFLFKDNDVYAHDILLQQLSNQNCNDGFTLAEERVSG--MSFTEFLHQKFEPLKLNHTITSQDKWEDEKRAGQYSPTYQGQLPSEMSTAEDVVRFSQIFMGQGKEILSNKAVKAMEQEEYKKGMWPGDSGNSVKLYPFSEYGIKALTKGGDTMLQHATLVVLPEQKMAAA-VLSSGGSSMTNQLLANKLLLARLKEKGTIKDIKPDRSFGKPVKAKVPQDVVKKAGFYGNSYSHFKIEITKKGELFLP................................................................................. 441
25 -10.300IDP01248 penicillin-binding protein, putative BA_3554 [Bacillus anthracis str. Ames]  ali follow..  8  75...........NGSVLVASKDHVILRKTPRTKYRIGSITKTVVAISIMQLKEKGKLNIEDNITLRNLLTHTSGLPDQGKGRVDAASRLKLVTWIGGTGWKYTDYNYMVLAEKITN--KPLAEYVKENITPVEMHESGMGATLPEDIFLAEGYTRKDNEGCGEMYTTVEDMKRLDEAIMNG-----KLLSKQSVLDMFTASPARKYGFSFYTYPDYYHNHGLAGWNT-----------FNNFNWDKKTFVILFSNVQNGMNDTFNQEFRKMANDLIEGNG................................................................................................................................ 376
26 -10.100IDP01209 penicillin-binding protein BA_2650 [Bacillus anthracis str. Ames]  ali follow..  11  21...........SGVILVKEKKGIVYEETLQTRFGIASGCKIFTAIGICQLVENGVITFQTDITIHHLLTHSSGIPDYFDE-TPMYLLKSLKDFLPGSKFHYNNAGFIILGEEQTG--LTFTEYIEKNINPIGMNHSGYFSLDRLPRQTALGYIKDEISSDGGAFITASDMLKFWEALFNY-----EIISQEYTKILLTPHIQVNNNQSYGYGIWIETRENKIFKYHVMGYDPGVSFRSAVYPDLGITLVIPSNKGAGAEKLMIE............................................................................................................................................... 335
27 -9.970IDP95095 beta-lactam binding protein AmpH [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] YP_002918033 [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]  ali follow..  13  49...........TGMALVVIDGNQRVFRQLDSVIRIASLSKLMTSEMLVKLLDQGVVKLNDPLS-----------PPGARVPDWQGKPITLVNLATGSQAAYSNLAFDLLADALA-AGKPYPQLFEEQIRPLGMKDTTFTPSPDQCQRLMIPEKGASPCNNTLAAIGSGGVYSTPGDMMRWMQQFLSSDFYTRSQQADRMQTLIYQRNQLTRVIGMDVPGRADALGLGWVGGGGFITYMAMNPQANVGAFVVVTRSPLTRFNNMSDGIND.......................................................................................................................................... 369
28 -9.620IDP01215 penicillin-binding protein, putative BA_3506 [Bacillus anthracis str. Ames]  ali follow..  11  10EKMNQYSVVGLSLAVIR--DGKLDETATIDSIFNSCSISKFITTILILTLSDLKIVHLDEDVNDRLTSWNIPTNL------FTSQKKVTLRNLLSESEFHYSDANFCIIEILLE-TGKPFNLLLEESIQPLQMKNSTIFSPEDIDKTD-EKYPFYPFAAASGIWTTPTDLSALVIEIIHS................................................................................................................................................................................................................................... 254
29 -9.450IDP00523 gene: ampH; beta-lactamase/D-alanine carboxypeptidase YPO1224 [Yersinia pestis CO92]  ali follow..  14  57........GAVGMALVVIDNNQVVNR-RPDSLIRIASITKLMTSEIMVKLADDGIVKLTDPLKLASHTSGLPREQPGGPQKRPVFTWPTKDNRWQGVKAAYSNLAYDLLADALS-AGKPYAHLLRDKIAPLGMKNTTLTPTAEQCKRLMIGVGSSRAAGSGGIYSTPEDMQHWMQQFLAS--------NSAPKRSAKREQALYFQRGDLVSLKGMDVAGQADALGLGWVGGGGFITYMAMVPEKNIGVFVVVTRSQLTKFSNMSDGVNQ.......................................................................................................................................... 379
30 -9.380IDP91877 gene: fox-4; beta-lactamase class C [Escherichia coli] CAB89086 [Escherichia coli]  ali follow..  16  45........RIPGMAVAVLKDGKAHYFNSEQTLFEIGSVSKTLTATLGAYAAVKGGFELDDKVS-------------APWLKGSAFDGVTMAELATGTHRQYSNPSIGLFGHLAA-LGQPFEQLMSQTLPKLGLHHTYIQVPESAMANYAYGYSKEDKPIRATPKTGSADLLKFVEANMGY................................................................................................................................................................................................................................... 262
31 -9.140IDP02566 gene: adP-2; alkaline d-peptidase [Bacillus anthracis str. `Ames Ancestor`] GBAA3033 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  13  53QVMQETIKIGAPGVLAKTSNKGKISSYKSDYRFRIGSVTKTFTATTVLQLVGENRVQLDDQITIRQLLNHTSGIAEYLKDIMNSKKTYTAEEIVKGKGWSYSNTGYVILGEKITG--NSYAEEIEKRIEPLDLPNTFLPGARGYVKMEETGELKDITYYNPS-ISNADDLNKFFSSLLGG-----KLLKERELKEMLTTVPIEGKGIGDGYGLGIYETKLPNGVSVGHGGSIGFMTFAGGVIGGKHTFAVNVNSLGPVDILTQFDKMMQVEFNK..................................................................................................................................... 388
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

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