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Query: gi|30260207|ref|NP_842584.1| hypothetical protein (BA_0013) [Bacillus anthracis str. Ames], from B.anthracis

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTTAHISGDWRTRYQHVTSFYFKTNHKVWCKDIMSLLHTHIPMIIFIDMKGVNMDLIIQTFPLDGKTLYYVQCPVCKNNRILNSGANVSRIISDDTFRKLCGCTCDVKQTATKVEAPKKVKKEAVKKEAAPKRTGKVLTAVINGKEMTVKEIAEAYDISTSTVRQRINAGKSESEIIAPTKKKLast
1 -7.300IDP01519 hypothetical protein VC2149 VC2149 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  15  1............................................................................................................................MELSPVFARRLYLALLVESLERPNVPKLIEKTGWPRRTIQDVIKA.............. 45
2 -7.230IDP91322 hypothetical protein VV2_0302 [Vibrio vulnificus CMCP6] VV2_0302 [Vibrio vulnificus CMCP6]  ali follow..  15  1..............................................................MDEEILGYLPCSKC------KTPKKIIQGQGKRARFLRARCKCGPDCTGEDIQAYFATYKPLEEVEQMLKPTPEPVTEPVPEPEPQNNKTTTSANSNAAK..................... 95
3 -7.190IDP93919 antidote protein [Yersinia enterocolitica subsp. enterocolitica 8081] YP_001006180 [Yersinia enterocolitica subsp. enterocolitica 8081]  ali follow..  15  2..............................................................................................................................TMFNPPHPGGIIAESLEDLALSINAAARALGVAPSTLSRVMRGESAISPEMA..... 53
4 -6.840IDP90978 hypothetical protein y0549 [Yersinia pestis KIM 10] y0549 [Yersinia pestis KIM10+]  ali follow..  11  1............................................................................................................................MLLSTKQFRHYTLALLLASGKPVDADDIYDKLSCSGPTLTRALKELRETYNA....... 52
5 -5.820IDP95113 two-component response regulator [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] YP_001333743 [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]  ali follow..  17  41..............................AQARQLLHATPPQLVLLDNATSQCSVIFITAASDMETCS----------QAIRNGA-FDYILKPVSWKRLSQSLERFIQFYDQQREWKIVDQQNVDSLYQLQAKNYRVDSGSKGHCFSVDEVVSAAGLSKTTARRYLE............... 201
6 -5.710IDP90419 gene: euo; CHLPS Euo Protein [Chlamydia trachomatis D/UW-3/CX] CT_446 [Chlamydia trachomatis D/UW-3/CX]  ali follow..  2.....................................................................................................................ECLQQDTGVEAEQVQVQQQEENAVPVTSQVSITQAAKLHNVTRQAIYVAIKQKKLKA......... 59
7 -5.610IDP91281 RNA polymerase sigma-70 factor, ECF subfamily [Bacillus anthracis str. Sterne] NT05BA5437 [Bacillus anthracis str. Sterne]  ali follow..  26  125.......................................................................................................................................KTVLVLYYYEQYSYKEMSEILNIPIGTVKYRLNYAKKQ.......... 162
8 -5.570IDP01177 gene: sigA; RNA polymerase sigma-43 factor BA_4515 [Bacillus anthracis str. Ames]  ali follow..  16  179............KFDYRKGFKFSTYATWWIRQAITTIRIPVHMVETINKLIRVQRQLLQDLPSPEEIGEEMDLAPEKVREILKIAVSLETPIGEEDDSHLGDFIEDQEATSPADHAAYELLKEQLEDDTLTDREENVLRGLDDGRTRTLEEVGKVFGVTRERIRQ.................. 350
9 -5.470IDP06257 RNA polymerase sigma factor RpoD [Streptococcus pneumoniae TIGR4] NP_345546 [Streptococcus pneumoniae TIGR4]  ali follow..  15  174............KFDYSKGFKFSTYATWWIRQAITTIRIPVHMVETINKLVREQRNLLQELPTPEQIAERMDMTPDKVREILKIAVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTRIVLREQLDEDTLTDREENVLRGLDDGKMRTLEDVGKVFNVTRERIRQ---EAKALRKLRQPSRSK 361
10 -5.430IDP00414 gene: deoR; DNA-binding transcriptional repressor YPO1322 [Yersinia pestis CO92]  ali follow..  18  2..............................................................................................................................ETRRAERINKLIQALKRSDKIHLKDAANLLRVSEMTIRRDLSAEPTSVIL....... 51

FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 6 0 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Pio F, Pawlowski K, Godzik A. Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics. 2000 Dec;16(12):1105-10.