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Query: gi|30260213|ref|NP_842590.1| DNA polymerase III subunits gamma and tau (BA_0019) [Bacillus anthracis str. Ames], from B.anthracis

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSYQALYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAINCEHAPVAEPCNECPSCLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVEYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRCQRFEFRKISVNDIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDERVTTEDVLAVTGSVSQQYLGNLVECIRENDVSRALRIIDEMMGKGKDPVRFMEDFIYYYRDMLLYQTSPQLEHMLERVMVDEQFRMLSEEMQPEVIYEIIHTLSKGQQEMKWTNHPRIFLEVVMVQLCQQFMMQANGADRLQAIMNRMQQLEKELEQVKKNGVPVGVQQEVKETRAAPKPVRTGSMKIPVGRVNEVLKQAKRQDLEQLKAVWGELLGRLKAYNKVAFAVLLENSEPVAASDDTYVLAFQYEIHCKMASENREAMDTVEQALFELLSKKLNMIAIPKSEWGKIREDFLKREGGSSEESPEKKEDPLIEEAIKLVGQELIEIKELast
1 -116.000IDP90891 gene: dnaX; DNA polymerase III subunits gamma and tau [Yersinia pestis CO92] YPO3122 [Yersinia pestis CO92]  ali follow..  30  1MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGTCANCQEIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRAQLEKVLLAEQITSDARALQLLARAADGSMRDALSLTDQAVSMGQGQVTTVTVSQMLGTLDDEQPLAIIEALVSADGARVMAQIEQAASRGVDWENLLVESLSLLHKIAMVQLLPS-MLDNHYAAIEPRLRELARTLPPADIQLYYQTLLVGRKELAYAPDRRMGVEMTLLRALAFHPKAIIAEPQIAHVAAPSAIADNAVPTSQGGQHRQEPASVPPSSHQEAPPLGAVASSVQLPESTAQLLQARTQLLRIARDPWAAEVNKLQLPK--LVQQLALNAFKQEIEPGNICLHLRSA---QRHLNSASAQKALSDALSELHGNAVTLSVIEDDNRTPLEWRQAIYEEKLAQARQSIIADNNIQTLRRFFDAELDE... 652
2 -110.000IDP90616 DNA polymerase III subunits gamma and tau [Vibrio cholerae O1 biovar eltor str. N16961] VC1054 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  30  1MSYLALARKWRPTRFSEVVGQSHVLTALENALAQNRLHHAYLFSGTRGVGKTTIGRLFAKGLNCETGITATPCGQCATCQEIDQGRFVDLLEIDAASRTKVEDTRELLDNVQYKPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRCLQFHLKPISVENIQQQLDKVLHAEQISSDSKALNLLAHAADGSMRDALSLTDQAIALGNGVVKSDIVAHMLGTLDTDHSLHLLQAISLQTPQAVMDCIETLAQNGVEWDGLLQQLSTQLHRIAMYQALPAT--LDKSLPEASRIESLAKTLAPQDVQLYYQIALKGRQDLPLSPTARIGIEMLMLRMMAFRPSHVSLASVIVPPNTAVTAPTIAAPTSQMAAAAPQPQPVAQSNVSQSSEVTPTQLKKALEHEKTPEMGAKLIEEAVAQDAWSALVQRLETAK--MVEQLALNSAFVR-QGDQISLTLRPS---HAHLHNEKAQQELEQALNHVLGEACSLNITVGQEGETPLERERLYQQKLTSALHSLQTDPNVQFIERRFNAQLDS... 686
3 -72.000IDP91261 DNA polymerase III, delta prime subunit [Bacillus anthracis str. Sterne] NT05BA0041 [Bacillus anthracis str. Sterne]  ali follow..  24  2...........TKTWEQLSAQPIGVKMLMNSIAKERISHAYLLEGEKGTGKFATAIQMAKSFLCSQRNRVEPCHVCTNCKRIDSGNHPNLVKPDGLSIK-KQQIHDLQEEFSKTGLEANKKVYIIEHADRMTANAANALLKFLEEPSSDTTAILLTEQSHQILNTILSRCQVVTFRPLPTESLIRRLQ----DEGI---TVSLSTLAAQLTNSFDEALTLCNDEWFAQARALVIKLCEALEKD--------------KASIFFVQEKWGKHFGEKEQLQQGLDMLLLIYKDLLYVQLGEEDRLVFREQKEMFE----SFSYAQKRIVSALFNILEAKNRINANVNAQLVFEQLVLRLQE........................................................................................................................................................................................................... 326
4 -67.700IDP90924 gene: holB; DNA polymerase III subunit delta` [Yersinia pestis CO92] YPO1606 [Yersinia pestis CO92]  ali follow..  18  1MNW----YPW----------LNAPYRQLVGQHSTGRGHHALLLHSLPGNGEDALIYALSRWLMCQQRQGEKSCGECHSCRLMLAGNHPDWYVLKGKSSIGVELVRQLIDKLYSHAQQGGAKVVWLPHAEVLTDAAANALLKTLEEPPEKTYFLLDCHQPASLLATLRSRCFYWYLACPDTAICLQWLNLQWRKRQIPVEPVAMLAALKLSEGAPLAAERLLQP----ERWSIRSALCSGLREALNRSDLLSLLPQLNHDDAAERLQ------------------LSSLLLDALKWQQGAG--EFAVNQDQLPLVQQLAHIAATPVLLQLAKQLAHCRHQLLSVVNRELLLTEQLLSWETALSTGTYSTLPS............................................................................................................................................................................................... 339
5 -65.000IDP90644 gene: holB; DNA polymerase III subunit delta` [Salmonella typhimurium LT2] STM1201 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  20  1..............MKWYPWLRPAYEKLVESYQAGRGHHALLIQALPGMGDEALCYALSRYLLCQQPEGHKSCGHCRGCQLMQAGTHPDYYTLKGKSSLGVDAVREVSEKLYEHSRLGGAKVVWIADAALLTDAAANALLKTLEEPPEQTWFFLASPEPARLLATLRSRCRLHHLAPPSESYAMSWL-----SREVTASQEALLTALRLNAGSPGAALALLQS----ERWAQREALCQALMDSLHTGDWYAVLTALNHEQAPARLHW-----------------LATLLVDALKRQHGASY---LTNVDADAVVAALAGPLSPARIQAILNDVCHCRDQLLHVTNRELVLTDLILRIEHYLQPGTLLPV................................................................................................................................................................................................. 331
6 -56.700IDP90607 DNA polymerase III subunit delta` [Vibrio cholerae O1 biovar eltor str. N16961] VC2015 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  19  2............SNLNSLYWLVPVWQPWQAGLAAGKISSATLIQASEGVGVESLVELMARTLMCTS-SQSEPCGFCHSCGLMQSGNHPDFHVVKPEKIGTVEQIRQMNRIAQESSQLSGYRLIVIEPADAMNESSANALLKTLEEPAPNCLFILVTSRIKHLLPTIVSRCQRLVLPAPTTALVVEWLK--------GQGITTPAYALHLCADSPLKTRAFMLE-------------------AEKYHELESQLMNALSGDVNAQLKCIAL---IDADLTTHLYWVWCVLTDAQKIHFGVQQDYY------PPASAALAGRFTYSKLHVQTASLERLMEQLNQFSNTELLLLQWLYQFSDEE......................................................................................................................................................................................................... 321
7 -49.200IDP92073 ruvB-like 2 protein, putative [Toxoplasma gondii ME49] TGME49_088860 [Toxoplasma gondii ME49]  ali follow..  16  184.AKMIDALTKEGVTAGDVITIDKSTGKVTRVGRGFSRAKDYDAVGPATRFVQCPEGELQKRKEVVHSVTLHEIDINSRAQGFLALFAGDTGEIKSEVREQIDQK--VADWRAEGKAEVVPGVLFIDEVHMLDIECFSFLNRALEHETSPIVIMATNRGPHGIPLDLLDRSLIIPTQPYEEKDMLKIIELRAEEEDVELEESARLLLCKIAECSLRYALHLITVANLVCGSVVTVQDIRRVYSLFIDVK--RSTQYLVEYQQEFMFSELPGGAPSQSPSQAVRSAGADRQEGLEKTKGSDDGERLDAADDSE........................................................................................................................................................................................................................................................... 506
8 -49.000IDP06086 gene: holB; DNA polymerase III subunit delta` [Helicobacter pylori J99] NP_223870 [Helicobacter pylori J99]  ali follow..  18  2...................................................KNSNRLIYTDNLEES-LEEAASLFKHHIKFYTEIIEKDKKVIKTFNKDKIEHAKEVISKAHLKHSE---LNAFLIAAPSYGVEAQNALLKILEEPPNNVCFIMFAKSPNHVLATIKSRLIKEDLSKLDLKDIYAFLKNL-DKENFDSRENQRERIESLLESIHRHKIPLNEQELQAFDLAIKANSSYYKLSYNLLPLLLSLLSK................................................................................................................................................................................................................................................................................................................... 214
9 -48.300IDP04216 gene: ruvB; Holliday junction DNA helicase B [Salmonella typhimurium LT2] STM1894_1_336 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  18  14IAEDVADRAIRPKLLAEYVGQPQVRSQMEIFIQAAKRRDHLLIFGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVLYPAMEDYQLDIMIGEGPA---------ARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIQRLEFYQVPDLQHIVGRSARHMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGAISAEIAAQALDMLNVD-AEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIE............................................................................................................................................................................................................................................................................. 298
10 -45.900IDP00067 gene: ruvB; holliday junction DNA helicase [Campylobacter jejuni subsp. jejuni NCTC 11168] NT01CJ1369 [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  17  11SFDETYETSLRPSNFDGYIGQESIKKNLNVFIARNECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIEKSGDLA---AILTNLSEGDILFIDEIHRLSPAIEEVLY-PAMEDYRLDIIIGSGPAA--------QTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRSTPRIALRLLKRVRDFADVNDEEIITEKRANEALN--SLGVNELGFDAMDLRYLELLTAAKQKPIGLASIAAALSEDENTIE............................................................................................................................................................................................................................................................................. 294
11 -44.900IDP06190 gene: ruvB; Holliday junction DNA helicase RuvB [Helicobacter pylori J99] NP_223085 [Helicobacter pylori J99]  ali follow..  17  13.FETSQEVSLRPNLWEDFIGQEKIKSNLQISICAAKKRDHMLFFGPPGLGKTSISHIIAKEMETNIKITAAPMIEKSGDLA------AILTNLQAKDILFIDEIHRLSPAIELYPAMEDFRLDIIIGSGPAA--------QTIKIDLPPFTLIGATTRAGMLSNPLRDRFMSFRMQFYSPSELSLIIKKAAAKLNQDIKEESADEIAKRSRGTPRIALRLLKRVRDFALVK--NSSLMDLSITLHALNELGVNELGFDEADLAYLSLLANAQGRPVGLNTIAASMREDEGTIE............................................................................................................................................................................................................................................................................. 295
12 -44.200IDP05235 gene: ruvB; Holliday junction DNA helicase B [Listeria monocytogenes EGD-e] lmo1532 [Listeria monocytogenes EGD-e]  ali follow..  17  13AEEVSFETSLRPQNLSQYIGQDKVKNNLTVFIEAATLRDHVLLYGPPGLGKTTLAMVIASEMGSQIKTTSGPAIERPGDLAT------ILTSLEPGDVLFIDEIHRLSRAIELYPAMEDYCLDIVIGTGPTA--------RSVRLDLPPFTLIGATTRAGLLSAPLRDRFGVDHLEFYTEEQLTEIVLRTSNILDTKIDDLGAREIARRSRGTPRIANRLLKRVRDFAQVRGNGTVTEKLAKEALT--LLQVDPRGLDTIDQKLLHTIIQSFRGGPVGLDTIAASIGEERETIEDMQEP....................................................................................................................................................................................................................................................................... 302
13 -40.200IDP92030 ruvB-like 1, putative [Toxoplasma gondii ME49] TGME49_019590 [Toxoplasma gondii ME49]  ali follow..  16  216AIQKEKVKVGDVIYIEANTGAVKRVGRSDAHSTEFDLEVEEYVPVPKGEVHKRKEVVQVVTLHDLDVANAKPQGGTDIISVMGQFLKPRKTEITEKLRSEINKT--VNKYIDQGIAELLPGVLFMDEVHMLDIECFTFLNRILESPLSPIIIFATNIEPHGMPVDLLDRLLIVKTAPYTISEVVQVLKIRSQAENVRLSTEALELLGEVGHTSLRYALQLLEPARILGHEIVERKHIEDVDALLDCKSSAQRCAEMRDV............................................................................................................................................................................................................................................................................................................... 489
14 -38.600IDP92077 ruvB-like 1, putative [Toxoplasma gondii ME49] TGME49_097370 [Toxoplasma gondii ME49]  ali follow..  16  187...RQQIRVGDVIYIEASTGNVKRVGRSDDFAMEFDLDADEFVPIPRGDVHKKKEVIQDVTLHDLDAANARPQGGNDFASLLGQLAKPRKTEITEKLRMEINKV--VNRYIDQGIAELVPGVLFIDEVHMLDIECFTYLNRALESSLTPIVVFATNLSAHGIPVDLLDRMLIARTLPYNLEEIKHVIRIRAKIENLDMEEEAITLLGEIGRTSLRYAVHLLTPASILAEPAITRDHILRVDSLFSARRLAQEADFFVQ................................................................................................................................................................................................................................................................................................................ 463
15 -21.600IDP91277 conserved hypothetical protein [Bacillus anthracis str. Sterne] NT05BA4403 [Bacillus anthracis str. Sterne]  ali follow..  13  1........................MSDIHKKIKKKQFAPLYLLYGTEAFFINETIKLITTEA--------------------EEDREFNVVTYDLEE-----YLEDVVEDARTLPFFGERKVLLIKSPLFLTSQKIKILEEYIGEPSPFSILVFVAPERKKITKLLKKTADIVEANAMQVQDVQKWIVARAEEGHVHIDNAAVSLLLELVGSNVTMLAKEMDKLTLYMGGEITPKLVAELVPKSVEQNVFALTEKVVKKDIAGAMQILDGLFTQQEEPIKLLALLVSQFRLLHQVKELQQASHIGVHPYRVKLAMNQTKFFSFEELKKVIIELAEADYSMKTGKDKKLVLEFFLMRLNHM.......................................................................................................................................................................................................... 336
16 -18.100IDP90848 gene: holA; DNA polymerase III subunit delta [Vibrio cholerae O1 biovar eltor str. N16961] VC0953 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  10  3.......................IYAEKLAESLHKTLYPIYLVFGNEPLLLQEAKTAIEKTA-----------------------QAQGFLEKHRFSADAGLDWNAVYDCCQALSLFSSRQLIEIEIPEGVNAQTAKELSALVGQLHQDILLLVIGPKLTKA-KTLAQQACWVNCLTPELSRLPQFVQQRCFALGLKPDAEAVQMLAQWHEGNLFALAQSLEKLLLYPDGLLTLVRLEESLSRHNHFTPYHWMDALLEGKANRAQRILRQLMLEESEPIILIRTAQKELTQLLKWQQERQFDRYRVWQNRRPLYSAALQRLPSRALLRLVGILTQAELLAKYEQPVWPILQQLSLECCNPQANLPLP................................................................................................................................................................................................... 341
17 -18.000IDP04212 gene: holA; DNA polymerase III subunit delta [Salmonella typhimurium LT2] STM0646_1_343 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  11  7.........................EQLRAQL-NEGLRAAYLLLGNDPLLLQESQDAIRLAAA-------------------QGFEEHHAFTLDPST-----DWGSLFSLCQAMSLFASRQTLVLQLPENGPNAA-EQLATLSELLHDDLLLIVRGNKLTKA-TALADRSVQVSCQTPEQAQLPRWVAARAKAQNLQLDDAANQLLCYCYEGNLLALAQALERLLLWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHILQQLRLEGSEPVILLRTLQRELLLLVNLKRQSAFDKHRVWQNRRPMIGDALQRLHPAQLRQAVQLLTRTEITLKYGQSVWADLEGLSLLLCHKALADV..................................................................................................................................................................................................... 339
18 -17.600IDP90919 gene: holA; DNA polymerase III subunit delta [Yersinia pestis CO92] YPO2608 [Yersinia pestis CO92]  ali follow..  11  4..................IYPEQLVAQLHEGLRA-----CYLLCGNEPLLLQESQDHIRRVA-------------------SQHDFTEHFSFALDAH-----EWEHIFSLCQALSLFASRQTLLLSFPDGLTAPISEQLVKLSGLLHPDILLILRANKLTKA-KALSKNGVFVSCQTPEQAQLPRWVSARAKSLNLNVDDAAIQLLCYCYEGNLLALSQALERLLLYPDGKLTLPKVEQAVNDAAHFTPYHWLDALLMGKSKRAWHILQQLQQEDSEPVILLRTVQRELLLLLALKRQMEFDQHKIWQNRRPMMTQALQRLSLQQLQQAVHLLTQMEIRLKYGQSIWPELETLSMLMCGKTLPES..................................................................................................................................................................................................... 339
19 -14.900IDP04393 gene: lonB; ATP-dependent protease LonB [Clostridium perfringens ATCC 13124] CPF_1645 [Clostridium perfringens ATCC 13124]  ali follow..  24  57...EPLTEKSRPSNLEEIIGQEKGIKALKAALCGPN-PQHVIIYGPPGVGKTAAARIILEEAK---KMAASPFNK--DSKFVEIDATTLRFDERGIADPLIGSVHDIYQGAGSL-TKAHGGILFIDEIGELHPIELNKLLKVLEDPADFRLIGATTRSPEEIVPAIRSRCVEIFFRGLTVEEIRKIALNATNKVGYRISDEGLDIVSRYCTNG-REVINLVQLCSGLA.............................................................................................................................................................................................................................................................................................................................................. 316
20 -14.700IDP01132 gene: loN2; ATP-dependent protease LA BA_4703 [Bacillus anthracis str. Ames]  ali follow..  17  60.....LAEKVRPTSFLDIVGQEDGIKSLKAALCGPN-PQHVIIYGPPGVGKTAAARLVLEEAK-------------TNATFIELDATTARFDERGIADPLIGSVHDIYQGAGAM-TDAHGGILFIDEIGELHPIQMNKMLKVLEDPADFRLVGATTRSPEEIPPAIRSRCLEVFFRELDTEEIQKVAKNAADKVEMQIGENGIEMIGMYANGREAINLVQISAGMAINEEREDIEWVVHSSQIYPIPRIGLVNGLAVYGPNTGALLEIEVTAIKAKDKGSVTGIVEEESIGSQTKSIRRKSMAKGSVDNVLTVLRSLDVLPEGYDIHINF----------IDGPSAGIAMATGVYSAVHHTYVNNEVAMTGEIS............................................................................................................................................................................................ 475
21 -13.300IDP01666 gene: clpX; ATP-dependent protease ATP-binding subunit [Bacillus anthracis str. `Ames Ancestor`] GBAA4704 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  16  73...............EYVIGQDNAKKALAVAVYNHYKRSNIALIGPTGSGKTLLAQTLARILN-----------------------IADATSLTEAGYVGED-LLKLIQAADYDVEKAEKGIIYIDEIDKVARKSQQALLKILEGTVASVFIQIDTTNILFICGGAFDGIEPIIKRRLGEKVIGFGSEKKNADVNEKHVLSHVLPEDLLRFGLIPEFIGRLPVIANL--EPLDEDALVDILTKPKNALVKQFQKLLELDDVELEFGALIEIAKKAIERKTGARGLRSIIEGLML............................................................................................................................................................................................................................................................................ 375
22 -13.100IDP02143 gene: clpX; ATP-dependent Clp protease, ATP-binding subunit ClpX [Coxiella burnetii RSA 493] CBU_0739 [Coxiella burnetii RSA 493]  ali follow..  14  72...............EYVIGQEFAKKVLSVAVYNHYKRSNILLIGPTGSGKTLLAQTLAKILD-----------------------IADATTLTEAGYVGED-IQKLLQKCNYDVEKAKTGIIYIDEIDKIARKTQQALLKLIEG--SNILFICGGA---------FADLHKIIQRRTDKSGIGFAAEVRPKEDFSREASKLIKQTEPGKYGLIPEFVGRLPIITTL--EELDEDALMRILTEPKNALVKQYRKLFEFEGVEIDFDALKAIAKRAIQQKTGARGLRSIVEHTL............................................................................................................................................................................................................................................................................. 376
23 -13.000IDP00680 gene: clpX; ATP-dependent protease ATP-binding subunit SACOL1721 [Staphylococcus aureus subsp. aureus COL]  ali follow..  16  63..........TPKEIMDVIGQEKAKKSLAVAVYNHRIQQLIALIGPTGSGKTLLAQTLAKTLNVP---------------------IADATSLTEAGYVGDD-LLRLIQAADFDIDKAEKGIIYVDEIDKIARKSQQALLKILEG--TNILFILGGA--DGIEEVIKRRLGEFSSNEADKYDEQALLAQIRPEDLQAY-------------GLIPEFIGRVPIVANL--ETLDVTALKNILTQPKNALVKQYTKMLELDDVDLEFEALSAISEKAIERKTGARGLRSIIEESLI............................................................................................................................................................................................................................................................................ 375
24 -12.900IDP01335 gene: clpA; ATP-dependent Clp protease ATP-binding subunit VC1144 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  17  461...............MLVFGQDAAIDVLTEAIKLTRAG-SFLFAGPTGVGKTEVTLQLSKLL------------------------GIELLRFDMSE--GYDQGGLLTDAVIKHP----HSVVLLDEIEKAHPDIFNLLLQVMDN--RKADFLVMTTN---AGVAETVKKSIGLIQQDNSHDAMSEIKKVFTPE-----------------------RNRLDHIIWF--NSLDERVIHQVVDK----FIVELQAQLDARGVSLEVDARHWLAVKGYDREMGARPMGRVIQEQL............................................................................................................................................................................................................................................................................. 715
25 -12.900IDP02671 gene: clpE; ATP-dependent protease [Listeria monocytogenes EGD-e] lmo0997 [Listeria monocytogenes EGD-e]  ali follow..  17  428...............GKVIGQEDAVKKVAKAIRRSRVG-SFLFVGPTGVGKTELGRTLAREL----------------------GTSEAMIRLDMSE--GHEEAGQLTEKVRRNP----YSIILLDEIEKAHPDVQHMFLQILED---------RLTD---------SQGRTVSFKDIMTSNAGA--TDTEASVGFNTTTETKLEKGSDILAKLGEFLNRLDSVIEF--KSLEKDDLVQIIDL----MLVDLNEMLAQEGVTIDVEVKEHLIDLGYDPKFGARPLRRTIQEHL............................................................................................................................................................................................................................................................................. 689
26 -12.700IDP02389 gene: clpC; endopeptidase Clp ATP-binding chain C [Listeria monocytogenes EGD-e] lmo0232 [Listeria monocytogenes EGD-e]  ali follow..  18  507...............ERVIGQDAAVKAVSLAVRRARAG-SFIFLGPTGVGKTELARALAESM----------------------GDEDSMIRIDMSE--GYEEGGQLTEKVRQKP----YSVVLLDEIEKAHPDVFNMLLQVLDD--------LTDSKGRVV--TVIIMTSNIGAQEMKQDKSMGFNVTDPLKDHKAMEHRVLQDLKQAFR----EFINRIDETIVF--HSLQEKELKQIVTL----LTAQLTKRLAERDIHVKLGAKSKIAKDGYDPEYGARPLKRAIQKEV............................................................................................................................................................................................................................................................................. 772
27 -12.700IDP01877 negative regulator of genetic competence ClpC/MecB [Bacillus anthracis str. `Ames Ancestor`] GBAA0080 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  18  509...............DRVIGQDEAVVAVAKAVRRARAG-SFIFLGPTGVGKTELARALAESM----------------------GDEDAMIRIDMSE--GYEEGGQLTEKVRRKP----YSVVLLDEVEKAHPDVFNILLQVLED--------LTDSKGRTV--TIVIMTSNVGAEALKRNKHLGFNVQDESRDYSDMKGKVMDELKKAFR----EFLNRIDEIIVF--HMLEKKHIQEIVTL----MVNQLVNRLKEQEIELHLGAISAIADKGFDREYGARPLRRAIQKHVEDRLS........................................................................................................................................................................................................................................................................ 779
28 -12.600IDP95071 ATP-dependent protease ATP-binding subunit ClpX [Peptoclostridium difficile 630] YP_001089820 [Peptoclostridium difficile 630]  ali follow..  15  62..........KPKEMMEVIGQEKAKKALSVAVYNHYKR-NILLLGPTGSGKTLLAQTLARTLNVP---------------------MADATSLTEAGYVGED-LLKLIQAADFDIEKAERGIIYIDEIDKIARGVQQALLKILEG-PHQEFLKIDTTNVLFILGGAFDGLEKIIQKRGGDKTLGFGAKIESKKELDLGKLYEKVLPEDLLKYGIIEFIGRIPVLATL--ELLDEDALMQILQEPKNALVKQYKKLLELDDVELEFGALRAIAKKAIERNTGARGLRSIVESVM............................................................................................................................................................................................................................................................................. 375
29 -12.200IDP02793 gene: loN; ATP-dependent protease La 1 [Bacillus anthracis str. `Ames Ancestor`] GBAA4702 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  19  319...............KDHYGLEKVKERVLEYLAVQKLTNSLCLVGPPGVGKTSLARSIATSLN-------------RNFVRVSLGGVRDESEIRGHRRTYVGAIQGMKKAKSVNP------VFLLDEIDKMSND--AALLEVLDPEQSKVMFVATANTLSSIPGPLLDRMEIISIAHIAREHLLPKQLQ-LRKGNLQVRDEALLEIIRTREAGVRTLERQIAKVCRKVAKIVTEKNVVDLLGQAEKTDQVGMATGLAYTAAGGDTLAIEVSVAPGKGKLILTGKLGDVMKESAQAAFS........................................................................................................................................................................................................................................................................ 640
30 -12.100IDP02605 gene: hflB; ATP-dependent metalloprotease [Yersinia pestis CO92] YPO3502 [Yersinia pestis CO92]  ali follow..  18  150.............SFADVAGCDEAKEEVSELVDGGKIPKGVLMVGPPGTGKTLLAKAIA-------GEAKVP--------TISGSDFVEMFVGVGASR-----VRDMFEQAK-APC-----IIFIDEIDAVGRQTLNQMLVEMDEGNEGIIVIAATNRPDVLDPALL-RPGRFDRQVVGLPDVRGREQILVHMRRVPLDTDIASVIARGTPGSGADLANLVNEAALFAARVVSMVEFEKMMGAERRSMVMTEAQKESTAYHEAGHAIIGRLVPEHDPVHKV--TIIPRGRALGVTFFLPEGDAISASRQKSQISTLYGGRLAEEIIYGPEKVSTGASNDIKVATS......................................................................................................................................................................................................................... 498
31 -12.100IDP02184 gene: ftsH; ATP-dependent metalloprotease FtsH [Coxiella burnetii RSA 493] CBU_1352 [Coxiella burnetii RSA 493]  ali follow..  18  154.............TFDDVAGVDEAKEEVKELVEGGKMPCGVLLVGPPGTGKTLLAKAVA-------GEAKVP--------TISGSDFVEMFVGVGASR-----VRDMFDQAK-APC-----IIFIDEIDAVGRQTLNQLLVEMDEGKEGIIVMAATNRPDVLDPALL-RPGRFDRQVVPLPDIKGREYILVHMNKLPLAKDVASVIARGTPGSGADLANIVNEAALFAAKDVSMSEFERMMGAERRSMVMSDDEKKLTAYHEAGHAIVGLHMLEHDPVYKV--TIIPRGRALGVTMFLPEHDRYSMTKRRLQLAGLFGGRIAEEIIFGPDLVTTGASNDIEKATE......................................................................................................................................................................................................................... 502
32 -12.100IDP01644 gene: lon; DNA-binding, ATP-dependent protease La [Francisella tularensis subsp. tularensis SCHU S4] FTT0626 [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  19  324...............KDHYGIKKVKERILEHLAVQIKRDSLCLVGPPGVGKTSIGQSIARATG-------------REYVRMALGGVRDESEIRGHRRTYIGSIQKIIKSKTENP------LFLLDEIDKISSD--AALLEVLD-PEQNSTFFVATANSLDIDPALRDRLEIINLSAIAKQYLIPKALE-LTKDEINFTPKAILDIIRTREAGVRNLQQKIDGVCRKAVKNITQKNLEDYLGVKNAKAKVGQVTGLAWTSVGGELLTIEALAMPGKGKVKYTGSLGDVMKESIDAAFS........................................................................................................................................................................................................................................................................ 646
33 -12.100IDP00151 gene: mshM; MSHA biogenesis protein MshM VC0403 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  15  19...........TELFLGLAPHFEAIQTLSAAIEMGE----SKLTGEVGTGKTMVCRMLLTHLEVALIYLPNP--------MLSGEELRQAVELQLDVASPVRVVEQIQTRLIELHQQGKRVVALVDEAQALSDEALETLFGNLETEQTKLLQIVLIGQPEQFRQRITFNANLRPLTQAETEVYIESRLQKAQAPYPLFNATLKKAVWRASQGIPRLINQICHKALLLASPLVNQHHLFAAI................................................................................................................................................................................................................................................................................................................................. 259
34 -12.100IDP02738 gene: hflB; ATP-dependent metalloprotease [Francisella tularensis subsp. tularensis SCHU S4] FTT1310c [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  18  150.............TLDDVAGVDEAKEEVAEIVDGGKIPKGVLMVGPPGTGKTLLARAIA-------GEAKVP--------SISGSDFVEMFVGVGASR-----VRDMFEQAK-APC-----LVFIDEIDAVGRQTLNQMLVEMDADNEGVIVIAATNRPDVLDRALL-RPGRFDRQTVGLPTVKGREAILVHMKKVALGEDVADWIARGTPGSGAELANLVNEAALFAADKVSMADFEKLMGSERRSMAMTEKEKRLTAYHEAGHAIIGRLMPEHDPVYKV--SIIPRGRALGVTMYMPEGDTVSQSRLVLRLCSILGGRIAEELIFGYDHVTTGASNDIQVATD......................................................................................................................................................................................................................... 498
35 -12.000IDP00697 ATP-dependent Clp protease, putative SACOL2563 [Staphylococcus aureus subsp. aureus COL]  ali follow..  14  420...............SKIIGQDQAVEMVSRAIRRNRAG-SFLFVGPTGVGKTELAKQLAIDL-----------GNKDALIRLDMSEYSDVSKMIGTTAGYVDNSNTLTEKVRRNP----YSVILFDEIEKANPQILTLLLQVMDD---------NVINFKNTIIICTSNAGFGNGNDAEEKDIMHEMKKFFRPE-----------------------LNRFNGIVEF--LHLDKDALQDIVNL----LLDDVQVTLDKKGITMDVDAKDWLIEEGYDEELGARPLRRIVEQQV............................................................................................................................................................................................................................................................................. 670
36 -12.000IDP91438 ClpB protein [Vibrio vulnificus CMCP6] VV1_0482 [Vibrio vulnificus CMCP6]  ali follow..  18  568...............KRVIGQKEAVEVVANAIRRSRAG-SFLFLGPTGVGKTELCKTLANFM-----------------DAMVRIDMSEFMEKHSVAR-GYEEGGYLTEAVRRKP----YSVILLDEVEKAHPDVFNILLQVLDD---------RLTD---------GQGRTVDFRNIMTSNLGS--SRIQENFAMLDYQGIKEQVMEVVTKHFREFLNRVDETVVF--HPLGQDHIKSIAAI----QLNRLANRMEEHGYPLEVKALELIAQVGFDPVYGARPLKRAIQQSIENPLA........................................................................................................................................................................................................................................................................ 830
37 -12.000IDP06262 gene: clpX; ATP-dependent protease ATP-binding subunit ClpX [Streptococcus pneumoniae TIGR4] NP_346016 [Streptococcus pneumoniae TIGR4]  ali follow..  15  63..........KPIELLHVIGQDRAKRALAVAVYNHYKRSNILMIGPTGSGKTFLAQTLAKSLNVP---------------------IADATALTEAGYVGED-LLKLLQVADFNIERAERGIIYVDEIDKIAKKSENALLKIIEG--KNILFIVGGA--DGIEEIVKQRLGEFGQNNKAIDENSSYMQEIIAEDIQKF-------------GIIPELIGRLPVFAAL--EQLTVDDLVRILKEPRNALVKQYQTLLSYDDVELEFEALQEIANKAIERKTGARGLRSIIEETM............................................................................................................................................................................................................................................................................. 376
38 -11.900IDP02742 hypothetical protein GBAA2122 [Bacillus anthracis str. `Ames Ancestor`] GBAA2122 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  20  22.................MVGKRKETILALTALLAE--GHV-LLEDVPGVGKTMLVRALSKSIDADKRIQFTP----------------DLLPSD----TGVSIYNPKELQFEFKPGPIMGNFILADEINRTSPKTQSALLESMEEPLPKPFFVMATQNPVEYEGTY-AQLDRFLLKKMGYPTPEEELLYLQQSREVSMDKGIKHYIVKLVSQSPRGSIALMKASQAYGRNYVIPDDVKFLAPYVLAHRLILKMEAKFEGITGE--QVISKIVAR................................................................................................................................................................................................................................................................................................ 285
39 -11.900IDP02116 gene: clpB; clpB protein [Coxiella burnetii RSA 493] CBU_0094 [Coxiella burnetii RSA 493]  ali follow..  18  570...............KRVIGQDEAVNAVANAIRRSRAG-SFLFLGPTGVGKTELCKALAVFL----------------------DTEDAMVRIDMSEFMGYEEGGYLTEAIRRRP----YSVILLDEIEKAHNDVFNVLLQVLDD---------RLTD---------GQGRTVDFRNTVIVMTSNLGSDLIREFSGENYDKMKDAVMEVVAQHFREFINRIDEAVVF--HSLKKEQIRNIAII----QIDRIKKRLKEKDYQLTIDALDYLSELGYDPVYGARPLKRVLQQQLENPLS........................................................................................................................................................................................................................................................................ 831
40 -11.900IDP95260 DNA-binding ATP-dependent protease La [Acinetobacter baumannii ATCC 17978] YP_001084064 [Acinetobacter baumannii ATCC 17978]  ali follow..  16  42...............ADHYGLDDVKDRIVEYLAVQSRGPILCLVGPPGVGKTSLGESVAKATG-------------REFVRMALGGVRDEAEIRGHRRTYIGAVQSLTKVGVKNP------LFLLDEIDKMAQD--SALLEVLD-PSQNSKFFICTANSMNIPEALLDRMEVIRLPGYTEDEKVNIAER-LRPKELTIHEEAIRDIVQTREAGVRNVKEAVSKKSKNLQLDVTSANLPEYLGMAEDEAQVGRVNGLAWTSVGGELLTIEVAAVKGKGKFITTGSLGDVMKESITTAMT........................................................................................................................................................................................................................................................................ 364
41 -11.800IDP91389 Type II secretory pathway, component ExeA [Vibrio vulnificus CMCP6] VV1_1437 [Vibrio vulnificus CMCP6]  ali follow..  17  19...........TELFLGLAPHFEAIQTVMAALDMGE----VKVTGEVGTGKTMVCRMLIDQLKVNLVYLPNP--------VLSGHELQMAIEMGLKTYDSVSLVPLIQDCLIGMRQRGMRTVLLVDEAQALPLEAMEALFGNLETEQEKLLQIVLFGQPERIAQHELRQFRQCQLRPLTIEEIDSRLAKAGDGEHQYLTTEQKKALWRGAGGIPRLINQLCHKAFLLAQKNVTNQHLFTAI................................................................................................................................................................................................................................................................................................................................. 260
42 -11.700IDP91903 hypothetical protein SpneCM_05798 [Streptococcus pneumoniae str. Canada MDR_19A] SpneCM_010100005798 [Streptococcus pneumoniae str. Canada MDR_19A]  ali follow..  16  185.............RFSDVAGAEEEKQELVEVVEGARIPAGVLLEGPPGTGKTLLAKAVA-------GEAGVP--------SISGSDFVEMFVGVGASR-----VRSLFEDAK-APA-----IIFIDEIDAVGRQTLNQLLIEMDEGNEGIIVIAATNRSDVLDPALL-RPGRFDRKLVGRPDVKGREAILVHAKNKPLAEDVLKLVAQQTPGVGADLENVLNEAALVAASIIDASDIDEIAGPSKKDKTVSQKERELVAYHEAGHTIVGLVLSNARVVHKV--TIVPRGRAGGYMIALPKEDQMLLSKEDMKEQLAGLMGGRVAEEIIFNVQTTGASNDFEQATQ......................................................................................................................................................................................................................... 531
43 -11.700IDP04143 gene: clpB; Clp ATPase [Yersinia pestis CO92] YPO3275 [Yersinia pestis CO92]  ali follow..  18  568...............QRVIGQDEAVEAVSNAIRRSRAG-SFLFLGPTGVGKTELCKALATFL----------------------DSDDAMVRIDMSEFMGYEEGGYLTEAVRRRP----YSVILLDEVEKAHPDVFNILLQVLDD---------RLTD---------GQGRTVDFRNIMTSNLGS--DLIQEHFGQMNYSEMKTVVMDVVSHHFREFINRIDEVVVF--HPLGRAHLASIANI----QLERLYKRLEERGYEVKIPALEFLGEAGFDPVYGARPLKRAIQQEIENPLA........................................................................................................................................................................................................................................................................ 830
44 -11.600IDP02556 gene: clpB; ClpB protein [Francisella tularensis subsp. tularensis SCHU S4] FTT1769c [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  18  570...............KRVIGQDQAIKAVSNAVRRSRSG-SFMFLGPTGVGKTELTKALAEFL-----------------DAMLRVDMSEFMEKHSVAR-GYEQGGYLTEHVRRKP----YSVILLDEVEKAHADIFNILLQVLDD---------RLTD---------GQGRTVDFKNTVIVMTSNLGSHRIQEMQGQDYETVKSAVMEMVLSHFREFVNRVDDAIVF--EPLNKEMITEIAKI----QIKRLEKRLADLSIGLEVGAMDKLADAGFDPVFGARPLKRAIQNNLENPLA........................................................................................................................................................................................................................................................................ 831
45 -11.600IDP01772 gene: clpB2; Clp ATPase [Yersinia pestis CO92] YPO3599 [Yersinia pestis CO92]  ali follow..  19  574...............QQIKGQETAIHCLHQHLLTARAD-AFLLVGPSGVGKTETVLQIADLL-----------GGRQYLTTINMSEFQEVSRLIGSP--GYGEGGVLTEAIRQKP----YSVVLLDEVEKAHPDVLNLFYQAFDK--KNIVFFLTSN--AFFKPALLARMEVVPYLPLGMETLQIKLNRLDTL-DVVIEPEVIDEILLRAENGARMLESIIDGAL................................................................................................................................................................................................................................................................................................................................................. 829
46 -11.400IDP02333 gene: clpX; ATP-dependent protease ATP-binding subunit [Francisella tularensis subsp. tularensis SCHU S4] FTT0625 [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  14  58..........KPVEIKKIIGQDNAKKVLSVAVYNHYKRSNVLLIGPTGSGKTLFAQTLAKLLN----------------VPFAIADATTLTEAGYVGDDVENIIVRLLQNADFDVAKAQKGIIYIDEIDKIARKS-QALLKLIEGTVSSVPPKGGRKHPNQDMIQVDTSDILFGIEKVIKHRMDKVSIGFNSDVIQQKNSLDSDKLMQKIEGLIPELIGRLPIVTVL--NELKEEDLVRILTEPKNALIKQYIKLFKFDNVNIEFQALVEIAKKAITKKTGARGLRTILENVL............................................................................................................................................................................................................................................................................. 372
47 -11.400IDP92574 cell division cycle 48 protein [Toxoplasma gondii] ACU32853 [Toxoplasma gondii]  ali follow..  15  203.............GYDDIGGCRKQMAQIREMIE--KPPRGVLLYGPPGSGKTLIAKAVANETG------------------------AFFFLINGPEGEAESNLRRAFEEAE-APA-----IIFIDEIDSIAPKVVSQLLTLMDKGRGQVVVIGATNRQNSIDPALR-RFGRFDDIGVPDDNGRLEILRIHTRNMKLANDVKLEELAANTHGVGADLAQLCTEAAVLNSMAVTQEHFTSALQCCNPSSLRETVVEVPNGGLEDVKRNLQEMILYPIDHPEKYEKFGMSPSRGVLFYGPPGCGKTLLAKAVASECSANFVSIKGPELLT--MWFGESEANVREVFDKARAASPCVLFFDELDSIGTQRG.................................................................................................................................................................................................. 588
48 -11.400IDP92125 heat shock protein, putative [Toxoplasma gondii ME49] TGME49_057990 [Toxoplasma gondii ME49]  ali follow..  21  167.....FTDLAEKGKLDPVIGREDEIRRVIRILCRRTKNNPVLI-GEPGVGKSAVVEGLARRI------------------DVPSNLRCRLVSLDGAKFRG-ERLTAVLQEVKDAAGK----ILFIDEIHVIALDAANLLKPMLAR--GELRCIGATTEYRK--AAFERRFQQVHVREPSVQATISILRGLKDRHGVRILDSALVEAAQLADRYITSAIDLMDEACA................................................................................................................................................................................................................................................................................................................................................ 397
49 -11.400IDP01651 gene: clpB5; Clp ATPase [Yersinia pestis CO92] YPO2946 [Yersinia pestis CO92]  ali follow..  17  590...............ARVIGQPHALMQLGENIMTARAG-VFMLVGPSGVGKTETALAIAESM-----------GGEQNMITINMSEYQEVSSLKGSP--GYGEGGVLTEAVRRKP----YSVVLLDEIEKAHSDVHELFFQVFDK--KNTILLLTSN--KVFPAAFLGRVTVIPYLPLQQDALQHHLDRIGAR-TLKYSDEVVEDVVSRCETGARMLIRYIEQNI................................................................................................................................................................................................................................................................................................................................................. 851
50 -11.300IDP00175 putative ATPase subunit of ATP-dependent protease YPO1471 [Yersinia pestis CO92]  ali follow..  21  582...............ERVIGQDAALGALAQRLRAAKTG-VFLLVGPSGIGKTETALALADSL-----------GGEKSLITINLSEYQEVSQLKGSP--GYGQGGVLTEAVRKRP----YSVVLLDEVEKAHRDVLNLFYQVFDR--RNTVIVMTAN--DHFQPALLARFQTLIYRPLQVDALKRKLNQVAQR-SCQIEDSLTDTLVAACDTGARNIDSLLNQQI................................................................................................................................................................................................................................................................................................................................................. 842
51 -11.300IDP01480 clpB protein VCA0116 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  19  186.....VTEQARNGELDPVLSRENELNLMVDILCRRRKNNPIVV-GEAGVGKSAMIEGLALRVVAGKVPTQ---------------QNVELYSLDGASVKG-KRLKGVIDAIKQSPKP----ILFIDEAHTLGSDAANLLKPALAR--GELSTVAATTEYKK--PALTRRFQLVKLDEPTIDQAVDILRGLNSVHNVLITDDALKAAAELSARYISGAIDVLDTACA................................................................................................................................................................................................................................................................................................................................................ 417
52 -11.300IDP04443 gene: clpB; putative Clp ATPase [Yersinia pestis CO92] YPO0506 [Yersinia pestis CO92]  ali follow..  15  572...............DHIFGQRNAIKEISQAIRIARAG-IFLLAGSTGTGKTETANVLVETL-----------GGAHNLITFNMSEFQELSTLKGAP--GYGKGGKLTEAVRRKP----YSVILLDEFDKAHADIQDAFYQVFDK--RQCFILLTCN--RRFAPALLARVNIIPYIPLDQDALAQHLARLQTR-TLVTEGDIPGWIASRVPNHGRAVEELLRQTL................................................................................................................................................................................................................................................................................................................................................. 832
53 -11.200IDP02091 gene: malT; transcriptional regulator MalT [Salmonella typhimurium LT2] STM3515 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  12  1...MLIPSKLSPVRLDHTVVRERLLAKLSGANNFRLA----LVTSPAGYGKTTLVSQWAA-----------------------GKNELGWYSLDEGDNQ-FIELAQWHRPL----------YLVIDDYHLITNPVIHDAMRFLRHQPENFTLVVLSRNLPQLG---IANLRRDQLLEIGSQQLQEAKQFFDRRLSSPIEAAESSRMCDDVAGALQ-ALSAARRLAGINASHLSDYLVDEVLDNVDVSTRHFLLKSAILRSMNDAL----VRVTGEENGQMRLEEIER--QGLFLQRMDDTGEWFSYHPLFGSFLRQRCQWELAAELPEIHRAAAE................................................................................................................................................................................................................................... 349
54 -11.200IDP92126 clp ATP-binding chain B1, putative [Toxoplasma gondii ME49] TGME49_068650 [Toxoplasma gondii ME49]  ali follow..  23  185.....LTEAAMANELDPVIGRDKEVRRVIQILSRRTKNNPIIL-GDPGVGKTAIAEGLAQRIVSGDVPDT---------------AGRQLISLDGAKLRG-ERLKSVIREVQESSGQ----ILFIDEIHMVGMDAGNILKPMLAR--GELRCIGATTEYRK--KALERRFQVVLVDEPRVEDALSILRGLKERHGVSIRDSALVAACVLSNRYIQDAIDLIDEAAS................................................................................................................................................................................................................................................................................................................................................ 417
55 -11.200IDP06378 gene: ORF44; ORF44 [Human herpesvirus 8] YP_001129396 [Human herpesvirus 8]  ali follow..  14  20.............NMTSDAKVRSVVEQIDR-LSNITTSSAYVITGTAGAGKSTSVSALHQNLNCLTGATVVAAQNLSRALKSYKSRHINICKVPKVTQSSIEQLQR-YELARYGANLWTSNIIVIDEAHILTAVVFNSWLDT----PLYIVCVGSPTQTDAFQSVVLTRCTDPQFGHL--------LKTL--EYNLDISPELMDYIDRVPKSKILDPLEYAGWTRLFISHQEVKSFLATLHTCL.............................................................................................................................................................................................................................................................................................................................. 364
56 -11.100IDP90100 ZZZ_0016 [Escherichia coli 042]  ali follow..  13  548...............QRVLGQRYAMSAIASQVLICRAD-VFLLAGPSGTGKTETARALAEFV----------------------GDENKLITINMTE--GFGQGGTLTERVSHNP----YSVILLDEIEKAHPDVLEFFFQIFDS--RDCLIIMTSN--EHFGAAFMGRTNLIPFTPLHSKTLRDIVLIKIDKICQRFEQASGQMYKIEYNDSLIDWITHHCQCDKSGARDIDS--------VLNSTVLPVLARYLTDSEDNRTPKKIRISVRKN............................................................................................................................................................................................................................................................................................... 836
57 -11.100IDP00663 gene: clpB; ATP-dependent Clp protease, ATP-binding subunit ClpB SACOL0979 [Staphylococcus aureus subsp. aureus COL]  ali follow..  25  167.....LVEEVRQGKMDPVIGRDEEIRNTIRILSRKTKNNPVLI-GEPGVGKTAIVEGLAQRIVKKDVPES---------------LDKTVFELDGAKYRG-ERLKAVLKEVKESDGR----ILFIDEIHMLAMDAGNMLKPMLAR--GELHCIGATTEYRE--SALERRFQKVAVSEPDVEDTISILRGLKERHGVRIQDRALVAAAELSDRYITDAIDLVDQACA................................................................................................................................................................................................................................................................................................................................................ 398
58 -11.000IDP90346 gene: lon; ATP-dependent protease La [Chlamydia trachomatis D/UW-3/CX] CT344 [Chlamydia trachomatis D/UW-3/CX]  ali follow..  18  358...............KDHYGLEDIKQRILELISVGKLGSIICLVGPPGVGKTSIGRSIAKVLH-------------RKFFRFSVGGMRDEAEIKGHRRTYIGAVQALKQSQIMNP------VIMIDEVDKIGSS--SALLEVLD-PEQNVLFILTANVLDSIPDPLLDRMEVLRLSQIATKYLVPRARK-LSAQNVTFQPEALKHMINAREAGVRTLNENIKKVLRKVALKITPKNLQDYLGRFYEKTPVGVATGLAWTSLGGATLYIESVQSSGKADMHLTGQAGDVMKESSQIAWT........................................................................................................................................................................................................................................................................ 688
59 -10.300IDP90747 gene: dnaA; chromosomal replication initiation protein [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0001 [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  14  101.....LNPSFTFESF--VVGDSNACKAIAHKDKLGKLYNPIFVYGPTGLGKTHLLQAVGNAS-------------------LEMGKKVIYATSENFINDFTSNLKN-GSLDKFHEKYRNCDVLLIDDVQFLGKFIFNEIIMTSDNPPNML---------KGITERLKSRFA--DITPPQLDTKIAIIRKKCEFNDINLSNDIINYIATSLGDNIREIEGIIISLNAYAGQEITLELAKSVMK-----------DHIKEKKENITIDDILSLVCKEFNIK--PSDVKSNKKTQNIV-TARRIVIYLARALTALTMPQLANYFEMKDHTAISHNVKKITEMIENDASLKAKIEELKNKI............................................................................................................................................................................................................. 434
60 -10.000IDP00004 Chromosomal replication initiator protein dnaA BA_0001 [Bacillus anthracis str. Ames]  ali follow..  17  111.....LNPKYTFDTF--VIGSGN-AASLAVAEAPAKAYNPLFIYGGVGLGKTHLMHAIGHYV-----------------IEHNPNAKVVYLSSEKFTNEFINSIRD-NKAVDFRNKYRNVDVLLIDDIQFLAGHTFNALHESSDRPPKEI---------PTLEDRLRSRFE--DITPPDLETRIAILRKKAKAEGLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSS--------------INADLAAEALKDIIPNSKPKIISIYDIQKAVGDVYQVKLEDFKAKKRTKSVA-FPRQIAMYLSRELTDSSLPKIGEEFGGRDHTTVIHAHEKISKLLKTDTQLQKQVEEINDIL............................................................................................................................................................................................................. 445
61 -9.840IDP02494 hypothetical protein GBAA0550 [Bacillus anthracis str. `Ames Ancestor`] GBAA0550 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  14  67...............NQLFGLEDALERLVEEYFHPSAKRLLLLMGPVSGGKSTLVTMLKRGLE---PMHEDP-NLSPLNVMRLEQEYVERIFFSEDRRTGIQDIADLTGSLDFSTNKANRGMMEFQEMLKCDEKFLWHLLSLTQEGNFKAELIVAHTNETKKNEALHSRIIVMPVPYNEEEHIYEKMIRESDVSDVHIAPHTLRVAAMFTKDPKRPDIDLIKKMRLYDGETVEGYNAIDVEELQREYQ----DEGMKGIDPRYVINRISSTIIRKEVPSINALDVLRSLKDGLDQHPSISNEDRERYMNFISLARKEYDEIAKKEVQKAF........................................................................................................................................................................................................................................ 480
62 -9.840IDP92128 clpB protein, putative [Toxoplasma gondii ME49] TGME49_082200 [Toxoplasma gondii ME49]  ali follow..  20  244.....MTKLAAEGKLEPVVGRNKEIKEVLTVLSRKGKGNPCLV-GEPGVGKTAVVEGLAQRLVEGMVPKS---------------ENKILFAVDGATYRG-KRMKALIRYAVNQEGR----ILFIDELHMLTMDAANLLKPPMAR--GEIRLVGATTEYKII-AAMERRLKPIFIEEPSTDRAIYILRKLSDKHEMKISDEAIVAAVMLSHKYIRNAIDLLDEAAA................................................................................................................................................................................................................................................................................................................................................ 474
63 -9.680IDP95070 gene: A19R; A19R [Monkeypox virus Zaire-96-I-16] AAL40587 [Monkeypox virus Zaire-96-I-16]  ali follow..  9  86....................QRKVVSEVVSNMRKMIELKRPTLHLACGFGKTITTCYLMTTHGRKT----------TQVEAVGLEHKISIDGVSSLLKE-IVVSRHLTNDAFCKYINKHYDLFILDESHTYNLMNNTAVTRFLAYYPPMMCYFLTATPRPANRIYCNSVINIAKLSDLKKTIYTSNKYHIYTEKLLSVDEPRNQLILDTLVEEFKSGTI--NRILVITKLREHMVFFYKRLGDAQNRRTPDMVKSIKELNR-FIFVSTLFYSGTGLDIPS--------LDSLFICSAVINNMQI------EQLLGRVCRETELLDRT-VYVFPNTSIKEIKYMIGNFV...................................................................................................................................................................................................................... 444
64 -9.650IDP92010 TFIIH basal transcription factor complex helicase XPB subunit, putative [Toxoplasma gondii ME49] TGME49_069660 [Toxoplasma gondii ME49]  ali follow..  11  466LKSSTKIRYY----------QERALRKMFSNGRARS-----IIVLPCGAGKTLTGKQFEEYTTIDSSRLLTLTAETKQTLWPVDEAGVLVSTYTMLAFSGRRSLAAERIMQQIRER--EWGLLIFDEVQFAPAPAFRRINDLVK--SHCRLGLTATLVREDLQWLIGPKLFEANWIELQDQGFLARVSCQEVWCPMTADHAKQRKLWVCNPTKLMTCEWLLDKILVFSDNVFALLHTAKALGQVSAVERVAILNKFKHESTFNSL-FLSKVGDNAIDIPCA----------IQISFNFASRRQEAQRLGRILRAKPQAGDEGENFNAFFYSLISKDTLEMVYADKRQQFII................................................................................................................................................................................................................... 842
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.