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Query: gi|30260215|ref|NP_842592.1| recombination protein RecR (BA_0021) [Bacillus anthracis str. Ames], from B.anthracis

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MHYPEPISKLIDSFMKLPGIGPKTAVRLAFFVLDMKEDDVLGFAKALVNAKRDLAYCSVCGHITDRDPCYICNDSHRDQSVVCVVQEPKDVIAMEKMKEYQGVYHVLRGAISPMGGIGPEDINIPQLLKRLHDETVQEVILATNPNIEGEATAMYISRLLKPTGIKVTRIAHGLPVGGDLEYADEVTLSKALEGRREVLast
1 -8.330IDP04275 DNA topoisomerase I [Bacillus anthracis str. Sterne] BAS3684 [Bacillus anthracis str. Sterne]  ali follow..  18  2..............................................................................SDYLVIVESPSKAKTIEK---YLGKKYKVVASMGHVRDLPKSQMGIEPVLKDLKSKKAKKVYLAADPDREGEAIAWHLANTLNVDVESDCRVV--------FNEITKDAIKESFKHPRAI 128
2 -8.240IDP05323 gene: topA; DNA topoisomerase I [Listeria monocytogenes EGD-e] lmo1275 [Listeria monocytogenes EGD-e]  ali follow..  17  2..............................................................................ADYLVIVESPAKAKTIEK---YLGKKFKVKASMGHVRDLPKSQMGVDPVLKELKQKKAKKVYLAADPDREGEAIAWHLANSLELDQSDKLRVV--------FNEITKEAVKESFKTPRKI 128
3 -8.210IDP90582 gene: topA; DNA topoisomerase I [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj1686c [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  19  2..............................................................................KKNLIIVESPAKAKTIGN---FLGKDYEVIASKGHIRDLPKSSFGIKALVKELKSKDAKEVYLATDEDREGEAIAYHIAKAIGKDENTLPRIV--------FHEITKSAIENALKNPRKL 129
4 -7.390IDP06295 primase-like protein [Streptococcus pneumoniae TIGR4] NP_346417 [Streptococcus pneumoniae TIGR4]  ali follow..  17  2...........................................................................KEKISQVIVVEGRDDTVNLKRYFDVE---------TYETRGSAINAQDIERIQRLHQR---HGVIVFTDPDFNGERIRRMIMMVIPTVRDEAVPKSKTKGRSLGIEHASYEDLKTALAQVTEQ 118
5 -7.330IDP90607 DNA polymerase III subunit delta` [Vibrio cholerae O1 biovar eltor str. N16961] VC2015 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  11  33.............IQASEGVGVESVELMARTLMCTSSQS------------EPCGFCHSCGLMQSGNHPDFHVVKPEKIGKSITVEQIRQMNRIAQESSQLSGYRLI--VIEPADAMNESSAN--ALLKTLEEPAPNCLFILVTSRIKHALVVEWLKGQGITTPAYALHLCADSPLKT-RAFMLEGGAEK........ 212
6 -6.930IDP90924 gene: holB; DNA polymerase III subunit delta` [Yersinia pestis CO92] YPO1606 [Yersinia pestis CO92]  ali follow..  12  29.............LHSLPGNGEDAIYALSRWLMCQQRQGEKSCGE-----------CHSCRLMLAGNHPDWYVLTPEKGKSSIGVELVRQLIDKLYSHAQQGGAKVV--WLPHAEVLTDAAAN--ALLKTLEEPPEKTYFLLDCHQPA-AICLQWLNLQWRKRQIPALKLSEGAPLAA-ERLLQPERWS......... 216
7 -6.870IDP02547 flagellin modification protein, PseA [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj1316c [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  12  1.....................................................MKFCKKC-HFDEEGVCDACRSQEAKNQNINWQEREKEFFELIKKYKKHPVYDCVIGVSGGKDST---------QVVKMLELGLNPLCVCFEPSVPTKIGRKNL-DNLNHLGVDLIHIKRDPKVYQKL.................. 126
8 -6.720IDP90644 gene: holB; DNA polymerase III subunit delta` [Salmonella typhimurium LT2] STM1201 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  15  29.............IQALPGMGDEACYALSRYLLCQQPEGHKSCGH-----------CRGCQLMQAGTHPDYYTLTPDKGKSSLGVDAVREVSEKLYEHSRLGGAKVV--WIADAALLTDAAAN--ALLKTLEEPPEQTWFFLASPEPA--ATLRSRCRLHHLAPPSESYAMSWLSREVTASQEALLTALRLNAGS... 197
9 -5.780IDP05336 gene: ruvA; hypothetical protein Cj0794 [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0799c [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  35  107..........ESVLKKVPGIGPKSAKRIIVELLENVSDDKSEALAALLTL.................................................................................................................................................... 152
10 -5.680IDP05236 gene: ruvA; hypothetical protein lmo1533 [Listeria monocytogenes EGD-e] lmo1533 [Listeria monocytogenes EGD-e]  ali follow..  27  106..........DVYLTKFPSVGKKTARQIILDL...................................................................................................................................................................... 127
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Grynberg M, Godzik A. NERD: a DNA processing-related domain present in the anthrax virulence plasmid, pXO1. Trends Biochem Sci. 2004 Mar;29(3):106-10.