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Query: gi|30260201|ref|NP_842578.1| DNA gyrase subunit A (BA_0006) [Bacillus anthracis str. Ames], from B.anthracis

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITADKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMATNIPPHQLGEVIDGVLALSHNPDITIAELMECIPGPDFPTAGLILGRSGIRRAYETGRGSIILRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNGMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTAEIAKQGLMERFGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMESIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGIPIINLLGVDKGEWINAIIPIREFGDDEFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITLGEEDQVVGMEIVEEDVNVLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNGKLVAVKSVTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKAQKDDEEETSEEVSSEELast
1 -2.110HGC00690 gi|162868815|dbj|BABB01001192.1|3.0 TMP00870;  ali follow..  16  3............EYILREIFLSVIAFLAGAGVSAGVFAFVLVIGVVPR-----ILRCSRIENIILIENVMICGVVAGNI-----SSVLDTAYNLGFANMPKVPVSNICGNYGLCVGIFVGCIAVALAEILHTFPIIYKRMK-------------------LRAGLGIIVISMAIGKALG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 145
2 -2.070HGC00164 gi|163636082|dbj|BABG01000191.1|4.0 TMP00833;  ali follow..  10  1MNDLIWGESVGSLYWEKESNAALFDYERKFIRSGL------DISPIIMPISQYRNTPYRFLENRTDCFKGLPG-LFADSLP--DTFGNQIINEWFASKGLSGEEITPLDRLCYVGKRGMGALEFEPSSPINGMNE-IEELTELAKSVFTDRMAFQVQLRQEGRNILDILKVGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 173
3 -1.880PB053359 gi|153891307|ref|ZP_02012332.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]gi|151582630|gb|EDN46158.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]  ali follow..  12  1.......................................................................................................LIAPDGSVG-------RSIAYRCGAFQLLAQMALRRELPEG-------------------------------VAPAQVRGALTAVIRRTLGAPGTFDNDTGNDGAGWLRI---------GLAGHQPGLGEVY-ISTGSLYLCTTAFLPLGLPASDDFSQPDAPWTSARV....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 125
4 -1.870PB032818 Q5LA03_BACFN/1-211 PB032818; Pfam-B_32818;  ali follow..  16  26............VSLTRVYFQSVIAVNLGITNIRFLPDVANFKRLF--KVATQGGKLGLAEKSASRKMLMQDYGISESFFKEIDTSIVQAYLFMYQGFSSDLMMLMGN------------LMQW-KFRMPAIFKKALRSMTEKTVHDVCT-KTVWKADDVHKTAAAVRQYKERLGFSEQWMSEY-------VYNIVLLAKKEPKHKDEE...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 208
5 -1.720PB047024 _Gut.Meta.Jp.0098985_ gi|162869273|dbj|BABB01000734.1||6 (+ 5047:5650~0 complete)  ali follow..  13  8....................ITITHHKILVLYKQGL--LHDMSK-PTEFLVGCRYYKGYMSPNNAERADRGYSSAWNKHHLDDKTHTKMEGMKMPIRYVCEM-FIDRVSNYQKEKYTDKSALEYTKAMLEYLLVMLSVKGEEYTYSYIKKEVLKGHIP......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 185
6 -1.570PB000119 Q6KIT1_MYCMO/1-381 PB000119; Pfam-B_119;  ali follow..  18  185..............TFKEIKFKKINFFSSIFLS-----------------IFAL-TITFAYNSTFLNLAQIV---INTIRPNPNPNPNEIF-----NFDLNNLPIEN----GLLTVE---AIWFLQSKME---------TDTATV----------------------IIINNTA---VNINKNSVKHN-----NFAVNYLKSEENN------YLTGRDFPLLGLF------------------------VEKFFKDDVEVFSPKIPFVVNNST--KNIFSSV------GISSLSTNNPKLIFTFTFD.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 377
7 -1.490PB012386 gi|82541244|ref|XP_724876.1| blood-stage membrane protein Ag-1 [Plasmodium yoelii yoelii str. 17XNL]gi|23479680|gb|EAA16441.1| blood-stage membrane protein Ag-1 [Plasmodium yoelii yoelii]  ali follow..  10  5........................................................................................................................................................................IFNDSTNIPIGTVFSFVSKAVQDISEDLIKIELNQNVSINKIFNILKA------SQASENTQNLRKKHAPIKVLINRKNFNLYQXXXXXXXXXXXXXXXXXXXXXXXXXXXXNFDTNESDKIKGDKNYYNS-----------ENFEGYSYKKIYKCDFCDDIYDNLREATKHENSHFQHDEEILFH--NTNKESLYELTENELKNIKKK.............................................................................................................................................................................................................................................................................................................................................................................................................................................................. 206
8 -1.430PB064361 Q64PJ4_BACFR/1-580 PB064361; Pfam-B_64361;  ali follow..  11  1..................MKIERLFIYCLLAGTSLL-TLSEGMYPL--TFTAMQGEVVATPQTRVSDYDDTDGKHKSKWDG-GEV------VKIGTDGAVGSYTLDSDGKPTTSTSNIPA---YWQ--------------STASQTVYGWYPNTADISLTGQDNTGNLKGVSSKQYSYKENVQLN-HQLVKF----RVKLNGDVPNLSDAKVFFYG---------------YPTCKNEYGTVIPQGDKTYLATRKVGDYYTAMLAPDTKTSNNFVK................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 234
9 -1.410PB031792 gi|154174791|ref|YP_001409041.1| flavodoxin family protein [Campylobacter curvus 525.92]gi|112804021|gb|EAU01365.1| flavodoxin family protein [Campylobacter curvus 525.92]  ali follow..  16  3.............................IDKGGPEAHFKRYIKEVKGKKTGLFITLGADPAGEHKVGRELLNEILAEFICQGDPKVIEEMKEMTPERQATWKQASTHPD----ENDLKNARKAFEG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 120
10 -1.370PB003645 Q65HI2_BACLD/1-230 PB003645; Pfam-B_3645;  ali follow..  16  104.................................................................NQLKDILETIIG-----EDVSI---VVNVDATSLKIFEKNRKTQETSTNETDKQGGKRTVSEMSSDEEIVIIKN-------------GDKETPVVVQTKKPD--IRGVLVVAQGVDNVQIKKTIIEAVTRVLDV................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 215
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 1 0 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;