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Query: gi|30260203|ref|NP_842580.1|(removed signalp:1-28) D-alanyl-D-alanine carboxypeptidase (BA_0009) [Bacillus anthracis str. Ames], from B.anthracis

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst ETGSALNIEAGAAILVEANSGKILYQKNADELLSIASMTKMMSEYLVHEAVDKGKFKWDQKIKVSEYAYKVSQDASLSNVALENGGSYTVKELYEAMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKELGLKNYKFVNSTGLTNKDLKGMHPEGTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIPKKEFRPEKEKFAMSNWNWMLKGLVKEYDGVDGLKTGSTPEAGDCFTGTVERNGMRFISVVIKTSSHTARFDETKKLYDYGFANFEMKQMYKKGSSVKGQETVRVENAKDKDVAVQTKQAISLPVPKGSKEVYKTELKESSKGQEAPIKKGAALGQMVITPKDTNDPGFLTGKSLQVDLVTTSEVEEANWFTRAMRGIGSFFSGIWNSAVDTVKGWFLast
1 -4.250PB048276 _Gut.Meta.Jp.0112258_ gi|163310311|dbj|BABD01000385.1||2 (- 258:885~0 complete)  ali follow..  10  8.........SETVMVIDVA--RKYFEPLLGRSLQTVDLALFTMYLAMDAGLKGSDNDVQVLLVYDKQSGK-----------LEHCLPSDLKNELDGVAFKASLGEFSFMAEGFVSRGDLYLDLLQIVLNAAEVKKLIVVPFNEEYGKEVENVLRECALENAGHKEEAKDIVYFRME....................................................................................................................................................................................................................................... 173
2 -3.890PB001823 Q5L7Q9_BACFN/1-326 PB001823; Pfam-B_1823;  ali follow..  8  117................DYDYNDLIIHVKNTASNHAYQHPTETWQTIEIQPIALGILSDGSTHMISDDVRTDLFGGRQGFINTVNDNDPIRYKLAS---TNIKNYAMPKKEKTSAAWVAWFIEVDGKRMYAASSDIDDMVNKENMP-----GLAVSNGNGTFSYPQEKNSLF-------ETYPGFSDWINGKVSSIGS-KELVYKYCSGGIIGEDGKSHKIWD......................................................................................................................................................................................... 322
3 -2.500PB040621 Q8A865_BACTN/1-132 PB040621; Pfam-B_40621;  ali follow..  9  22...................................LKKGHSKTVYAF-------AASFTDTVVYFTDIQILDSAKVSKEGFLTHRDLYSLKNYVEDNGLQQNSTCMIYFSENRKKLEKEATKILSKYKRN..................................................................................................................................................................................................................................................................................... 113
4 -2.390PB001404 Q2S5L8_SALRD/1-256 PB001404; Pfam-B_1404;  ali follow..  16  169....................................AATRIMRVLTFQRLTDVGDVPYFDAGKGALEGEFTPHYTRQDSIYMDL-----HDELRAAVDQFDASQPTFGGADLFNGSIEQWKRFANS......................................................................................................................................................................................................................................................................................... 255
5 -2.040PB009671 Q5LCM2_BACFN/1-111 PB009671; Pfam-B_9671;  ali follow..  12  1.....................................MKKVLVALTMV-------MGMGSAVAFAQEPVKLPAMEQNQQTSQDKFTKITVKELVKSTLSKDYEGTIVKEAFVAEKENGKVIIVTAIKEDQSTEEITVLLNEKG........................................................................................................................................................................................................................................................................ 104
6 -1.960PB000790 _Gut.Meta.Jp.0111831_ gi|163310496|dbj|BABD01000203.1||3 (- 2591:4589~0 complete)  ali follow..  16  229.....................................FAPWESYFLLAEAAEYGKEAYELGIRSSFEYFGVSEYADGTSVAFDDTVEPTSEVMTYRDGYTNTDQIQEVVYNYPTASKTLYGKAMNDHLTKIVLEIWNDHRRLGLPFFEIPANESDLIGSDMVNVLKKDSWKNGQQW--DFYPQ--------RMRYPTTLDNADPENYQKAVELL----GGSDVIIT..................................................................................................................................................................................... 433
7 -1.830PB022697 Q5LAY4_BACFN/1-165 PB022697; Pfam-B_22697;  ali follow..  12  39ETMPLLTGEQHSLLAYQIFRDEVLIQNGYGGYIFDNPFAKVMRLWGAEDFSK-----VYKAKKIYDAHRHDLEKERTEDEFMAMYEQYEAFDDLEEEYLDIEEEVTALVASYVDDHLELFAKIV........................................................................................................................................................................................................................................................................................... 165
8 -1.590PB071107 _Gut.Meta.Jp.0066071_ gi|162701604|dbj|BAAY01026246.1||2 (+ 344:749~0 complete)  ali follow..  11  1.....................................MKRFASHFLFLGYLKQYAVETEEGSVVR---------------IFPLTEEIENVEWLPGAIVLLTQDELKEL--DTNSPLVNAPQNYSKTSAEFYYNSTRILVKFPQNLLMALPPSIEGRCQLLPVYFSNFDITTML......................................................................................................................................................................................................................................... 123
9 -1.560PB177066 Q891G9_CLOTE/1-159 PB177066; Pfam-B_177066;  ali follow..  9  2.....................TVLSLKEVKLLMNDTQKNDLFYVCCLIEFIGRKTKNRRSIIVQKLGKKELIRQLDIAEANHCLSFEQVSDEIIEYFNIQEGDFHTVESCKYNVPSVQAIGKVYHRLIISIISEQDNLVDV.......................................................................................................................................................................................................................................................................... 121
10 -1.510PB044822 Q89ZL7_BACTN/1-147 PB044822; Pfam-B_44822;  ali follow..  9  36.............LQPDQTSGQLTIYNDDD---------EELANVMIEEWATYDGDDFMENVNLKSTLCRMKDAGDFDKFVLVDEDKETVAELLL------DDDTLLVDDELLKGLDKELDEFLKNLLE...................................................................................................................................................................................................................................................................................... 147
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 2 8 5   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. Discovering new genes with advanced homology detection. Trends Biotechnol. 2002 Aug;20(8):315-6.