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Query: gi|30260197|ref|NP_842574.1| DNA polymerase III subunit beta (BA_0002) [Bacillus anthracis str. Ames], from B.anthracis

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MRFSIQKDYLVRSVQDVMKAVSFRTTIPILTGIKVVATEEGVTLTGSDADISIESFIPVEEDGKEIVEVKQSGSIVLQAKYFSEIVKKLPKETVEISVENHLMTKITSGKSEFNLNGLDSAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVSTSETRPILTGVNWKVYNSELTCIATDSHRLALRKAKIEGIVDEFQANVVIPGKSLNELSKILDESEEMVDIVITEYQVLFRTKHLLFFSRLLEGNYPDTTRLIPAESKTDIFVNTKEFLQAIDRASLLARDGRNNVVKLSTLEQAMLEISSNSPEIGKVVEEVQCEKVDGEELKISFSAKYMMDALKALDSTEIKISFTGAMRPFLIRTVNDESIIQLILPVRTYLast
1 -4.400sp|Q2LD37|K1109_HUMAN Uncharacterized protein KIAA1109 OS=Homo sapiens GN=KIAA1109 PE=1 SV=2  ali   4.........................................................................................PCWGLDIVCGKGTDFNY-ADRQRDCLQVLKVSEIAQPGRPRQILAFELRMNIIADATIDLLFTKNRETNAVHVNGAGSYLEINIPMTVEENGYTPAIKQLLHVDATTSMQYRTLLEAEMLAFHINA-MPQTWQCELEVYKATYHFIFAQKNFFTDLIQDSPPDIFSFVPYTWNFKIMFHQFEMIWAANQHNWIDCSTKQQENVYLAACGETLNIDFS----------LPFTDFVPATCNTKFS----------LRGEDVDLHLF.......................... 270
2 -4.290sp|Q9Y4C1|KDM3A_HUMAN Lysine-specific demethylase 3A OS=Homo sapiens GN=KDM3A PE=1 SV=4  ali   16  1.................................................................................................................................................................................AYKTFSWLKCVKSQIHEPENLMPTQIIPGKALYDVGDIVHSVRAKWGI.......................................................................................................................................................... 48
3 -3.930tr|F5GXK0|F5GXK0_HUMAN Uncharacterized protein OS=Homo sapiens GN=ANK3 PE=4 SV=1  ali   18  3...............................................................................................................................................................................................................................................................................................................................DVEEGEDAMTGDTDKYLPQDLKELGDDSLPAEGYMGFS...................... 41
4 -3.830sp|Q5VZK9|LR16A_HUMAN Leucine-rich repeat-containing protein 16A OS=Homo sapiens GN=LRRC16A PE=1 SV=1  ali   13  5.........................................................................................................................................SSDVPRELIESIKDVIGRKIKISVKKKVKLEVKGDKVKVLVLTSCRAFLVTARIPTKLELT---------SYLEIHGVVCSKSAQMIVETEKCSISMKMASPEDVSEVLAHIGTCLRKIFPGLSPVRIM................................................................................................................. 127
5 -3.690sp|Q9UL63|MKLN1_HUMAN Muskelin OS=Homo sapiens GN=MKLN1 PE=1 SV=2  ali   13  10.....................................................................................................................IRKHRFEEKAQVDPLSALKYLQNDLYITVDHS--PEETKEFQLLASALFKSGSDFTALGFSDVDHTYAQRTQLFDTLVNFFPDSMTPPKGNLVDLITL.................................................................................................................................................................... 106
6 -3.630tr|Q5QPA5|Q5QPA5_HUMAN Mitochondrial ribosomal protein S18A (Fragment) OS=Homo sapiens GN=MRPS18A PE=2 SV=2  ali   31.........................................................................................................................................................................................................................................VDIRSVNYTHHPMPT------FPLPWAFPLAPSELQRELQRLSPLPRHSG................................................................................................ 74
7 -3.570sp|Q8ND23|LR16B_HUMAN Leucine-rich repeat-containing protein 16B OS=Homo sapiens GN=LRRC16B PE=2 SV=2  ali   12  1......................................................................................................................................MAKPSVELTRELQDSIRRCLSQGAVLQQHHVKLETKPKKFRVLALTSWRLHLFLLKVPAKVESS---------NVLEIRAFNTLSQNQILVETERGMVSMRLPSAESVDQVTRHVSSALSKVCP......................................................................................................................... 118
8 -3.410sp|P01266|THYG_HUMAN Thyroglobulin OS=Homo sapiens GN=TG PE=1 SV=5  ali   19  79............................................TQGHFQLQLPPGKMCSADYADLLQTFQVFILELTARGFCQIQVKTFGTLVSIPVCNNSSVQVGCLTRE-RLEDIPVASLPDLHDIERALVGKDLLGRFTDLIQSGSFQLHLDSKTFPAETI...................................................................................................................................................................................................................... 209
9 -3.300sp|Q6ZTY8|CL063_HUMAN Putative uncharacterized protein C12orf63 OS=Homo sapiens GN=C12orf63 PE=2 SV=2  ali   12  10.....................KDEITLSMLKSMLLMEAEDRLNCSAGELEIVVEARLQLAAVALQRHRAAYSAAIVFSTLTLLQ....................................................................................................................................................................................................................................................................................................... 85
10 -3.240sp|Q8NEB7|ACRBP_HUMAN Acrosin-binding protein OS=Homo sapiens GN=ACRBP PE=2 SV=1  ali   17  6.............................................................................................................................................................................................................................................................................................................LLASQSLSIGNQVGSPESGRFYGLDLYGGLHMDFWCARLATKGCEDVRVSG........................... 56

FFAS is supported by the NIH grant R01-GM087218-01
1 4 3 0 4 3   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Zhang Y, Stec B, Godzik A. Between order and disorder in protein structures: analysis of "dual personality" fragments in proteins. Structure. 2007 Sep;15(9):1141-7.