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Query: gi|30260207|ref|NP_842584.1| hypothetical protein (BA_0013) [Bacillus anthracis str. Ames], from B.anthracis

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTTAHISGDWRTRYQHVTSFYFKTNHKVWCKDIMSLLHTHIPMIIFIDMKGVNMDLIIQTFPLDGKTLYYVQCPVCKNNRILNSGANVSRIISDDTFRKLCGCTCDVKQTATKVEAPKKVKKEAVKKEAAPKRTGKVLTAVINGKEMTVKEIAEAYDISTSTVRQRINAGKSESEIIAPTKKKLast
1 -8.8104lg2_A mol:protein length:146 Polymerase cofactor  ali model follow..  17  10..................NLYFQSKPYISAKDLKEIMYDHLP-------FGTAFHQLVQVICKIGKDNNLLDTIHAEFQASLADGDSPQCALIQITKR-FQDVPPPIIHIRSRGDIPRACQKSLRPAPPSPKRGWVCLFKMQDGKTLGLK................................. 139
2 -8.4104hob_A mol:protein length:69 Putative uncharacterized protein  ali model follow..  10  2.........................................................................................................................SHMASNPISEEMNLKILAYLGTKQGAKAVHIAQSLGAQRSEVNRHLYRMSEDGRVR...... 57
3 -8.3104wcg_A mol:protein length:98 ORF112  ali model follow..  10  17...........................................................................................................GAEKVKTTASEAIPALPRLNPISEEMNLKILAYLGTKQGAKAVHIAQSLGAQRSEVNRHLYRMSEDGRVRKHPQHP 92
4 -8.2903vwb_A mol:protein length:143 Virulence regulon transcriptional activator virB  ali model follow..  20  1..............................................................................................................MGSSSSGLVPRGSHMAKEHSIRELGIGLNFLKV-SGMSYKDIAKKENLSRAKVTRAFQAASVPQEIIS..... 67
5 -8.1304w5v_B mol:protein length:122 SUMO-activating enzyme subunit 2  ali model follow..  11  1.......................................................................GPLGSASKPEVTVRLNVHKVTVLTLQDKIVKEKFAMVAPDVQIEDGKGTILISSEEGETEANNHKKLSGIRNGSRLQADDFLQDYTLLINILHSEDLGKDVEFEVVGDAPEK 114
6 -7.9804gh9_A mol:protein length:146 Polymerase cofactor VP35  ali model follow..  16  10..................NLYFQSKPNLSAKDLALLLFTHLP-------NNTPFHILAQVLSKIAYKSGKSGAFLDAFHQILSEGENAQAALTRLSRT-FLGVVPPVIRVKNFQTVPRPCQKSLRAVPPNPTKGWVCVYSSEQGETRALK................................. 139
7 -7.6904ldz_A mol:protein length:203 Transcriptional regulatory protein DesR  ali model follow..  15  41..............................QDAVDFVKKRQPDVCIMDIEMPGKTGLEAAEELKDTGCKIIILTTFARPGYFQRAIKAGVLLKDSPSEELANAIRSVMNGKRIYA-PELMEDLYSEANPLTDREKEVLELVADG--KNTKEIAQELSIKSGTVRNYIS............... 178
8 -7.6704lji_A mol:protein length:141 Cytochrome c-550-like protein  ali model follow..  12  38...............................................................RGKRLFEENCKNCHVGG--STLPNPLVSLSLKDLKGATPPRDTIASLVAFQRSPKSYDGSEESYSCRRV-----------EDWLTTEQLETLAAFILRAAAVAPGWGVESFPDSAP.... 141
9 -7.4705j6x_A mol:protein length:72 Z-DNA binding protein kinase  ali model follow..  14  2.........................................................................................................................SHMAKMSAENEIEMRICDYLRRHGRSTVQDIFKELKLEKSTVNRHLYSLQASKQV....... 56
10 -7.4702cob_A mol:protein length:70 LCoR protein  ali model follow..  16  1...................................................................................................................GSSGSSGRGRYRQYNSEILEEAISVVMSGK-MSVSKAQSIYGIPHSTLEYKVKE.............. 53
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Jaroszewski L, Godzik A. Tolerating some redundancy significantly speeds up clustering of large protein databases. Bioinformatics. 2002 Jan;18(1):77-82.