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Query: gi|30260203|ref|NP_842580.1|(removed signalp:1-28) D-alanyl-D-alanine carboxypeptidase (BA_0009) [Bacillus anthracis str. Ames], from B.anthracis

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst ETGSALNIEAGAAILVEANSGKILYQKNADELLSIASMTKMMSEYLVHEAVDKGKFKWDQKIKVSEYAYKVSQDASLSNVALENGGSYTVKELYEAMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKELGLKNYKFVNSTGLTNKDLKGMHPEGTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIPKKEFRPEKEKFAMSNWNWMLKGLVKEYDGVDGLKTGSTPEAGDCFTGTVERNGMRFISVVIKTSSHTARFDETKKLYDYGFANFEMKQMYKKGSSVKGQETVRVENAKDKDVAVQTKQAISLPVPKGSKEVYKTELKESSKGQEAPIKKGAALGQMVITPKDTNDPGFLTGKSLQVDLVTTSEVEEANWFTRAMRGIGSFFSGIWNSAVDTVKGWFLast
1 -88.800PF00768.20; DACC_ECOLI/28-266; D-alanyl-D-alanine carboxypeptidase  ali follow..  34  3QTVEAPSVDARAWILMDYASGKVLAEGNADEKLDPASLTKIMTSYVVGQALKADKIKLTDMVTVGKDAWATGNPAGSSVMFLKPGDQVSVADLNKGVIIQSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLD--------------APGQFSTARDMALLGKALIHDVPEEYAIHKEKEFTFNK----IRQPNRNRLLWSS---NLNVDGMKTGTTAGAGYNLVASATQGDMRLISVVLGAKT....................................................................................................................................................... 239
2 -27.000PF07943.13; DACA_HAEIN/282-373; Penicillin-binding protein 5, C-terminal domain  ali follow..  21  1..................................................................................................................................................................................................................................................................................FETFKTLEAGKEIS---EQRVYYGDKNSVKLGALMDHFITIPKGKQSEVKARYELADKNLQAPLVKGQVIGKVVYQLDGKDI--------ASANLQVMNDVGE.............................. 92
3 -22.600PF13354.6; Q31MT6_SYNE7/133-334; Beta-lactamase enzyme family  ali follow..  20  2..................DTGNYV-DINGTTSIPAASTIKIPVLAALMEAVQQGKVRLDEQLTMTQDLVASE---AGAMQYQPVGSKFTVLETAIEMIRISDNTATNLLIARLGGIEA-----VNQRFAAWGLQTTRIRNLL--------------PDLEGTNSTTPKEMVELLAKVENG--SLLDPRSRDRFF-----AVLRTTETNTLLSRGLGEEATI-AHKTGDIAMVVGDVGLIDMPSGKRYIAA............................................................................................................................................................. 202
4 -10.400PF00144.24; P95207_MYCTU/41-390; Beta-lactamase  ali follow..  13  11......QAHLKAVLVRVTVAGKEVVTRTTAMHFRNGAVAISYVATLLLKLVDEKKLRLDDRVTLGQLAQMTSGYPDYVLLYANPFRQWTTQELLDGTNWNYAHTNYLLLGEKAAG--QDMPTLLQRKVSPLGLTATANSDTPAIPEPALHAFTSERRTHGAIQTTTIYDMEATAVGIGSG--RLLSADSYKKMVSTELRGKTRAQPGCPTCFEQNDGYSYGLGIVISGHMFAGYAAVEAYLPSQRVAVAVAVTYAPEAFDDQGNYRNQ........................................................................................................................................... 345
5 -8.280PF00905.22; YQGFA_BACSU/352-682; Penicillin binding protein transpeptidase domain  ali follow..  11  1..........AFVVMMDPRNGEVLALGAMTSSYAMGSAVKGATVLT---GLQTGAINLNTVFKDEPLYIGQDKRGKKS----QNLGPVGIQTALE----KSSNVFMFKTAIAVGKGDTSAFDTFRNYFSQFGLGVKTGIDMTGYKGTSRLSGFLLDFAIGQYDTYTPLELAQYVSTIANG-PEVLNKVDMKSSYIEEVQAGFRRVATKGTAAGQLASASYKPAAKTGTAQSFYTTLVAYAPADNPEIAISVV........................................................................................................................................................... 307
6 -6.280PF02113.15; DACB_ECOLI/19-469; D-Ala-D-Ala carboxypeptidase 3 (S13) family  ali follow..  11  19...........ALMVQKVGASAPAIDYHSQQMALPASTQKVITALAALIQLGDGNVLIDTSAIVDRNCFSVQTQVNEPGTVVASKQSAPLHDLLKIMLKKSDNMIADTVFRMIGGTWRAGSDAVRQILRQVDIGNTIIADGSGLSRH---------------NLIAPATMMQVLQYIAQH-DNELNFISMLPLAGYDGSLQYRAGLHQAGVDGKVS-------AKTGSLQGV-YNLAGFITTASGQRMAFVQYLSGYAVEPADQRNRRI.......................................................................................................................................... 442
7 -6.180PF15309.6; F6V4S4_MONDO/188-310; ALMS motif  ali follow..  12  2........................................................................................................VKAGLQECLERNRPDFISSSGARVKRLKLQHLLQRERDALFNTTEQQKNQVNSSVSLNRTITKKEMVQRSKRMYEQLPEVRKKREEEQRRSAYTAYRFKAQLYKMKITNRV................................................................................................................................................................................................ 119
8 -5.510PF04960.15; D6XZS5_BACIE/48-344; Glutaminase  ali follow..  14  19............GIVMARPDGTMLKAGDHDVPFTLQSISKVISFIQVCLDYGISEVLEKVDVEPTGDAFNLHKPGRPFNPMINAG-ALTVASMLCERTPEGKVSSTLDLLEAMLGKRPGINEQVFESEWETAHRNAYYLKENGFLDCPVEDALNVYLKA----EVHTEDIAKIGLILAYD---YDPVTDQRHFPIEVARLTKAL-----MVTCGMYNASGKFAARVGLPSKSGVSIMTVVSERAGSRYSPVPH.......................................................................................................................................................... 261
9 -5.380PF18763.1; A0A1B0VFX4_9CAUD/35-168; ddrB-like ParB superfamily domain  ali follow..  11  1..AKGDEVKTAFDIV---DASALLVSNTLDGKINPDYPQELQP---------RDRTRASSLLQVNQISKDLRPAQLTDSGLSSHGAPIIGED-----AVESGNGRTMGIIKAYQGNADRYREYLIEHATEFGIR................................................................................................................................................................................................................................................................................. 117
10 -5.160PF04660.12; CAPSD_BBTVA/6-175; Nanovirus coat protein  ali follow..  14  22KAATSHDYSSSGSILVPENTVKVFRIEPTDKTLPRYFIWKMFMLLVC--KVKPGRILHWAMIKSSWEINQPTTCLEAPGLFIKPEHSHLVKLVCSGELEAGVATGTTVLRKNVTEVDYLYLAFYCSSGVSINYQNRITYHV.......................................................................................................................................................................................................................................................................... 170

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Rychlewski L, Zhang B, Godzik A. Fold prediction by a hierarchy of sequence, threading, and modeling methods. Protein Sci. 1998 Jun;7(6):1431-40.