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Query: gi|30260203|ref|NP_842580.1|(removed signalp:1-28) D-alanyl-D-alanine carboxypeptidase (BA_0009) [Bacillus anthracis str. Ames], from B.anthracis

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst ETGSALNIEAGAAILVEANSGKILYQKNADELLSIASMTKMMSEYLVHEAVDKGKFKWDQKIKVSEYAYKVSQDASLSNVALENGGSYTVKELYEAMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKELGLKNYKFVNSTGLTNKDLKGMHPEGTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIPKKEFRPEKEKFAMSNWNWMLKGLVKEYDGVDGLKTGSTPEAGDCFTGTVERNGMRFISVVIKTSSHTARFDETKKLYDYGFANFEMKQMYKKGSSVKGQETVRVENAKDKDVAVQTKQAISLPVPKGSKEVYKTELKESSKGQEAPIKKGAALGQMVITPKDTNDPGFLTGKSLQVDLVTTSEVEEANWFTRAMRGIGSFFSGIWNSAVDTVKGWFLast
1 -98.700d1xp4a2 e.3.1.1 (A:25-293) D,D-carboxypeptidase DacA, N-terminal domain {Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]}  ali model 3D-neighbors follow..  44  1.....FTIAAKHAIAVEANTGKILYEKDATQPVEIASITKLITVYLVYEALENGSITLSTPVDISDYPYQLTTNSEASNIPME-ARNYTVEELLEATLVSSANSAAIALAEKIAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKDEENKLSAYDVAIVARNLIKKYPQVLEITKKPSSTFAG----MTITSTNYMLEGMPAYRGGFDGLKTGTTDKAGESFVGTTVEKGMRVITVVLNADHQDARFTATSSLMDYISSTF.................................................................................................................................... 269
2 -94.100d1tvfa2 e.3.1.1 (A:21-315) Pencillin binding protein 4 (PbpD), N-terminal domain {Staphylococcus aureus [TaxId: 1280]}  ali model 3D-neighbors follow..  31  20.YAGLSAAYEPTSAVNVSQTGQLLYQYNIDTKWNPASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYIMSTLPELSNTKLYPGQVWTIADLLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAIGMKNTHFVNPTGAENSRLRSFAPTKYKDQERTVTTARDYAILDLHVIKETPKILDFTKQLAPTTHA----VTYYTFNFSLEGAKMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVIMGAGDEKQRNMMGNALMERSFDQY.................................................................................................................................... 295
3 -90.200d3beca2 e.3.1.1 (A:4-262) Penicillin-binding protein 5, N-terminal domain {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  33  6.IPGVPQIDAESYILIDYNSGKVLAEQNADVRRDPASLTKMMTSYVIGQAMKAGKFKETDLVTIGNDAWATGNPKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAGSQDAFVGLMNSYVNALGLKNTHFQTVHGLD--------------ADGQYSSARDMALIGQALIRDVPNEYSIYKEKEFTFNG----IRQLNRNGLLWD---NSLNVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGGRTFKGREAESKKLLTWGFR...................................................................................................................................... 258
4 -82.500d1es5a_ e.3.1.1 (A:) D-ala carboxypeptidase/transpeptidase {Streptomyces sp., K15 [TaxId: 1931]}  ali model 3D-neighbors follow..  25  1....KPTIAAVGGYAMNNGTGTTLYTKAADTRRSTGSTTKIMTAKVV---LAQSNLNLDAKVTIQKAYSDYVVANNASQAHLIVGDKVTVRQLLYGLMLPSGCDAAYALADKYAARVKSFIGKMNTAATNLGLHNTHFDSFDGIG--------------NGANYSTPRDLTKIASSAMKN-STFRTVVKTKAYTAKTVTKTDTWKNTNGLL----SSYSGAIGVKTGAGPEAKYCLVFAATRGGKTVIGTVLASTSIPARESDATKIMNYGFA...................................................................................................................................... 259
5 -79.100d6azia_ e.3.1.0 (A:) automated matches {Enterobacter cloacae [TaxId: 716541]}  ali model 3D-neighbors follow..  24  1....QPQIASGSAMIVDLNTNKVIYASHPDLVRPIAXITKLMTAMVVLDA----HLPLDEKLKVDISHTP---EMKGVYSRVRLNSEISRKNMLLLALMSSENRAAASLAHHYPGGYDAFIRAMNAKAKALGMNNTRFVEPTGL---------------SIHNVSTARDLTKLLIASKQ-YPLIGQLSTTREEMATNPAYTLPFRNTNHLVYR---ENWNIQLTKTGFTNAAGHCLVMRTVFNGKPVALVVMDAFGKYTHFADASRLRTWIETGKVQPV................................................................................................................................ 251
6 -27.300d3beca1 b.105.1.1 (A:263-355) Penicillin-binding protein 5, C-terminal domain {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  20  1..................................................................................................................................................................................................................................................................................FETVNPLKVGKEFA---SEPVWFGDSDRASLGVDKDVYLTIPRGRMKDLKASYVLNSSELHAPLQKNQVVGTINFQLDGKTIE--------QRPLVVLQEIPEG............................. 93
7 -24.300d1xp4a1 b.105.1.1 (A:294-386) D,D-carboxypeptidase DacA, C-terminal domain {Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]}  ali model 3D-neighbors follow..  18  1...................................................................................................................................................................................................................................................................................TLRKIVQQGDAYQD-SKAPVQDGKEDTVIAVAPEDIYLIERVGNQSSQSVQFTPDSKAIPAPLEAGTVVGHLTYEDKDLIGQGYITTERPSFEM...................................... 93
8 -23.500d1m40a_ e.3.1.1 (A:) beta-Lactamase, class A {Escherichia coli, TEM-1 [TaxId: 562]}  ali model 3D-neighbors follow..  19  20...........GYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKH----LTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKE-----LTAFLHNMGDHVTRLDRWE--------PELNEAIPNDERDTTTPAAMATTLRKLLT-------------------GELLTLASRQQLIDWMEADKVAGPLLKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQI........................................................................................................................................... 252
9 -23.200d5tfqa_ e.3.1.0 (A:) automated matches {Bacteroides cellulosilyticus [TaxId: 537012]}  ali model 3D-neighbors follow..  16  1NRTPKQKIEQQIDSLLKDKKATVVAVYNNQIHFPLLSVFKFHVGLAVLDKMDKGHIALDSLIEVKSSQLKSNTYSPLRDKFPDQDITISLGELLKYTISKSDNNTCDILIEYVGGIDQ-----VNEYVKSLGIKDCNLAA---------TETLMHTSGDTDLNWSTPEEVVRLLNIADK-------------------QPLFGTQYKDFLQAIMQETSTGKDKLKTGSSDRTPEGIKIADNPNGQKYYIAVFVMESQETDADNAAIIASISKIVYD................................................................................................................................... 272
10 -22.500d1e25a_ e.3.1.1 (A:) beta-Lactamase, class A {Pseudomonas aeruginosa, PER-1 [TaxId: 287]}  ali model 3D-neighbors follow..  17  20...........GVAVWGPDDLEPL-LINPFEKFPMQSVFKLHLAMLVLHQVDQGKLDLNQTVIVNRAKVLQNTWAPIMKAYQGDEFSVPVQQLLQYSVSHSDNVACDLLFELVGGPAA-----LHDYIQSMGIKETAVVANE--------AQMHADDQVQYQNWTSMKGAAEILKKFEQ-------------------KTQLSETSQALLWKWMVETTTGPERLKTGTSQIKAGKTAATNDPDGRPLLVAVFVKDSAESSRTNEAIIAQVAQTAYQ................................................................................................................................... 269
11 -21.300d2qpna_ e.3.1.0 (A:) automated matches {Klebsiella pneumoniae}  ali model 3D-neighbors follow..  16  20...........GVAIVDPQGEIVA-GHRMAQRFAMCSTFKFPLAALVFERIDSGTERGDRKLSYGPDMIVEWSPATER---FLASGHMTVLEAAQAAVQLSDNGATNLLLREIGGPAA-----MTQYFRKIGDSVSRLDRKE--------PEMGDNTPGDLRDTTTPIAMARTVAKVLY-------------------GGALTSTSTHTIERWLIGNQTGDATLKTGTCANGGRNDIGFFKAQERDYAVAVYTTAPKLSAVERDELVASVGQVITQ................................................................................................................................... 260
12 -20.800d5hw3a1 e.3.1.0 (A:28-291) automated matches {Burkholderia vietnamiensis [TaxId: 269482]}  ali model 3D-neighbors follow..  16  19...........GVFAIDTGSGRTL-GHRADERFLMCSTFKGLLAAQILARVDSGSERLDRLVHYTEKDLIFTSPVTKANV---AQGAMSIEALCRAVLVESDNTAAILLMRSAGGPAA-----LTRFVRGLGDTVTRSDRYE-------------NRYHGVLDTTTPKAIAATAQRLLL-------------------GDVLSAGSRARLERGMTDCKPGLNRIRPGTSVDRETNDYALVRPPGRAPLLVAVYYDAPGVSMDAREAVL........................................................................................................................................... 249
13 -20.400d2p74a_ e.3.1.1 (A:) automated matches {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  13  21...........GVALIDTADNTQV-LYRGDERFPMCSTSKVMAAAAVLKQSETQKQLLNQPVEIKPADLVNYNPIAEKH----VNGTMTLAELSAAALQYSDNTAMNKLIAQLGGPGG-----VTAFARAIGDETFRLDRTE--------PTLNTAIPGDPRDTTTPRAMAQTLRQLTL-------------------GHALGETQRAQLVTWLKGNTTGAASIKTGSGDYGTTNDIAVIWPQGRAPLVLVTYFTQPQQNAESRRDVL........................................................................................................................................... 252
14 -20.400d3p09a_ e.3.1.0 (A:) automated matches {Francisella tularensis [TaxId: 177416]}  ali model 3D-neighbors follow..  13  18...........GIYTLNTDDKTNI-KYNESYHFPICSVFKFLLVGAILDYDMHNQGFLDKKIPINQDDIGKL---GYAPITAKNVGKTLTISQLNYAAILSDSPASNILVRELGGLQN-----LNKFIKKLGDNDTIITADE--------PEINYTQPHSNINKTTPKAITKDIYKLAF-------------------GNILDKKHKDIFIKYLQDNNTGANRIKTGTCGQYA--VAIIWPKNQQPIALGILYTNPNDKNAPSNEEII........................................................................................................................................... 252
15 -17.000d1djaa_ e.3.1.1 (A:) beta-Lactamase, class A {Staphylococcus aureus [TaxId: 1280]}  ali model 3D-neighbors follow..  18  16...........GVYALDTKSGKEV-KFNSDKRFAYASTSHAINSAILLEQVPYNKL--NKKVHINKDDIVAYSPILEKY----VGKDITLKALIEASMTYSDNTANNKIIKEIGGIKK-----VKQRLKELGDKVTNPVRYE--------IELNYYSPKSKKDTSTPAAFGKTLNKLIA-------------------NGKLSKENKKFLLDLMLNNKSGDTLIKSGQAITYASRVAFVYPKGQSEPIVLVIFTNKDNKSDKPNDKLI........................................................................................................................................... 247
16 -11.000d5ctma_ e.3.1.0 (A:) automated matches {Bacillus pumilus [TaxId: 1408]}  ali model 3D-neighbors follow..  16  16...........TFVIQEVKEKSPWVKKRAKERFAPQSTFKVANALI---GLQTGAVRDEYDIKYWDGVKR-----------------------------IDNWNRDHTLGSGMRDSVVWYYQAM---ARDIGEERNHWVKAIHYGNKDISGGIDQFWLSSTLRISPIEQVRFLKQLYEETLP-----------------DLKNMRTVKRMMVQEEEKHATLYG-KTGSGSDIGW-YVGFIKHEHKTYILATNIKGTGIEAKDITYRILK.......................................................................................................................................... 224
17 -10.400d1k38a_ e.3.1.1 (A:) Class D beta-lactamase {Salmonella typhimurium, OXA-2 [TaxId: 90371]}  ali model 3D-neighbors follow..  12  19...........TIVVADERQADRAMPVRSKKRYSPASTFKIPHTLF---ALDAGAVRDEFQIFRWDGVNR-----------------------------FAGHNQDQDLRSAMRNSTVWVYELF---AKEIGDDKRRYLKKIDYGNADPSTSNGDYWIEGSLAISAQEQIAFLRKLYRNELP-----------------RVEHQRLVKDLMIVEAGRNWILRA-KTGWEGRMGW-WVGWVEWPTGSVFFALNRMDDLFKREAIVRAILR.......................................................................................................................................... 234
18 -10.300d4ztka_ e.3.1.0 (A:) automated matches {Legionella pneumophila [TaxId: 933093]}  ali model 3D-neighbors follow..  15  21TAVKQYHAKSGVIAIADPQTGNIIAFAEKSRIFSPGSTIKPFI---AAAAINSGNSSETKNYDCHSPYYIAGKTFTNYN---SNVESASLADAIA----KSINVCLIRVSQEAG------VPVIRKKLTEFGFDMNSWWQADQSDDLQLA------------MAALGENIPVTIESLIKSYAILANKGHSFDRGNSAIISETSTNSINHMLENAVTNGTGIPGVKTGTVIENNALFAGYVPADNPRYVLLVV........................................................................................................................................................... 266
19 -10.100d4jf5a_ e.3.1.0 (A:) automated matches {Acinetobacter baumannii [TaxId: 470]}  ali model 3D-neighbors follow..  14  21...........VLVIQTDKKINLYGLSRANTEYVPASTFKMLNALI---GLENQKTDINEIFKWKGEKRSFTA------------------------------EKDMTLGEAMKLSAVPVYQEL---ARRIGLDLQKEVKRIGFGNAEIGQQVDNFWLVGPLKVTPIQEVEFVSQLAHTQLP-----------------SEKVQANVKNMLLLEESNGYKIFG-KTGWAMDIK--LTGWVEQPDGKIVAFALNMEMRSEMPASIRNEL........................................................................................................................................... 231
20 -9.840d4ieda_ e.3.1.0 (A:) automated matches {Fusobacterium nucleatum [TaxId: 76857]}  ali model 3D-neighbors follow..  15  18...........TFVVYDLKNDKIDYLDRANERFYPASSFKIFNTLI---GLENGIVKNVDEMFYYYDGSKVFLDSWAKDSNLRYAIKVSQVPAYKKL------------------------------ARELGKERQEGLNKLNYGNKEIGSEIDKFWLEGPLKISAMEQVKLLNLLSQSKLP-----------------KLENQEQVKDITILEKKDDFILHG-KTGWATDNI--FVGWIETSDNIYSFAINDSKFLPKREEIVREYFK.......................................................................................................................................... 236
21 -9.840d4u3tb1 e.3.1.0 (B:237-573) automated matches {Neisseria gonorrhoeae [TaxId: 528353]}  ali model 3D-neighbors follow..  17  17KAVEYHQAKAGTVVVLDARTGEILRNRAVTDMIEPGSAIKPFV---IAKALDAGKTDLNERLNTQPYKIGPSPVRDDTHVY----PSLDVRGIMQ----KSSNVGTSKLSARFGAEE------MYDFYHELGIGVRMHSGFPGETAGLLRNWRR--RPIEQATMSFGYGLQLSLLQLARAYTALTH--SFEKQAVAPQGKRIFKESTAREVRNLMVSVTEPGGTKTGTARKLVGTFIGFAPAKNPRVIVAVT........................................................................................................................................................... 285
22 -9.670d4f7ya_ e.3.1.1 (A:) Class D beta-lactamase {Escherichia coli, OXA-1 [TaxId: 562]}  ali model 3D-neighbors follow..  13  17...........CFLLYDASTNAEIAQFNKATQMAPDSTFDIALSLM---AFDAEIIDQKTIFKWDKTPKGMEI-----------NSNHTPKTWMQ----FSVVWVSQEITQKIG------LNKIKNYLKDFDYGNQDFSGDKE------RNNGLTEAWLESSLKISPEEQIQFLRKIINHNLPV--------------KNSAIENTIENMYLQDLDNSTKLYG-KTGAGFTANR-FEGFIISKSGHKYVFVSALTGNLGSNLTSSIKAK.......................................................................................................................................... 238
23 -9.640d3pbta2 e.3.1.0 (A:222-563) automated matches {Pseudomonas aeruginosa, PA01 [TaxId: 208964]}  ali model 3D-neighbors follow..  14  16NALLENGAKAGSLVIMDVKTGEILAMTNMIDVFEPGSTVKPFS---MSAALASGRWKPSDIVDVYPGTLQIGRYT------IRDVSRNSRQLDLTGILIKSSNVGISKIAFDIG------AESIYSVMQQVGLGQDTGLGFPGERVGNLPNHRK--PKAETATLAYGYGLSVTAIQLAHAYAALAN--SMTRVDRVPDGVQVISPEVASTVQGMLQQVVEAQG-KSGTARKVGYLFAGFAPATDPRIAMVVV........................................................................................................................................................... 302
24 -9.630d3wrzc_ e.3.1.1 (C:) AMPC beta-Lactamase, class C {Chromohalobacter sp. [TaxId: 169132]}  ali model 3D-neighbors follow..  16  17........QIPGMAIALVRPEGTTISHDDDTLFEIGSLSKTLTATLASLAEVEGKLDFDAPVS-------------LPELEGSAFDDISGLNLGTGESRTYSNLGIGLLGLETA-LDGEFVPTMRAKVAPLGMQDTWYDVPEARMADYAMGEDKDGQPTRVSPKTTAADLAKLVRANLHDAELQQAIDATRQGHYRVGDMTQALIWEQYSLPVAPETLRAGQGYKTGSTQ--GFGYIVMLPGKHTGLVMLANKNYPNDARVEAAYRILS.......................................................................................................................................... 351
25 -9.190d1ei5a3 e.3.1.1 (A:3-335) D-aminopeptidase, N-terminal domain {Ochrobactrum anthropi [TaxId: 529]}  ali model 3D-neighbors follow..  13  17......NYKGPGGVVAVVKDGEVVLQHTLDTRMPICSVSKQFTCAVLLDAVGEPELLDDARPAVRDLCNNQSGLRDYWALSADPEGVFLPAQAQSLLRRLKCNGNFRILAEAHTG--RTLVDILSERIAPAGMKRAELISDTALFDECTGATNRIQWMGDAGICASLNDMIAWEQFIDAT-------RDDESGLYRRLSGPQTFKDGVAAPYGFGLNLHETGGKRLTGHGGALRGWRCQRWHCADERLSTIAMFNFEGGASEVAFKLMNIALGV..................................................................................................................................... 330
26 -9.150d1yqsa_ e.3.1.1 (A:) automated matches {Streptomyces sp. [TaxId: 31952]}  ali model 3D-neighbors follow..  13  11AVLHTALSQGAPGAMVRVDDNGTIHQLTTTDRFRVGSVTKSFSAVVLLQLVDEGKLDLDARITVRQVMSHRSGLYDYTNFESVRNKVFSYQDLITGAAYSYSNTNFVVAGEKLTG--HSVATEYQNRITPLNLTDTFYVHPD-IPGTHANGYLTPDEAGGAAVISSTQDLDTFFSALMSG-AAQLAQMQQWTTVNSTQGYGLGLRRRDLSCGISVYGHTG---------TVQGYYTYAFASKDGKRSVTALANTSNNVNVLNTMARTLE.......................................................................................................................................... 338
27 -9.090d1xa1a_ e.3.1.1 (A:) Regulatory protein BlaR1 {Staphylococcus aureus [TaxId: 1280]}  ali model 3D-neighbors follow..  13  14DKSKIFGSNSGSFVMYSMKKDKYYIEKESRKRYSPNSTYKIYLAMF---GLDRHIINDENSRMSWNHKHYPFDAWNKEQ--------------LNTAMQNSVNWYFERISDQIP------KNYTATQLKQLNYGNKNLGSYKSY---------------EDSLKISNLEQVIVFKNMMEQNNHF---------------SKKAKNQLSSSLLIKKNEKYELYG-KTGTGIVNGK-FVGYVITNHDKYYFATHGKPSGKNAELISEKILK.......................................................................................................................................... 240
28 -9.050d4ovda2 e.3.1.0 (A:232-571) automated matches {Atopobium parvulum [TaxId: 521095]}  ali model 3D-neighbors follow..  13  25........QGGSIMAMNPRTGEIYAAASVSSIYEPGSVFKVITTSI---GVDNNLFGPNSTFNIPTE-LQVGDNKVTDDDWRTSAMDMSVREMLR----RSSNVGMAFLETQLIGDKR-----FAEGIDKFGIGHTTGIDFPGEATGIVRSLDQ--EGPTGGNMAFGQGLAIPFIQVIRAYTAVAN-SWPTKDVISSSTASAELDMMTTVVKEGTGVRAGIYGYKTGTGQQVVASFCGIVNPSESDLMVYVG........................................................................................................................................................... 309

FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 6 1 8   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I. and Godzik A Connecting the Protein Structure Universe by Using Sparse Recurring Fragments. Structure (Camb.) (2005) Aug;13(8):1213-24