current user: public

If you have questions about the server, please let us know.

Query: gi|30260214|ref|NP_842591.1| hypothetical protein (BA_0020) [Bacillus anthracis str. Ames], from B.anthracis

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .
# Score Template Links and tools%idFirst MMRGGMGNMNNMMKQMQKMQKEMAKAQEELGEKTVEGTAGGGMITVIANGHKQILEVKVKEEVVDPEDIEMLQDLVLAATNDALKKADELSNSTMGKFTKGLNLPGGMFLast
1 -40.300d1ybxa_ d.222.1.0 (A:) automated matches {Clostridium thermocellum [TaxId: 1515]}  ali model 3D-neighbors follow..  59  1........INNLVKQAQKMQRDMERVQEELKEKTVEASAGGGAVTVVATGRKDIKEITIKPEVVDPDDVEMLQDLILAAVNEALRKADEMVTAEISKIT.......... 91
2 -37.900d1j8ba_ d.222.1.1 (A:) Hypothetical protein HI0442 {Haemophilus influenzae [TaxId: 727]}  ali model 3D-neighbors follow..  36  1........LGGLMKQAQQMQEKMQKMQEEIAQLEVTGESGAGLVKITINGAHNCRRIDIDPSLMED-DKEMLEDLIAAAFNDAVRRAEELQKEKMASVTAG........ 92
3 -37.800d3f42a1 d.222.1.0 (A:1-92) automated matches {Helicobacter pylori [TaxId: 210]}  ali model 3D-neighbors follow..  20  2.......DFSQLGGLLDGMKKEFSQLEEKNKDTIHTSKSGGGMVSVSFNGLGELVDLQIDDSLLE--DKEAMQIYLMSALNDGYKAVEENRKNLAFNMLG......... 92
4 -5.940d3t64a_ b.85.4.1 (A:) automated matches {Plasmodium falciparum [TaxId: 36329]}  ali model 3D-neighbors follow..  10  91..........................RSSISKTPLRLANSIGLIDAGYRGEIIAALDNTSDQEYHIKKNDKLVQLVSFTGEPLSFELVEELDETSRGEGG......... 164
5 -5.880d5idha2 d.224.1.0 (A:248-334) automated matches {Enterococcus faecalis [TaxId: 226185]}  ali model 3D-neighbors follow..  15  6...............................NLERRHRFPIGSIEMKMN-DGAIQEIKIFGDFFGLGEIKDVEDILTGVKYDKASLEEAIDQIDVKKYFGNIDLLGLIY 87
6 -5.840d1lr0a1 d.212.1.1 (A:3-123) TolA {Pseudomonas aeruginosa [TaxId: 287]}  ali model 3D-neighbors follow..  34.......................NLVSQQWRRPPSARNGMSVEVLIEMLPDGTITNASV----SRSSGDKPFDSSAVAAVRNV.......................... 89
7 -5.780d1wl8a1 c.23.16.1 (A:1-188) GMP synthase subunit A, GuaAA {Pyrococcus horikoshii [TaxId: 53953]}  ali model 3D-neighbors follow..  13  115........FKGLPKRLKVWESHMDEVKELPPKFKILARSETCPIEAMKHEELPIYGVQFHPEVAHTEKGEEILRNFAKLCGE........................... 188
8 -5.720d4pc3c2 d.43.1.1 (C:55-139) Elongation factor Ts (EF-Ts), dimerisation domain {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  16  2......................................AADGVIKTKIDGNGIILEVNCQTDFVAKDAADKVLDAAVAGKITDVEVLKAQFEEERVALVAKIG...... 72
9 -5.710d3jb9b5 d.14.1.1 (B:674-842) Pre-mRNA splicing factor Cwf10, domain IV {Schizosaccharomyces pombe 972h- [TaxId: 284812]}  ali model 3D-neighbors follow..  86........LRDDTLSTDVDKNVLNSVKEYIKQGFQWGTREGPLCDETIRN----VNFRLMDVVLAPEQIYRGGGQIIPTARRVCYSSFLTASPRL.............. 168
10 -5.680d3qdpa_ d.212.1.1 (A:) automated matches {Escherichia coli [TaxId: 83333]}  ali model 3D-neighbors follow..  14  2................ADINNYAGQIKSAIESKFYDASSYAGKLRIKLAPDGMLLDIKPEGG-------PALCQAALAAAKLA.......................... 65

FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 6 1 8   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I. and Godzik A Connecting the Protein Structure Universe by Using Sparse Recurring Fragments. Structure (Camb.) (2005) Aug;13(8):1213-24