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Query: gi|30260196|ref|NP_842573.1| chromosomal replication initiation protein (BA_0001) [Bacillus anthracis str. Ames], from B.anthracis

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MENISDLWNSALKELEKKVSKPSYETWLKSTTAHNLKKDVLTITAPNEFARDWLESHYSELISETLYDLTGAKLAIRFIIPQSQAEEEIDLPPAKPNAAQDDSNHLPQSMLNPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAYNPLFIYGGVGLGKTHLMHAIGHYVIEHNPNAKVVYLSSEKFTNEFINSIRDNKAVDFRNKYRNVDVLLIDDIQFLAGKEQTQEEFFHTFNALHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETRIAILRKKAKAEGLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLINKDINADLAAEALKDIIPNSKPKIISIYDIQKAVGDVYQVKLEDFKAKKRTKSVAFPRQIAMYLSRELTDSSLPKIGEEFGGRDHTTVIHAHEKISKLLKTDTQLQKQVEEINDILKLast
1 -121.000[L] COG0593 ATPase involved in DNA replication initiation  ali follow..  42  2..NLSNLWQSCLLQLQDQVSASDLSTWLRPLQADVVADNHIVLYASNMFVKGWVETHYLAQIQQICQTLAQNPELRISLKEGVKPAPKIVESTPNTSQAESSASVKFESHLNTKHLFDNFVEGKSNQLARAVGQKLAQAPGESANPFFLYGGTGLGKTHLLHAIGNGILADKPNARVLYIHANNFMQHMVKAVRDNKMDQFKKFYRSLDALLVDDIQFFAEKEKTQEEFFHIFNSLFETGRQIILTSDRYPKEIEKIEERLKSRFGWGLTTAIEPPDLETRVAILLKKAEEHNMNLPEEVAFFIAQRLRTNVRELEGALNRVKAMQDFKGGDIDIDFVRDTLKDILALQE-RLVTIENIQKVVAEYYRIKVSDLKSKSRARSVTRPRQIAMALAKELTNRSLPEIGRAFD-RDHTTVLNACREVPKFREQDNSIQEDWANLIRTLS 453
2 -23.500[L] COG1484 DNA replication protein  ali follow..  17  80.................................................................................................................QLGFKEFRTEGKPQCTKEYVADYEQIKDCRKNSIALLGQPGSGKTHLLTAAANELMRTC-YVPVIYFPFVEGFTDLKNDFALLE--AKLNRMKQADVLFIDDL---RATDWQLEQMYSVLNYRYLNHKPILLSSELTIEGLVRVDEALGTKI--DYLVIIKGAAYELNHRLEGVR.............................................................................................................................................................. 266
3 -15.200[L] COG2255 Holliday junction resolvasome, helicase subunit  ali follow..  16  9................................................................................................SAAVINDEESIDRAIRPK-LLTEYV-GQPHVREQEIFIQAAKQRGDALDHVLIFGPPGLGKTTLANIIANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPH------------DVLFIDEIHRL--SPVVEEILY----PAMEDYQLDIMIGEGPAARSIKLDSPLRDRFG--IVQRLEFYQVADLEHIVSRSAKCLGLELTPEGAHQLARRSRGTPRITNRLLRRVRDFAEVRADGAINGEVAMKALDMLNVDAEGFDFMDRKLDNLAAAIGEERETIEDVLEPYLIQQGFIQRTPRGRIATNHAYKHFG........................................ 329
4 -13.000[L] KOG2028 ATPase related to the helicase subunit of the Holliday junction resolvase  ali follow..  14  77................................................................................TQIHVAADDSNKRHKLSSSSHRQHQPLSERMRPR-TLDDVV-GQDHLLSPSSLLRSAVESNRLPS-IVFWGPPGTGKTSIAKSLINSSKDPSLYRFVSLSAVTSGVKDVRDAVESAKRLNLEGRKRT--VLFMDEVHRF---NKSQQDTF--LPVIEDGSILFIGATTENPS---HLITPLLSRCR---VLTLNPLKPNHVETLLRRAVDDSSVEVDDSVIEFLANNCDGDARVALNALEISATMAT-TDAVVSIDDAKEALQ-------CKHLAYDKAGEQHYNLISALHKSMRGGDANAAIYWLARMPLYIARRLIRFASEDIGHFLGMPECNVILAQCTAYLALAPKSIAVYRAIGAAQKVVK 452
5 -12.900[L] KOG0990 Replication factor C, subunit RFC5  ali follow..  15  7............................................................................AMDIDVDEIQPRKPINKGKDVVGFGPPPQSKATPWVEKYRPQSLVAAH-RDIIDTIDRLTNEN---KLPHLLLYGPPGTGKTSTILAVARKLYGPKYRNMILELNASD--DRGIDVVRQASTQSFSLGKSSVKLVLLDEADAMT--KDAQFALRRVIEK-YTKSTRFALIGNHVNKIIPALQSRC-TRF------RFAPLDGVHMSQRLKHVIEAERLVVSDCGLAALVRLSNGDMRKALNILQSTHMASKEITEEESKQITEEDVYLCTGNPLPKDI--EQISHWLLNKPFDECYKDVSEIKTRKGLAIVDIVKEITLFIFKIKMPSAVR-------VQLINDLADIEYRLSFGCNDKLQLGAIISTF. 357
6 -12.800[R] COG2607 Predicted ATPase (AAA+ superfamily)  ali follow..  14  60........................................................................................................................LAGVGRQTELLVRNTEQFIVGRPANNVLMSGARGTGKSSLVKALLHEY--ADKGLRLIEVDKSDLIGYLLTLLKECPEK----------IVFCDDLSFESGDETYKALVYATSNRRHENAGTTGMRGEIHQKEAVEEKISLSDRF--GLWLSFYPFDQNDYLAAVQNWLEDFGVPYDETALQWAQTRGSRSGRSAWQFACDWAGRLPKQRA................................................................................................................... 286
7 -12.600[O] COG1222 ATP-dependent 26S proteasome regulatory subunit  ali follow..  15  185..................................................................................................................................................VLMYGPPGTGKTLMARACASKT-----NATFLKLAGPQLVQMYIGDGARLVRDAFALAKERKPIIFIDEIDAIGAKQRTMLELLNQLDGFSSSEEVKIIAATNRVDILDPALLR--GRLD----IEFPLPNTLGRKRILQIHARKMSVRDDVNF-----DELARSTEGFNGACKAVCVEAGMEKTEISQNDFMDGIQEVLSRKKSKLL............................................................................................ 398
8 -12.200[R] COG1223 Predicted ATPase (AAA+ superfamily)  ali follow..  15  88....................................................................................................ESDPRVIETEIVRDITLDDVVGQEEAKRKAKVILEYLRNPKWAPKNVLFYGPPGTGKTMMAKALSNEA-----KTPFLSVKSTKLIGEHVGDGARRVHELYERARQLAPIVFLDEFDAIALDSEIVNALLTELDGTNSNEGICTIAATNRV---ELLDASIRSRFEEEIEFRL--PSYEERLEILRRNLEEFPVPVKARLELVAAASEGFSGRDLVEKVIKLHKAIAEGKDKIETEDLLTAAEKVKMPSRQPPKQMF......................................................................................... 351
9 -12.100[O] KOG0728 26S proteasome regulatory complex, ATPase RPT6  ali follow..  16  185..................................................................................................................................................VLLYGPPGTGKTLLARAVAHHT-----ECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPIIFMDEIDSIGSSQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLR--GRID----IEFPPPNEEARLDILKIHSRKMNLTRGINL-----RKIAELMPGASGAVKGVCTEAGMRRVHVTQEDFEMAVAKVMQKDSEKNM............................................................................................ 398
10 -12.000[O] KOG0739 AAA+-type ATPase  ali follow..  18  163..................................................................................................................................................ILLFGPPGTGKSYLAKAVATEA----NNSTFFSVSSSDLMSKWLGESEKLVKNLFEARQHKPSIIFIDEVDSLCGSRNENEEFLVQMQGVGNNNDGTVLGATNIPWV---LDSAIRRRFEKRIYIPL--PEEAARAQMFRLHLGSTPHNLTDANIHELA-------RKTEG-------YSGADISIIVRDSLMQPVRKVQSATHFKKVC........................................................................................... 359
11 -11.800[DL] KOG2035 Replication factor C, subunit RFC3  ali follow..  14  7.................................................................................................................KYRPKDLLGKDGVDYHIEQANHLKFLSADCMPHLLFCGPSGAGKKTRIKCLLRELSPSNKKLEIQTVSSNYHIEMTPSDVGIYDRVVVQDLVKEMKVVVLCEADSLT--RDAQHGLRRTMEK-YANNCKIVLSCESLSRIIEPLQSRC-------IIINVPAPTDEDVTKVLRKVIERESFLLPENVLQKIVEKSEGNLRR---AILMTEALRMENESGVAESVVIPVPEWEIYIQETARLILQKQSSDMLLKVRERLYELLSRCIPPTVIF-KKLLEHLLPKCPPQIAREVVSEAAKFEHRLVLGQKAIFH..................... 334
12 -11.500[O] KOG0651 26S proteasome regulatory complex, ATPase RPT4  ali follow..  13  187..................................................................................................................................................CLLFGPPGTGKTLLARAVASQL-----DCNFLKVVSSAIVDKYIGESARMIREMFNYARDHQPIVFMDEIDAIGGRQRTLMELLNQLDGFDSLGKVKVIMATNRPDTLDPALLR--GRLD----IEIGLPNEQSRLEILKIHSNKITKHGEIDFEAVVKLSDGFSAADLRNVCTEAGMFARAEREFVIDEDFMKAVRKVGDAKRLE.............................................................................................. 398
13 -11.500[O] KOG0741 AAA+-type ATPase  ali follow..  15  256..................................................................................................................................................ILLYGPPGCGKTLLARQIGKMLNARE----PKVVNGPEILNKYVGESEANIRKLFADAEEGLHIIIFDEIDAICKQDTVVNQLLSKIDGVEQLNNILVIGMTNRPDLIDEALLR--GRLE--VKMEIGLPDEKGRLQILHARMRGHQLLSADVDIKELAVETKNFSAELEGLVRAAQSTAKAESLQVTRGDFLASLENDIKPAFGTNQEWGDPVTRVLDDGELLVQQLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDY.. 611
14 -11.500[L] KOG0991 Replication factor C, subunit RFC2  ali follow..  11  1.........................................................................MEVEAVCGGAGEVEAQDSDPAPAFSKAPGSAGHYELPWVEKYRPVKLIVGN-EDTVSRLEVFAREG---NVPNIIIAGPPGTGKTTSILCLARALLGPALKDAMLELNASN-VRNKIKMFAQQKVTLPKGRHK---IIILDEADSMT--DGAQQALRRTMEI-YSKTTRFALACNASDKIIEPIQSRCA-------VLRYTKLTDAQILTRLMNVIEKERVPYTDDGLEAIIFTAQGDMRQALNNLQSTFSGFG-------------------------FINSENVFKVCDEPHPLLVKEMIQHCVNANIDEAYKILAHLWHL.................................................. 288
15 -11.400[LO] COG1474 Cdc6-related protein, AAA superfamily ATPase  ali follow..  14  42........................................................................................................................LLHRNEQINSLATILVSALRGETPSNVLIYGKTGTGKTYVGKELERVSEDKSLFCSVVYINCEVIDTNLARHFEEMKFKEAIDARDQVIIIILDEIDKLIKKGDDVLYNLSRINTDLRKAKVSMIGVSNDLKFTEFLDPRVKSSLGEEELI-FPPYDAEQISDILKQRAKMA--VLGEMVIPLCAAFAAQEHGDARRAL----------------DLLRVS-GEIAERENQPQVLEEHVRRAQEKIEIDRVVEVV-----RTLPTQSKLVLYSIILLRSRGREGKNVTTG-----EMYNVYRQLCHHIDVDILTQRRVTDLMSELD 364
16 -11.400[O] KOG0733 Nuclear AAA ATPase (VCP subfamily)  ali follow..  17  529..................................................................................................................................................VLLWGPPGCGKTLLAKAVANES-----KANFISIRGPELLNKYVGESERAVRQVFLRARASSPVIFFDELDAMVPRRDDSLTLLTELDGLSDRSGVYVIAATNRPDIIDPAMLR--GRLD----LLVDLPDAHERVEILKTLTKQTPLHEEVNLDVLGRDERCSNFADLA-ALVREAAVTALRSAVFADIASNEPEITQHSALEPIRVTNADFELAFKNI-SVSDRDRQKYQRLAK................................................................ 768
17 -11.400[O] KOG0727 26S proteasome regulatory complex, ATPase RPT3  ali follow..  13  192..................................................................................................................................................VLLYGPPGTGKTMLAKAVANHT-----TAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPIIFIDEVDAIATAQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLR--GRLD----IEFPLPDRRQKRLVFQVCTSKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHARKNRYVILPKDFEKGYRANVKKPDTD.............................................................................................. 403
18 -11.300[LD] KOG2227 Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase  ali follow..  126........................................................................................................................ILCREDEQIRIFEFVKGCIDQQKAGSLYICGCPGTGKSLSMEKVVQQVGDWSPPVDTLSVNCTSLSKKILGEIKPGKSQKQESSSSRMMLIIADEMDYLITKD--RGVLYDLFMLTTLPFSRCILIGVANAIDLADFLPKLKSLNCKPMVITFRAYSKDQILRILQERLRVLSYVFQPKALELCARKVAAASGDMRKALCVCRSALEILEIETRGSTGPE---SQGPTPDDSVVRMDHMAAALSKTFKSPVVETI-----QSLPQHQQIIICAAAKAFRGSKKDA---------GELNKLYLEICKSWMISPAGITEFTNMCTVLN 463
19 -11.200[O] KOG0652 26S proteasome regulatory complex, ATPase RPT5  ali follow..  16  208..................................................................................................................................................VLLYGPPGTGKTLMARACAAQT-----NATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKAPIIFIDEIDAIGTKQRTMLELLNQLDGFSSDERIKVIAATNRADILDPALMR--GRLD----IEFPHPTEEARARILQIHSRKMNVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLARRDATEVNHEDFNEGIIQVQAKKKAS.............................................................................................. 419
20 -11.100[O] KOG0737 AAA+-type ATPase  ali follow..  16  451..................................................................................................................................................ILLFGPPGTGKTMMAKAIANEA-----GASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPIIFVDEVDSMLGQRKIKNEFMTHWDGLMSNAGDLVLAATNRPFDL---DEAIIRRFERRIMVGL--PSVESREKILRTLLSKEKTE--QELAQMTDGYSGSDLKNFTAAYRPVRELIKQECLKDQERRKREEAEK--NSEEGSEAKEEVSEERGITLRPLSMEDMKVAKSQVAASFAAEGA........................................................ 699
21 -11.100[L] COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase  ali follow..  13  25...................................................................................................................TVEQYI-GQQHILGPGKPLRRALEAGHIHS-MILWGPPGTGKTTLAEVAANYANAEV----ERVSAVTSGVKEIRAAIEKARENKLSGRRT---ILFVDEVHRF---NKSQQDAF--LPHIEDGTVTFIGATTENPS---ELNNALLSRARVYKLTSLNQQEILQALHQAIADTEKVAAVFADNVLDRLAELVNGDARMSLNYLELLYDMAR-GRKQIDLPLLAEVAG-------EKVSRFDNKGDIWYDLISAVHKSIRGSDPDAALYWAARMPLYIARRLLAIASEDVG........................................ 305
22 -11.100[O] KOG0726 26S proteasome regulatory complex, ATPase RPT2  ali follow..  13  221..................................................................................................................................................VILYGPPGTGKTLLAKAVANQT-----SATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPIVFIDEIDAVGTKQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIR--GRID----IEFPLPDEKTKRRIFTIHTSRMTLAEDVNLSELIMAKDDLSGADIKAICTEAGLMARERRMKVTNEDFKKSKESVLYRKKEGTPE........................................................................................... 435
23 -11.000[L] COG0470 ATPase involved in DNA replication  ali follow..  13  49..................................................................................................................................................LLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASD---DVVRNQIKDFASTRQIFSKGFKLIILDEADAMT--NAAQNALRRVIER-YTKNTRFCVLANYAHKLTPALLSRC-TRF------RFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNGDMRR---VLNVLQSCKATLDNPDEDEISDDVIYECCGAPRPSDL--KAVLKSILEDDWGTAHYTLNKVRSAKGLALIDLIEGIVKILEDYELQNEETR------VHLLTKLADIEYSISKGGNDQIQGSAVIGAIK 328
24 -10.900[O] KOG0730 AAA+-type ATPase  ali follow..  12  550..................................................................................................................................................VLFYGPPGCGKTLLAKAIANEC-----QANFISVKGPELLTMWFGESEANVREIFDKARQSAPVLFFDELDSIATQRGNSAQLLTEMDGMNAKKTVFIIGATNRPDII---DSALLRPGRLDQLIYIPLPDEDSRLNIFKACLRKSPVALAKYTQGFSGADITEICQRAC-AIRENIEKDIENERRRSQNPEAMEEDM--VDDEVSEIRAAHFEESMKYA-SVSDADIRKYQAFAQRGFGSEFRFDVGRTTGVAAADPFATSA..................................... 833
25 -10.900[H] COG1239 Mg-chelatase subunit ChlI  ali follow..  11  58........................................................................................................................VVGYDDTVIPQLVNALLARQN-----FILLGLRGQAKSRILRAITELLLPRADRYVEKLATPDVTVADLIGDVDPIKAARLGTSLGD-GIFAVNELADLSPKNILQEGDVQIKGYPIRLELDVMLVFSANPEDYTAIVTPLKDRI--GSEIRTHYPDVQLGMDITAQEAVEEGVVVPPFIAELIED-IAFQAREDGRIDKLS----------VSQRLPISLMELACANAERRSLVSGDAPVVRVTDVYAGLPAITGKMELEYEGELKGADNVAKDLIRKAAGAAYARSYGSADTRELEKWFDQGNVFRFPQGGDASAALKATGEVP 429
26 -10.800[S] COG4916 Uncharacterized protein containing a TIR (Toll-Interleukin 1-resistance) domain  ali follow..  15  9.....................................................................................................................DVFKTVGLPPYTYVKPKHFGEVRADISQVLLIEGPSGIGKTCVVFKVFEELQWSQGRDFTYVGCRDQNAEQIIDDFLKNAAAGNALS-----VLVIDDFHLL--SQAKRMEIGSTLKRLSDRAKVILIGIPTAGVSLLSDAYDLGPRLG---SYALTRASDVEIDKLISEGEQALAVLF--EDRDVLLAESAGNFWLAQYVCNKVCAIEEVYETQDDAKILTFDILGIR----------GRLMAELTQRYLPIARTFAKGKRWRP................................................................ 263
27 -10.300[O] COG0465 ATP-dependent Zn proteases  ali follow..  18  146...............................................................................................................QIKTSFAD-VAG-----CDEAKEEVSELVDYLREPVLMVGPPGTGKTLLAKAIAGEA-----KVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPIIFIDEIDAVGRQEQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLR--GRFDRQVVVGL--PDVRGREQILKVHMRRVPLDTDIDASVIARGTPGFSGADLANLVNEAALFAARGNKRVSMVEFEKAKDKIMMGAERRSMVMTEAQKESTAYHEAGHAIIGHDPVHKVTIIPRGRALGVTFFLPEGDESQISTLYGGRLAEEIIYGPEKVSTGASNDIKVATSI........ 499
28 -10.200[O] KOG0729 26S proteasome regulatory complex, ATPase RPT1  ali follow..  15  212..................................................................................................................................................VLLFGPPGTGKTLCARAVANRT-----DACFIRVIGSELVQKYVGEGARMVRELFEMRTKKACLIFFDEIDAIGGAQRTMLELINQLDGFDPRGNIKVLMATNRP---DTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFARARRKIATEKDFLEAVNKVIKSYAKFSATPRYM....................................................................................... 430
29 -10.100[L] COG2812 DNA polymerase III, gamma/tau subunits  ali follow..  14  6..............................................................................................................LYRVWRPQKLVVGQEH----TKTLQNALVQEKFSHAYLFSGPRGTGKTSAAKIIAKAIKGITSGSIVDVMEIDAASNNGVDEIRDRDHVKFAPSEVRYKVYIIDEVHMLTTG---------AFNALLK-------TLEEPPSHAHKIPLTIISRCQ-----DFKRISNDALVGRMKEILTHEGIEAEDEALVLVARAAEGGMRDSLSLLDQAISFA---DERVTVEDVLAITESAQKGETAEALQLVNQLLANGKDPLRFVEDLIYYYRDLMLFAAPEASQLLERAQINDSFKTLAGEINDASLFAAIEILNDCQQRMRWSSHPRVALELGVVTL. 357
30 -10.100[O] COG0464 ATPases of the AAA+ class  ali follow..  14  253..................................................................................................................................................VLLQGPPGTGKTMLAKAVANES-----DAYFISINGPEIMSKYYGESERAIREIFEDAEKNAPIIFLDEIDSIAPKRRVVAQLLSLMDGLKARKNVIVIGATNRPEAL---DIALRRPGRFDREIELRVPDTEGRLEIFQIHTRGMPLADNVNLMDFAQITYGFVGADIAALCREAAMSAILDALQVTREDFENALKDVQPSAIREILILERVKELLKEVVEWPLKNLYGPPGTGKTLLAKAIAHESDANFITAKGSDLLSKWYGESEKRIAEVFTRARQVAPS---FLDELDSLAPI.. 597
31 -10.100[R] COG1485 Predicted ATPase  ali follow..  13  75..................................................................................................................................................LYFYGGVGRGKSFLMDAFFGCL----PYRRKRRVHFHAFMAEIHQRLKTLKSES-AEIAKETRVLCFDEFHVSDIADAM---LGRLLENLLNEGVVLVATSNYAPSEL----------YPQGQNRSSFLP-----IALIESSLTVLNVDGGEDY-IFFTPANEENEAKLAKLFKEMTGITDLNPGISTIAESGRAIWFDFRALCFGPRSQSDYLYLAEHYEMVFISGLEQLSPQEKAEARRLTWLI-VKLCATGAVDVNHIYTEGDFAEEFTRTASRMVEMQSEV............... 367
32 -9.930[O] KOG0740 AAA+-type ATPase  ali follow..  16  395...............................................................................................................GPPVNWED-IAG---EFAKATIKEIVVWP--MLRPILLFGPPGTGKTLIGKCIASQS-----GATFFSISASSLTSKWVGEGEKMVRALFAARCQQPAVIFIDEIDSLLSQRGDGEEFLVQLDGATTSSEDLVVGATNRPQEI---DEAARRRLVKRLYIPL--PEASARKQIVINLMSKEQCCLSEEEIEQIVQQS-------DA-------FSGADMTQLCRGASLGPIRSLQ-TADIATITPDQVRPIAYIDFENAFRTVRPSVSPKDLE----------------LYENWNKTFGC................................... 672
33 -9.700[L] KOG1514 Origin recognition complex, subunit 1, and related proteins  ali follow..  11  396........................................................................................................................LPCRSKEMEEITAKGSISDDQCLGRCMYIHGVPGTGKTISVLSVMKNLKAE-SPYCFVEINGLKLASVIYEGLSGHRVERFAEGKKIGKILLIDELDVLVTRN--QSVLYNILDWPTKPNSKLVVLG----ANTMDLPEKLLPRISSRMRLCFGPYNHRQLQEIISTRLEGINA-FEKTAIEFASRKVAAISGDARRALEIC-----------AAEVADYRLKKSNISAKSQLVIMADVEVAIQEMFQAPHIQMKSVSKLSRIFLTAMVHELYKTGMAETSFDRVATTVHRLQKLQLNFPSDDVAFALKDNKDLPWLANYL..... 771
34 -9.690[R] KOG2383 Predicted ATPase  ali follow..  16  132..................................................................................................................................................LYVYGDVGTGKTMVMDMFYAYV-EMKRKKRVHF---HGFMLDVHKRIHRLKQSLPKRK-EEACLLCFDEFQVTDIADAM---LKQLFENLFKNGVVVVATSNRPPEDL----------YKNGLQRANFVP-----IAVLKEYCNTVQLDSGID-KLYYLTSEADVEAVMDKLFDELAQKQNDLTRPRILKVQGRELRLNKACGTVADCTFEELLELSKNFDTIFLRNIPQFTLANRTQGRRFITL....................................................... 393
35 -9.210[QK] COG3284 Transcriptional activator of acetoin/glycerol metabolism  ali follow..  17  311..................................................................................................PHSKVRAPLVSREQIPPALRR-LGGDAPVI--AALQAKAAKLARTRLPILIQGETGTGKEHLARAIHEGSGLEGPFVAI-LIESELF-GAFTGASAKGRKGLIEQ--ADGGTLFLDEIGDMP---ALQSRLLRVLAE-RKVRIRIVSASHRPLQTLGAFREDLYYRLN---AATLTLPALRDRPDFLLKRHGDGELILSPAALSALKAH-PGNIRELDNVIGVAAALAEVELGDLPDQLLANADTVGGNEASATLSLT---ISEAARRLGLDRSTVHRQIKRYRLKPHRH.......................................................... 627
36 -9.210[L] KOG2228 Origin recognition complex, subunit 4  ali follow..  13  560.............................................................................................................................TKLYQWVRQTIVLGEG---NSVIIVGPRGSGKSVLVDILSRAAQEINEKSYVVRLNGTYQTDDTLSHPVDLGIAEDVMTTSAAVIFVLEEFDLFVQHSR-QMLLYNLFDIAQSRKAPILIIGLTTRYDCESLEKRVKSRFSHMVIPMRPPSSLSEFEQILKSVLYVSDEGGKDQIITCWNQRVDELLSDTRSHLHKLVQHHYFASRNLK-LLYVDLLFPILSMAPDRPLLADEDFANISLKVSDHKVELVKNLSLLELALLICAVRFEARDIPACNFNSAYQEY..................................... 879
37 -9.160[O] KOG0734 AAA+-type ATPase containing the peptidase M41 domain  ali follow..  18  276...............................................................................................................MKNVTFEH-VKG-----VEEAKQELQEVVEFLKNPILLVGPPGTGKTLLARAVAGEA-----DVPFYYASGSEFDEMFVGVGASRIRNLFREAKANAPVIFIDELDSVGGKRQTINQLLAEMDGFKPNEGVIIIGATNFPEALDNALIR--GRFDMQVTVPR--PDVKGRTEILKWYLNKIKFDQSVDPEIIARGTVGFSGAELENLVNQAALKAAVDGKEVTMKELEFSKDKILMGPERRSVEIDNKNKTITAYHESGHAIIAAMPINKATIMPRGPTLGHVSLLPENDLAQMDVSMGGRVAEELIFGTDHITTGASSDFDNATKI........ 627
38 -9.160[R] KOG2170 ATPase of the AAA+ superfamily  ali follow..  70.................................................................................................................DADIANLLFGQHDVVVNSIKSHWYNENPRKPLVLSFHGYTGSGKNYVAEIIANNTFRLGLRSTFVIVATNDFPDNKLEEYQVELRNRILTTVQKCSIFIFDEA------DKLPEQLLGAIKPFLDYYSTFILLSNKGGGEIARITKEQYESGYPREQLRLEAFERELMNFSYNEKGGLQMSEL-NHLIDHFVPFLPLQREHVRSCVGAYLRKRGRGDLVSNVDFVERVLNSLQYFPESSKAFSSSGCKRVDAKTDLEMAKIRPLLSSVH................................................................ 351

FFAS is supported by the NIH grant R01-GM087218-01
1 4 0 5 8 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I. and Godzik A Connecting the Protein Structure Universe by Using Sparse Recurring Fragments. Structure (Camb.) (2005) Aug;13(8):1213-24