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Query: gi|30260199|ref|NP_842576.1| recombination protein F (BA_0004) [Bacillus anthracis str. Ames], from B.anthracis

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MFISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIRWDEDFGQIKGKLQKRNSSLSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVMFAPEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGNSKNEETMLDVFTLQLIEHGTKILRKRFEFLHLLQEWAAPIHRGISRGLEELEIVYKPSVDVSESMDLSKIKEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQVFGSQGQQRTTALSLKLAEIELIYSEVKEYPILLLDDVLSELDDYRQSHLLNTIQGKVQTFVTTTSVDGIEHETLKEAKTIHVTNGTVDCEIDRALast
1 -104.000[L] COG1195 Recombinational DNA repair ATPase (RecF pathway)  ali follow..  24  1MSLTRLLIKDFRNIENADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQPGRVIRHEQEAFVLHGRLQSEERETSIGLTKDKQGDSVRIDGTDGHKIAELAHLMPMQLITPEGFTLLNGGPKYRRAFLDWGCFHNEAGFFTAWSNLKRLLKQRNAALRQVS-----RYEQLRPWDKELIPLAEQISTWRAEYSSAIAQDMADTCQQFLPE-FSLTFSFQRGWEK---------ETDYADVLERSFERDRMLTYTAHGPHKADFRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLYLIDDFASELDDARRGLLASRLKAQSQVFVSAISAEHVIDMSDENSKMFTVEKGKITD..... 357
2 -23.900[R] COG4637 Predicted ATPase  ali follow..  15  7KQLSRIVLKGFKSIAKCDLEISR-VNILIGANGAGKSNFIGFFRMVGVFVSRQGSPDALLHFGRKTTEHLEFQLYFGNNGYFATLEPTQDNRLMFARESFWWNMSG------------EHEIGRGHFETKVLTSTRTGIDEYVLSAMQQWRVYHFHDTSESAYIKQPHGIN--DNAYLRPDARNLASFLYLLRNSYPASYQRIVKTIRLVAPFFG------DFYLRPAPQNKEVIELEWFERGQDIPFKAYL------------------------------LSDGTLRFMCLATVF-----LQPEDLQPETILVDEPELGLHPYAITVLASLMRTASQVIVSTQSIELLNQFEAKDVIVVDRSEGSSY...... 328
3 -18.200[R] COG3950 Predicted ATP-binding protein involved in virulence  ali follow..  16  62IRLRNISLYDYKKFSKLKFTSEKNTTIIIGNNGSGKSTILESISKIRIQNNNNYKFQDSEINIHSISGQTIVRCILEIENDSLTKNRENISRKVSSELEEFKALARMYQRSNELDNNTLSYPLLA---PVERSVTLKRDDAVKYYERKKAKYSDKSEGLKNAF------DGTSNFNDFFSWYKEIDDIINEFKANDSITKEEIEYLLSKIGSLISQLLEKKNNYNNNEDREFLIRQQKVIQESIKTFVSDIDQVKISRTPHLD--IKNGSEISIFNL------SQGEKTLIALVSDIARRLVILNPSLENPIVLIDEIDLHLHPKWQQTIVQKLENNIQFILSTHSPLVLTTVTSEQIKIINELDYRFKLLSPTS 452
4 -14.100[L] COG0497 ATPase involved in DNA repair  ali follow..  18  1.MLLTLSLRDFVIVENLNLDFQSGFTVLTGETGAGKSITLDAIGLLLGDKA-----DYSQVRSGAKEAQLSALFDDGEEELSIRRIIDAKGKRSFINNQTLAQLKAVGSQLIDIHGQNAHHSLNQ--EAAQRELLDAF-LDIKQGEWEALSQSHDSLAHSAELLQAAEEQCQKLLANLQNIEPRFAESLNMLQEQRMGELMGMARKYRIEPEELPAKLAEIEERLQSILSAMRHQAAERLSGETTEHMQHLAMKGARFDIVLLGLEQVQFQVAAN-RLLNKVASGGELARISLALQV-----VASQYTQVPTLIFDEVDTGIGGGVAEMVLRALGRKHQVLAVT............................... 487
5 -13.900[L] COG3593 Predicted ATP-dependent endonuclease of the OLD family  ali follow..  13  1MHLRQLDVLGFRGIHRLSIHFSA-DMVLIGENMWGKSSLLSALSLI--------NPEKALYQFTLRDFHIPAEQTEPVRHLILLFTFAESEKNEDSMEYHLPYLQH-----------------LLVDHLDGYQRLYLRVEGQINANNEVNTTYAFLNEKGEPIVVDDINNLVFSLIARHPVYRFRDARLNRAHHSFRFIRTEVQDETQDEIRAVSDLLCYY---------FLNHKNMTEIKQDTTLLWHKAKSLCTKLKQDETH-------------------RLRKKLFFSLASLFVRNQRIHFGRFTRPIILFEDPDARLHPRMVAIMWELVSYPVQRITTTNSVELLSQVNLNAICRLVRTPEKIN...... 318
6 -13.500[R] COG1106 Predicted ATPases  ali follow..  12  1.MLLQFYFSNYRSFEDGILDMRASVTAIYGANASGKSSVFEAFQFMAVLESLSFSDDNKKNPYKLKVSFKFSESKEKPSEFEINYIDKKGKKELYYNYGFKIDNSGILEEYLASNTKTGVKRNEDYTYIFKRE--RNQKLYLDSSIEKFRENLEISLKEKTLLVSLGAKLNIDEFIRVRTWFININFSNSLYGALLENILPNNIIESEEVRKNLVSFINSFDDSIIDIEVEKISAIDENDKDNYRVFTIHKSDKG-----------TSTARISMNEE------SSGTKKMFSLYQTLLDV------LEKGGVFFADELDIKLHSLLMRNILLTFTDNAQLIFTTHNTIYMDMDLLRRDEIWFVEKDN........ 373
7 -12.900[S] COG5293 Uncharacterized protein conserved in bacteria  ali follow..  10  3SMIHAVRCNQFK-----TVEFRPGLNIVLADNGLGKSTLIEIIHFCLGGTIQKAKGLGS-LTLANQIITVTRNTEDKTEVVIDGNTTNWPIQPKEQEGHKVLSLDDWKAVLGNLTFGLSIDYDKKYKPTFRGHELEERVNFLTSQIHEATNKNITDQKLLEFYQSSLKSEDEPRPDDIV---EEVEIFHRRLIENRREFLGSEIKRLRRDLVSRENFIREKSNERAELLEVLKTHGALEEYTMLQEIYLDNVANQFEEERSSLKIEKELLLQRARRDEIGRDGSEGIDKMKIFCYDLMLAQLWSERDPSPRILIHDSIFDGVDERQISLALQLVDRGFQYICTLNSDM........................... 551
8 -12.200[D] COG1196 Chromosome segregation ATPases  ali follow..  16  1MLLKRLEMNGFKSFDKVAIDFVPGMTAVVGPNGSGKSNITEAIRWVQSAKSLRGGRMGDVIFAGSDFAEVSLILENEDHFLPLDYSYRNGDSEFLINKENC-RLKDILGRESFSIISQGKIDILNSKPEERRSIFEEAAG---------VLKYKHRKKQAENKLFETEENLNRVQDILYELEGQLEPLEMQASIAKD-------------YLFQQEELEKYEVTL...................................................................................................................................................... 229
9 -11.200[S] COG4694 Uncharacterized protein conserved in bacteria  ali follow..  14  1.MIVCIRLKQFNDFNGTKIQKFGRYNLVYGWNGTGKSTLSNLFSCFELRSM--HSCQLNIHVFNQRFVH-KEKIDDLQKLEKLKGELQSKRKARDEKQGEVKKIQRLTDNPDIREWVQTGLEIHKNHESQSCEFCGSTFTQLQKDYATAAEKIDKQMDGWREALKAKITDPGKTDIQISDVVEDDVKNFNEILKSIVALVGKHNNKTSNFKSETSKSKVALEFDYAGSEKKCNDLESEAKNDHKEIEKISQEVGAIEALLSNETVGAKEFNDILGMGEHDGNLSEGEKTAIAFVYFITKLK--NGNNIKDTIVVVDDPVSSFDSNHLFHAYSFLRT-KQLFVLT............................... 583
10 -10.900[P] COG1122 ABC-type cobalt transport system, ATPase component  ali follow..  12  24.............LSDFYATFEGC-DFIIGPTGSGKSTVLKMVNGLIPNFLGGTLEGKVRVFGEKPNPRIAFFVKQNPEEMITSTQVIDEIQQGFGWGEAKREAEEVCEELGIGGLLERKTYELSTGELQL--VFDEPFANLSRKNVLKVI---KILRDYPHLVSEVEPGEAVYDGLIELREGELIALVGDNGAGKTMMLKKIATEMRKLGLDFSIVLQNPSYHLVED-SVGKEVDLETAKEFGIESLLSRHPQSL---------------------------SMGQMKRVAIAKAF-----------KSKILLLDEPTAGQDCNFRRRLLYLLRKHRKSAIIATHDPYVAE....................... 362
11 -10.600[P] COG1119 ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA  ali follow..  12  8LQILQGTFRDTKTLQLPQLTLNAGDSWFVGSNGSGKSALARAL--LLKGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLGPGEDDTGAEIIQDEVKDAPRCMQLAQQFGITPLLDRRFKYLSTGETRK--ILDEPFDGLDVASRQQLAERLASLHQSGITLNRFDEIPEFVQFAGVLADCTLAETGAKEELLQQALVAQLAHSEQLEGVQLPEPDEPSARHALPANEPRIVLNNGVVSYNDRPILNN--SWQVNPGEHWQGAGKSTLLSLITGDHPQGYSSWGQQRLALIVRALVK---------HPTLLILDEPLQGLDPLNRQLIRRFVEGETQLLFVSHHAEDAPACITHRLEF--VPDGGLYHY.... 488
12 -9.550[S] COG4913 Uncharacterized protein conserved in bacteria  ali follow..  8  20FRLQHLEVVNWGTFNTWCYTLGGRSGLLTGDIGSGKSTLIDAITTLLVPARERSTAKPVALRGTSNYSVILGVFHNVGYDKVITLAQHEQALELFHQTVSMKSVGNLTDFVCSHMLEPDDLDRAHQAVLTAKQQVK-LLVPLVDDV-LKGELLKHRLDALAAEAAQLTVEIQHLEEQRKAADSEVTQLRQALRDNGGDRLEELAAEIEQLEQAKAQRQKKSDLTKIDETAPADAIGFLTQQQRFAQHTENAAIERLHNDKSEKDRALYDAREKHTTLLAEINSLQQRQSNIQIRIRHDLCMALSIDAEALPAGELIQVRKEDARNWEGAAERLLHGFGLTLLVPDA............................. 514
13 -9.500[L] COG0419 ATPase involved in DNA repair  ali follow..  12  432......................................................................................................................AERAGLLGECKQLENSITKDKEELNMEFKDADERFRRQLIKTKTTGKANED--------LGKYAKAL----VAIMQLHSMKMNEINRIVDELWKQTYCGTDIDTILIRSDSEGKGNRTYN------------------------------RVCMVKGDAELDMRGSAGQKVLACIIIRLALAECLGVNC---GILALDEPTTNLDEENICSLAKNLSRNFQLIVITHDEQFIRLVNSDAYYYYRVKRDT........ 650
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;