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Query: gi|30260203|ref|NP_842580.1|(removed signalp:1-28) D-alanyl-D-alanine carboxypeptidase (BA_0009) [Bacillus anthracis str. Ames], from B.anthracis

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst ETGSALNIEAGAAILVEANSGKILYQKNADELLSIASMTKMMSEYLVHEAVDKGKFKWDQKIKVSEYAYKVSQDASLSNVALENGGSYTVKELYEAMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKELGLKNYKFVNSTGLTNKDLKGMHPEGTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIPKKEFRPEKEKFAMSNWNWMLKGLVKEYDGVDGLKTGSTPEAGDCFTGTVERNGMRFISVVIKTSSHTARFDETKKLYDYGFANFEMKQMYKKGSSVKGQETVRVENAKDKDVAVQTKQAISLPVPKGSKEVYKTELKESSKGQEAPIKKGAALGQMVITPKDTNDPGFLTGKSLQVDLVTTSEVEEANWFTRAMRGIGSFFSGIWNSAVDTVKGWFLast
1 -98.100[M] COG1686 D-alanyl-D-alanine carboxypeptidase  ali follow..  32  29.VPAPPQLAAKSYVLMDGESGQVLVENNGDQRLPPASLTKLMTAYIATKEIEAGRIGENDLVTVSEHAWRTGG----SRMFIKVGSQVSVSDLLHGIIIQSGNDASVALAEHIAGSEDAFADMMNTTAQKLGLTNSHFMDATGLP--------------NPDHYSSARDMAVLARAIIYGEPSHYAIYAQKEFLW----NNIKQPNRNLLL----WRDKTVDGLKTGHTDEAGYCLVASAVRDGQRMIAVVFGTNSEQARAAETQKLLTYGFRFFESRNFYKKGTELT---KGLVWKGSEHEVKAGLAEDLTMTLPRGQMQKLQASMVLEPQ-LMAPIQQGQVIGKVEVKLDDKVI--------RSADLVALNAVEEGGFFRRLWDSIRLFFYGLFN.......... 386
2 -23.000[V] COG2367 Beta-lactamase class A  ali follow..  13  27...........RFMVRNLLTGEEI-GRGENEETPSGSTRKTSIMMAVLKAASEGRIDLDQPVTYEKRLAEEVASGMFR--YMTPGIVISLRDAIAGMMVLSDNVCTKMVLERLTLEE------VDGYCKSLGMANTH------HRFLIPPLALAADHPLKTVTTTSAADQVLLLQTILDA-----------QSSPEAQAKLGCSPQLCEWAMQTLKNQILRYGIKSGRGKRGRMDAGIVYRNGAPSFIITTYTDEVPQV.................................................................................................................................................... 260
3 -9.760[V] COG1680 Beta-lactamase class C and other penicillin binding proteins  ali follow..  14  47........GATGMALVVIDGNQRVFR-QLDSVVRIASLTKLMTSEMLVKLLDQGTVKLNDPLS-----------PPGARVPTYNGTPITLVNLATGSQAAYSNLAFDLLADALA-SGKPYTQLFEEQIRPLGMKDTTYTPSPDQCRRLMVAERGASPCNNTLAAIGSGGVYSTPGDMMRWMQQYLSSDFYQRSNQADRMQTLIYQRAQFTKVIGMDVPGKADALGLGWVGGGGFITYMAMIPQKNIGAFVVVTRSPLTRFKNMSDGIND.......................................................................................................................................... 369
4 -9.680[V] COG2602 Beta-lactamase class D  ali follow..  13  49...........TFILHDLQKDQTFVRKRANQRQTPQSTFKVVNALI---GLQVKAVRDEYDVKRWDGVKR-----------------------------FESWNRDHTLGSAMRESAIWYYQAL---ARDIGEERKTWLHTLSYGNEDISGGIDQFWLQSSLTISPLEQETFLEKLAKEELP-----------------DKPVMKIVKRMMIQEEGDHYTLYG-KTGTRLTDM--FVGFIKTEHGSYVFVTNVDDSGTKAKNITVDILK.......................................................................................................................................... 260
5 -6.570[M] COG2027 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4)  ali follow..  13  42...........ALMVQKIGASTPAIDYHAQQMALPASTQKVLTALAALLQLGAGDVVIDTSAIVDRNCFSVQTIPSPAGNVLAQTQSAPLHDLLKIMLKKSDNMIADTVFRTIGGTWRSGADAVRQILRQVDLGNSIVVDGSGLSRH---------------NLISPATMMQVLQYIAQN-DQELNFISMLPLAGYDGTLRYRGGLHEAGVNGKVS-------AKTGALQGV-YNLAGFITTASGQRMAFVQFLSGYAVPPEDQKNRRA.......................................................................................................................................... 465
6 -5.060[R] COG0824 Predicted thioesterase  ali follow..  13................DTDAAGVVYFANILSICHEGYEASLRTSGISLKEFFTNPLFCGAQVIISLVPQKIGAEKFEINYEIYLADVLVAKAVTRHVCIDANTRSKQELSMEIIQWLDGYRKDTEEVERR..................................................................................................................................................................................................................................................................................... 142
7 -4.890[J] KOG1762 60s acidic ribosomal protein P1  ali follow..  15  2...................................ASLSELAYIYSAL-------ILHNDKINALIKAAGVNVEPFWPGVFAKALANVSIGNPICNVRAGGLAAAGDPTPSTAAASVEKKVEAKKEESEEFGLFD................................................................................................................................................................................................................................................................................ 100
8 -4.790[E] COG2066 Glutaminase  ali follow..  13  50............GIAVFTNQGEVITAGDAQEGFSIQSISKVLSLTLAMGLYQPDELWSRVGKEPSGQAFNLEMEQGIPRNPFINAGAIVVCDMLQSRLSAPRQRLLEFVRQLSGEPQIAYDKVVAASEMMHSDRNAYLMRSFGNFHNEVIPVLHNYFHA----KMSCVELAKTFSYLANK---VSVVTGETVITPTQSKQTNAL-----LATCGLYDGAGEFAYRVGMPGKSGVGIAVVPGEMTIAVWSPALDQSGNSLAGTRALELLAQRIG...................................................................................................................................... 312
9 -4.720[E] COG4448 L-asparaginase II  ali follow..  13  38......SRHQGLAVVVDGDGGVLFSAGDIERGIFPRSACKAMQALPLVESGATDAYGFGNRLACSSHAAAMLAKAGRDVDTLECGAHWSSDQKTIIHQARTLEKPT-ALHNNCSGKHSGFICA----CCHTGTDPKGYVGYDHPLQRQIRATMESLTGAALGHDNCGVDLKGLAHEACMAEPFYVAGTGRACTKL-------------QIAPGKIFAKTGAEGVFIAALPNQGIAMAVKCEDGTTRAAEAMV-----------TALLARYFDDGSAEQQALKGMANRQMRNWNGIHVGDISVIGL...................................................................................................... 353
10 -4.620[S] COG5572 Predicted integral membrane protein  ali follow..  12  8.......IVSSSPETGGLRGGEILFADHCNLGHPRNELSHDRAAQGRLGANPPGESLMTRTATTAALAAAIALSAGVSIAAADEHKAGAQTEKCYGVSKAGENDCKAGAGTSCAGTSKV................................................................................................................................................................................................................................................................................................ 119

FFAS is supported by the NIH grant R01-GM087218-01
1 4 0 5 8 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I. and Godzik A Connecting the Protein Structure Universe by Using Sparse Recurring Fragments. Structure (Camb.) (2005) Aug;13(8):1213-24